SRR2099008_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2099008_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	202239
Sequences flagged as poor quality	0
Sequence length	43
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGTCTGCAGCGAGGTGCAGACTCTCGCGATCGTCGGACTGTAG	694	0.3431583423573099	No Hit
AGTCTGCACAAAACGACTCACTATAGGGAGTCGTATTACCGGC	585	0.2892617150994615	No Hit
AGTCTGCAGCGAGGTGCAGACTCTCNCGATCGTCGGACTGTAG	473	0.23388169443084666	No Hit
AGTCTGCACAAAACGACTCACTATANGGAGTCGTATTACCGGC	348	0.17207363564891046	No Hit
AGTCTGACCTAATCCCCTATAGTGAGTCGTATTACCGGCCTCA	323	0.1597120238925232	No Hit
AGTCTGACTCATTAGTCAGACTAATGAGATCGTCGGACTGTAG	295	0.1458670187253695	No Hit
AGTCTGCAGAAAAACTCACTATAGTGAGTCGTATTACCGGCCG	251	0.12411058203412795	No Hit
AGTCTGCAAGCAGTGCCGAGGCGCGGGTCGTCGCCGAGCGGAA	222	0.10977111239671873	No Hit
AGTTTGCCGTCACGGAGTCGTATTACCGGCCGACGATCGTAAC	215	0.1063098611049303	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATATGG	15	0.006863545	52.64419	22
TCTCGCG	90	0.0	43.870163	22
CGCGGTT	30	4.4990582E-5	43.87016	20
CGCAAGT	30	4.4990582E-5	43.87016	20
ACTCTCG	95	0.0	41.561203	20
CTCGCGA	95	0.0	41.561203	23
CTCTCGC	95	0.0	41.561203	21
GTGGCGT	25	0.0010446018	41.4988	25
CGCGATC	95	0.0	40.952766	25
TCGCGAT	95	0.0	40.952766	24
ATAGGGA	245	0.0	39.75173	23
TAGGGAG	260	0.0	36.90999	24
TGTATCG	60	1.8189894E-12	35.506424	5
CGCAGTT	25	1.5671733E-4	35.506424	5
TGCTACG	45	3.8835424E-9	35.506424	5
TGCACGA	155	0.0	35.506424	5
TGCCGTA	30	1.097817E-5	35.506424	5
TACAAGC	30	1.097817E-5	35.506424	5
GGCACAT	20	0.0022502101	35.50642	5
TGCATAA	320	0.0	35.50642	5