##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088721_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2981056 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.504766431761094 31.0 31.0 34.0 30.0 34.0 2 31.714190877326693 31.0 31.0 34.0 30.0 34.0 3 31.78616034049679 31.0 31.0 34.0 30.0 34.0 4 35.519395140513964 37.0 35.0 37.0 33.0 37.0 5 35.39841284430752 37.0 35.0 37.0 33.0 37.0 6 35.44145296163507 37.0 35.0 37.0 33.0 37.0 7 35.29581899836836 37.0 35.0 37.0 32.0 37.0 8 35.335789398119324 37.0 35.0 37.0 32.0 37.0 9 36.913321319693424 39.0 37.0 39.0 33.0 39.0 10 36.73506435303463 39.0 35.0 39.0 32.0 39.0 11 36.82866843158934 39.0 37.0 39.0 32.0 39.0 12 36.67785073477318 39.0 35.0 39.0 32.0 39.0 13 36.72058055937225 39.0 35.0 39.0 32.0 39.0 14 37.655849806243154 39.0 37.0 41.0 32.0 41.0 15 37.68083692490178 39.0 37.0 41.0 32.0 41.0 16 37.5568348934069 39.0 36.0 41.0 32.0 41.0 17 37.617882387986 39.0 36.0 41.0 32.0 41.0 18 37.57842254556775 39.0 36.0 41.0 32.0 41.0 19 37.631554053328756 39.0 37.0 41.0 32.0 41.0 20 37.5175887336568 39.0 36.0 41.0 32.0 41.0 21 37.4433274651667 39.0 36.0 41.0 32.0 41.0 22 37.315526779772 39.0 36.0 41.0 31.0 41.0 23 37.132779122565964 39.0 36.0 41.0 31.0 41.0 24 36.963956732111036 39.0 36.0 41.0 31.0 41.0 25 37.14333477801155 39.0 36.0 41.0 31.0 41.0 26 37.00723871004101 39.0 36.0 41.0 31.0 41.0 27 36.87575912696709 39.0 35.0 41.0 30.0 41.0 28 36.696762154082315 39.0 35.0 41.0 30.0 41.0 29 36.57399156540501 39.0 35.0 40.0 30.0 41.0 30 36.35607382082054 38.0 35.0 40.0 30.0 41.0 31 36.1734492743511 38.0 35.0 40.0 30.0 41.0 32 35.99922544225939 38.0 35.0 40.0 29.0 41.0 33 35.84837017486421 38.0 35.0 40.0 29.0 41.0 34 35.65539895929496 38.0 34.0 40.0 27.0 41.0 35 35.52050917527212 38.0 34.0 40.0 27.0 41.0 36 35.302562246398594 38.0 34.0 40.0 26.0 41.0 37 35.20490960250327 38.0 34.0 40.0 25.0 41.0 38 34.993672376500136 38.0 34.0 40.0 24.0 41.0 39 34.88537518248567 38.0 33.0 40.0 24.0 41.0 40 34.700317605573325 38.0 33.0 40.0 23.0 41.0 41 34.543862309195134 38.0 33.0 40.0 23.0 41.0 42 34.260437576482964 38.0 33.0 40.0 21.0 41.0 43 33.89192588129844 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 3.0 13 4.0 14 11.0 15 17.0 16 40.0 17 89.0 18 261.0 19 562.0 20 1277.0 21 2463.0 22 4629.0 23 8112.0 24 13069.0 25 20250.0 26 28901.0 27 39800.0 28 53808.0 29 69382.0 30 86639.0 31 105742.0 32 129979.0 33 158087.0 34 192062.0 35 234102.0 36 299662.0 37 409901.0 38 530611.0 39 591591.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.19023594323622 21.40630702677172 14.3982535047983 23.005203525193757 2 19.105478058781856 23.86889075549067 34.442761222868675 22.582869962858798 3 19.90744219498057 24.273311202473216 33.207024624830936 22.61222197771528 4 13.978033287533009 16.607839638034307 35.81975648897572 33.594370585456964 5 12.581850189999786 38.78712778290646 34.628366592241136 14.002655434852615 6 32.184568153030334 37.264445887631766 13.556605444513622 16.99438051482428 7 25.545679115051843 33.73210701174349 21.25444808819425 19.467765785010414 8 27.288450804010388 34.14742963567273 18.9956847506387 19.56843480967818 9 24.579746237574874 14.554137862556088 22.04779111831512 38.81832478155392 10 16.422972262178234 28.143885924987654 33.23382720753988 22.199314605294234 11 32.93675127203246 22.70628260589536 23.501839616565405 20.855126505506774 12 20.960290581592563 27.66398886837416 30.962148983447474 20.4135715665858 13 31.871927263359023 21.187760310440325 26.2584466712467 20.68186575495395 14 20.31474752570901 23.609083492561027 28.066027609008355 28.010141372721613 15 22.639259376543077 30.018355911462248 25.540144163678914 21.802240548315766 16 21.40140943343567 28.669874031215787 26.929081506687563 22.999635028660983 17 21.435960948066725 27.333669679469292 27.272147856330104 23.95822151613388 18 22.767905064514053 25.88783974537882 29.731746065823657 21.612509124283473 19 22.472003209600892 25.261819972519806 31.179857070782973 21.08631974709633 20 23.525119957491576 24.737609759762982 30.724582161489085 21.01268812125636 21 22.176939983683635 25.690225208785073 31.47351139998712 20.65932340754417 22 20.942243285600807 25.999176130874428 31.031252012709594 22.027328570815175 23 21.95332794821701 26.20383515103373 31.6022577234376 20.240579177311663 24 21.72696520964383 26.21698485368943 29.66187149788531 22.394178438781427 25 21.670609341119388 26.555254245475428 30.696370682067027 21.077765731338157 26 21.34991761308744 27.27895752377681 30.53813816312072 20.832986700015027 27 20.334136628094203 27.26295648253505 30.38128099572769 22.02162589364306 28 20.89870166813371 26.95853415702355 30.275647287404194 21.867116887438545 29 20.948449140170464 26.824890240237014 29.74794837802443 22.47871224156809 30 21.193697803731297 27.189224221215568 31.35291655037678 20.264161424676356 31 22.037257938126622 26.838677300929604 30.884961570664892 20.239103190278882 32 21.54065539191481 26.77775929066747 30.060052545138365 21.62153277227935 33 21.08481021490371 26.67782825951609 30.589160351231243 21.648201174348955 34 20.23444041306168 27.013749490113568 31.35744514695464 21.394364949870113 35 19.927334474763306 28.898517840657806 30.26826735224028 20.905880332338608 36 22.017164387384874 26.696814819983256 30.15102701861354 21.134993774018334 37 21.093297140342216 27.382310161231455 30.208355696773225 21.316037001653104 38 20.84529777367483 26.0182633268211 31.448687981708495 21.687750917795572 39 20.40837206681122 25.667850587174478 32.23726759913266 21.68650974688164 40 19.30315968569527 26.022657742759613 32.032038311256144 22.642144260288973 41 20.583142349556667 25.25927054037227 32.034118111165974 22.123468998905086 42 19.47477672341613 27.061853249318364 31.31537951652032 22.147990510745185 43 19.611238433628888 27.03213223770369 30.732968451448077 22.623660877219347 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1349.0 1 1162.5 2 976.0 3 1771.5 4 2567.0 5 2567.0 6 4026.5 7 5486.0 8 5996.5 9 6507.0 10 10090.0 11 13673.0 12 13673.0 13 25856.0 14 38039.0 15 60242.0 16 82445.0 17 75836.5 18 69228.0 19 69228.0 20 73731.5 21 78235.0 22 63284.5 23 48334.0 24 53644.5 25 58955.0 26 58955.0 27 64427.5 28 69900.0 29 73984.5 30 78069.0 31 84540.5 32 91012.0 33 91012.0 34 100763.0 35 110514.0 36 119619.5 37 128725.0 38 135791.0 39 142857.0 40 142857.0 41 147873.5 42 152890.0 43 160430.5 44 167971.0 45 182611.0 46 197251.0 47 197251.0 48 256021.5 49 314792.0 50 291265.5 51 267739.0 52 241408.0 53 215077.0 54 215077.0 55 191936.0 56 168795.0 57 147336.0 58 125877.0 59 111945.0 60 98013.0 61 98013.0 62 86030.0 63 74047.0 64 64630.5 65 55214.0 66 47414.0 67 39614.0 68 39614.0 69 33894.0 70 28174.0 71 23813.0 72 19452.0 73 16147.0 74 12842.0 75 12842.0 76 10121.5 77 7401.0 78 5818.5 79 4236.0 80 3311.0 81 2386.0 82 2386.0 83 1784.5 84 1183.0 85 909.5 86 636.0 87 479.5 88 323.0 89 323.0 90 233.5 91 144.0 92 116.0 93 88.0 94 57.0 95 26.0 96 26.0 97 17.5 98 9.0 99 7.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2981056.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.88010324742523 #Duplication Level Percentage of deduplicated Percentage of total 1 76.31223455062849 35.77525434775195 2 12.800157630284382 12.001454225820991 3 4.617727941583736 6.494386880098979 4 2.093739607690961 3.926189159271033 5 1.0834396259392238 2.5395880763191294 6 0.6546644743130756 1.8414442888931009 7 0.42990844846364473 1.4107906715641236 8 0.28811491948177514 1.080548573794338 9 0.22161040826998443 0.9350206938360835 >10 1.2777086401040711 11.323101171228393 >50 0.13089722702991316 4.236525270443142 >100 0.0791033642943792 6.968858028738239 >500 0.005167165489819122 1.6166645023218154 >1k 0.004736568365642494 4.2123039419557635 >5k 5.023633115075372E-4 1.650981446300005 >10k+ 2.870647494328784E-4 3.9868887216629276 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 40107 1.345395725541553 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35446 1.1890417355460616 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28252 0.9477178556860387 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14697 0.49301321410936255 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8498 0.28506676828613753 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8231 0.2761102106099315 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7550 0.2532659567616308 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7351 0.24659046995427125 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6700 0.2247525709010498 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5634 0.18899343051589773 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5108 0.1713486764421735 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4458 0.14954432254878808 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4299 0.14421064213486764 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3811 0.12784060413491058 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3791 0.12716970093819102 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3738 0.12539180746688422 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3356 0.11257755640954079 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3322 0.11143702097511754 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 3.354515983597759E-5 0.0 0.0 0.0 0.0 6 3.354515983597759E-5 0.0 0.0 0.0 0.0 7 3.354515983597759E-5 0.0 0.0 0.0 0.0 8 3.354515983597759E-5 0.0 0.0 3.354515983597759E-5 0.0 9 3.354515983597759E-5 0.0 0.0 1.0063547950793276E-4 0.0 10 6.709031967195518E-5 0.0 0.0 2.683612786878207E-4 0.0 11 6.709031967195518E-5 0.0 0.0 3.019064385237983E-4 0.0 12 6.709031967195518E-5 0.0 0.0 4.696322377036862E-4 0.0 13 1.0063547950793276E-4 0.0 0.0 6.038128770475966E-4 0.0 14 1.0063547950793276E-4 0.0 0.0 6.709031967195517E-4 0.0 15 1.0063547950793276E-4 0.0 0.0 9.057193155713948E-4 0.0 16 1.0063547950793276E-4 0.0 0.0 0.0012411709139311708 0.0 17 1.3418063934391035E-4 0.0 0.0 0.0018114386311427896 0.0 18 1.3418063934391035E-4 0.0 0.0 0.0021804353893385433 0.0 19 2.0127095901586553E-4 0.0 0.0 0.0029519740655660274 0.0 20 2.0127095901586553E-4 0.0 0.0 0.004461506258185019 0.0 21 2.0127095901586553E-4 0.0 0.0 0.007111573885227249 0.0 22 2.0127095901586553E-4 0.0 0.0 0.01153953498357629 0.0 23 2.0127095901586553E-4 0.0 0.0 0.014625689688486227 0.0 24 2.0127095901586553E-4 0.0 0.0 0.02016064106142253 0.0 25 2.0127095901586553E-4 0.0 0.0 0.024823418278623412 0.0 26 2.0127095901586553E-4 0.0 0.0 0.03488696622941669 0.0 27 2.0127095901586553E-4 0.0 0.0 0.095804976491552 0.0 28 2.0127095901586553E-4 0.0 0.0 0.2173055454174628 0.0 29 2.0127095901586553E-4 0.0 0.0 0.3754374288842611 0.0 30 2.0127095901586553E-4 0.0 0.0 0.6071673930311943 0.0 31 2.0127095901586553E-4 0.0 0.0 0.8886783743747182 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10025 0.0 24.451372 1 GTATTGG 850 0.0 19.370586 1 ACGTTTA 195 0.0 18.97436 26 CAATGCG 190 0.0 17.526316 19 GAACCGT 95 3.6102902E-6 17.526316 6 ATTGGAC 940 0.0 17.515959 3 GGACCCT 1295 0.0 16.428572 6 TTGGACC 1440 0.0 15.673611 4 TATACCG 265 0.0 15.358491 5 CTAGACG 85 5.367713E-4 15.235294 4 TAAACGT 195 4.1836756E-11 15.179487 4 GTATCAA 16415 0.0 14.944259 2 AGCCGTC 285 0.0 14.929824 12 ACTAGAC 125 2.9623916E-6 14.799999 3 GACCCTC 1400 0.0 14.667857 7 CGACGAG 215 1.2732926E-11 14.627907 24 TACCGAC 600 0.0 14.491666 7 TGGACCC 1545 0.0 14.249192 5 TATTGGA 1145 0.0 14.21834 2 TTTTTAC 1865 0.0 13.986595 1 >>END_MODULE