##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088720_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1755326 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.505940776812967 31.0 31.0 34.0 30.0 34.0 2 31.71977456039505 31.0 31.0 34.0 30.0 34.0 3 31.792685803092986 31.0 31.0 34.0 30.0 34.0 4 35.528457961654986 37.0 35.0 37.0 33.0 37.0 5 35.399354877669445 37.0 35.0 37.0 33.0 37.0 6 35.443040210194575 37.0 35.0 37.0 33.0 37.0 7 35.304953040062074 37.0 35.0 37.0 32.0 37.0 8 35.336009949149044 37.0 35.0 37.0 32.0 37.0 9 36.92656008057762 39.0 37.0 39.0 33.0 39.0 10 36.730773656859185 39.0 35.0 39.0 32.0 39.0 11 36.83273876191659 39.0 37.0 39.0 32.0 39.0 12 36.67590806494064 39.0 35.0 39.0 32.0 39.0 13 36.715206178225586 39.0 35.0 39.0 32.0 39.0 14 37.67968685019193 39.0 37.0 41.0 32.0 41.0 15 37.69462766460475 39.0 37.0 41.0 32.0 41.0 16 37.58159737849265 39.0 36.0 41.0 32.0 41.0 17 37.62463154992292 39.0 36.0 41.0 32.0 41.0 18 37.58194831045629 39.0 36.0 41.0 32.0 41.0 19 37.639512546387394 39.0 37.0 41.0 32.0 41.0 20 37.52398528820287 39.0 36.0 41.0 32.0 41.0 21 37.4545377895616 39.0 36.0 41.0 32.0 41.0 22 37.31994626639154 39.0 36.0 41.0 31.0 41.0 23 37.13959970968356 39.0 36.0 41.0 31.0 41.0 24 36.9745790810368 39.0 36.0 41.0 31.0 41.0 25 37.15741121592229 39.0 36.0 41.0 31.0 41.0 26 37.02875989987045 39.0 36.0 41.0 31.0 41.0 27 36.911509315078796 39.0 36.0 41.0 31.0 41.0 28 36.73647060432079 39.0 35.0 41.0 30.0 41.0 29 36.62564617626583 39.0 35.0 40.0 30.0 41.0 30 36.41818898597754 39.0 35.0 40.0 30.0 41.0 31 36.26036189289055 38.0 35.0 40.0 30.0 41.0 32 36.07840936669314 38.0 35.0 40.0 30.0 41.0 33 35.946529020820066 38.0 35.0 40.0 29.0 41.0 34 35.76474797274125 38.0 35.0 40.0 28.0 41.0 35 35.631662152785296 38.0 34.0 40.0 27.0 41.0 36 35.438825038767725 38.0 34.0 40.0 26.0 41.0 37 35.35737008396161 38.0 34.0 40.0 26.0 41.0 38 35.16222513652735 38.0 34.0 40.0 25.0 41.0 39 35.06676993333432 38.0 34.0 40.0 24.0 41.0 40 34.90643618336423 38.0 34.0 40.0 24.0 41.0 41 34.775536851844045 38.0 33.0 40.0 23.0 41.0 42 34.511502136924996 38.0 33.0 40.0 22.0 41.0 43 34.15972018872848 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 3.0 14 5.0 15 7.0 16 31.0 17 62.0 18 127.0 19 305.0 20 736.0 21 1457.0 22 2672.0 23 4529.0 24 7244.0 25 11161.0 26 16057.0 27 22740.0 28 30537.0 29 39149.0 30 49978.0 31 61076.0 32 75379.0 33 92092.0 34 112570.0 35 137736.0 36 176787.0 37 241114.0 38 319884.0 39 351886.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.5708683173382 21.8281960160107 14.335057989228211 23.265877677422882 2 18.959270243817958 23.70380202879693 34.81330533473554 22.52362239264957 3 19.634073670645794 24.593380374927506 32.85748630168983 22.915059652736872 4 13.991190240445365 16.92249758734275 36.0819015954871 33.00441057672478 5 12.551457677947003 38.79638312199557 34.91283100688989 13.739328193167538 6 32.01342656577752 37.60258778141497 13.928637757316874 16.45534789549064 7 25.50466409088682 33.54499392135706 21.762339303354477 19.188002684401646 8 26.587539864389864 34.81022898310627 19.29630165564687 19.305929496856994 9 24.586601007448188 14.683483295980349 22.046104256417326 38.68381144015414 10 16.24718143524337 28.34464936997458 33.677049163517204 21.731120031264847 11 32.8149301041516 23.005641117376488 23.465270838579272 20.714157939892647 12 20.667101153859736 27.650875108099576 31.078614456801755 20.60340928123893 13 30.987748144789055 21.65124882785306 26.265149607537293 21.095853419820592 14 20.14469107163 23.564226815987457 28.14468651407203 28.146395598310512 15 22.397264097951037 30.243271050505715 25.54044092094574 21.819023930597506 16 21.398817085829073 28.78792885196254 27.027515116850086 22.785738945358297 17 21.2641982173112 27.64044969424483 27.434618982456822 23.66073310598715 18 22.29112996674122 26.53000069502759 29.75264993511177 21.426219403119422 19 22.27153246747328 25.772135774209463 31.06539753869082 20.890934219626438 20 23.037145236839194 25.478287224139564 30.64587432761778 20.838693211403466 21 21.9993323177575 26.139531916008764 31.14697782634109 20.714157939892647 22 20.924318331751483 26.591299849714527 30.656641558320217 21.827740260213773 23 21.81503606737438 26.68176737540491 31.14486995578029 20.358326601440417 24 21.63472768021439 26.779583963320775 29.38251925853089 22.203169097933944 25 21.556850408414164 27.077990071359963 30.368888742034244 20.99627077819163 26 21.211501453291298 27.58108750169484 30.22612323864627 20.981287806367593 27 20.394217370448565 27.537391914664283 30.140441148823637 21.92794956606351 28 20.83601564609651 27.261146932250764 30.166077412400888 21.736760009251842 29 21.032560333522092 27.018798787233823 29.789623124137627 22.159017755106458 30 21.18626397603636 27.44686741949928 30.969574882386517 20.397293722077837 31 21.85269289009563 27.172787277121174 30.651343397180923 20.323176435602274 32 21.36907902007946 27.157690366347904 29.78455284089679 21.688677772675845 33 20.97895205790833 26.915399190805584 30.41041948902939 21.6952292622567 34 20.283297803371 27.086877309400077 31.193180070254755 21.43664481697417 35 19.999134063985835 28.603290784731726 30.297392051391025 21.100183099891417 36 21.853319554316407 26.669404999413217 30.130756338138898 21.34651910813148 37 21.091580709224385 27.240239135066645 30.232845636650968 21.435334519058 38 20.778476476734237 26.065129782160124 31.449257858654178 21.707135882451464 39 20.218865327580176 25.772477591057157 32.245634144312795 21.76302293704987 40 19.29482044930685 26.128593776882468 32.01604716160987 22.560538612200812 41 20.363055067833553 25.358480419021877 32.06333182554123 22.21513268760333 42 19.250555167530134 27.037256897009442 31.470963228482912 22.24122470697751 43 19.529876501572925 26.861221220445664 30.921606584759754 22.687295693221657 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 850.0 1 736.0 2 622.0 3 1067.5 4 1513.0 5 1513.0 6 2331.0 7 3149.0 8 3342.5 9 3536.0 10 5706.0 11 7876.0 12 7876.0 13 14408.5 14 20941.0 15 32360.5 16 43780.0 17 40317.5 18 36855.0 19 36855.0 20 40106.5 21 43358.0 22 35906.0 23 28454.0 24 31763.0 25 35072.0 26 35072.0 27 39160.0 28 43248.0 29 46455.5 30 49663.0 31 54436.0 32 59209.0 33 59209.0 34 65222.0 35 71235.0 36 77258.0 37 83281.0 38 87606.5 39 91932.0 40 91932.0 41 95185.0 42 98438.0 43 102928.5 44 107419.0 45 113117.0 46 118815.0 47 118815.0 48 146677.5 49 174540.0 50 161202.5 51 147865.0 52 134086.0 53 120307.0 54 120307.0 55 108385.5 56 96464.0 57 83700.0 58 70936.0 59 63765.5 60 56595.0 61 56595.0 62 49751.5 63 42908.0 64 37385.5 65 31863.0 66 27147.0 67 22431.0 68 22431.0 69 18933.0 70 15435.0 71 13044.0 72 10653.0 73 8692.0 74 6731.0 75 6731.0 76 5473.5 77 4216.0 78 3291.5 79 2367.0 80 1862.0 81 1357.0 82 1357.0 83 1036.0 84 715.0 85 536.0 86 357.0 87 267.5 88 178.0 89 178.0 90 132.0 91 86.0 92 65.5 93 45.0 94 31.0 95 17.0 96 17.0 97 13.5 98 10.0 99 7.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1755326.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.22787593001627 #Duplication Level Percentage of deduplicated Percentage of total 1 79.8096738200328 42.48099416107773 2 11.624034815941299 12.374453659782258 3 3.634132750866907 5.803115015290574 4 1.5239039965388432 3.2445669142810196 5 0.815556150105424 2.170516078588662 6 0.4999464821868191 1.5966653595292857 7 0.3400214772111835 1.266903470177641 8 0.25575468320105427 1.0890622836757065 9 0.17842933314410223 0.8547672966182831 >10 1.1554988752362743 11.564728793303809 >50 0.10051742749787523 3.708184709497235 >100 0.05416460789524888 5.305018524175597 >500 0.004504543153453478 1.6418348846016502 >1k 0.003432032878821698 3.3820885223692683 >5k 1.0725102746317806E-4 0.450705369051809 >10k+ 3.2175308238953414E-4 3.066394957979591 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20772 1.1833699267258617 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 18657 1.0628794879127867 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 14285 0.8138089448911484 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7895 0.44977400209419793 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4189 0.23864512916688982 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3939 0.224402760512862 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3819 0.21756642355892866 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3467 0.1975131684940575 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3336 0.19005016731934696 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2852 0.16247694160514914 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2435 0.13872067069023075 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2306 0.1313716084647524 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2201 0.12538981363006074 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2104 0.11986377459229797 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1860 0.10596322278596682 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1807 0.10294384063131293 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1759 0.10020930584973958 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 5.696947461611119E-5 0.0 0.0 0.0 0.0 9 1.1393894923222239E-4 0.0 0.0 2.84847373080556E-4 0.0 10 1.1393894923222239E-4 0.0 0.0 2.84847373080556E-4 0.0 11 1.1393894923222239E-4 0.0 0.0 5.69694746161112E-4 0.0 12 1.1393894923222239E-4 0.0 0.0 7.406031700094456E-4 0.0 13 1.1393894923222239E-4 0.0 0.0 7.406031700094456E-4 0.0 14 2.2787789846444477E-4 0.0 0.0 0.0010254505430900016 0.0 15 2.84847373080556E-4 0.0 0.0 0.0014812063400188912 0.0 16 2.84847373080556E-4 0.0 0.0 0.0018799926623316694 0.0 17 2.84847373080556E-4 0.0 0.0 0.0023927179338766704 0.0 18 3.418168476966672E-4 0.0 0.0 0.0027345347815733376 0.0 19 3.418168476966672E-4 0.0 0.0 0.0034181684769666715 0.0 20 3.418168476966672E-4 0.0 0.0 0.0054121000885305635 0.0 21 3.418168476966672E-4 0.0 0.0 0.008203604344720013 0.0 22 3.9878632231277834E-4 0.0 0.0 0.013046009687089464 0.0 23 3.9878632231277834E-4 0.0 0.0 0.017261750808681694 0.0 24 3.9878632231277834E-4 0.0 0.0 0.023984148813382813 0.0 25 3.9878632231277834E-4 0.0 0.0 0.029339279427297266 0.0 26 3.9878632231277834E-4 0.0 0.0 0.040391357502822835 0.0 27 3.9878632231277834E-4 0.0 0.0 0.10385535222517071 0.0 28 3.9878632231277834E-4 0.0 0.0 0.22765002056598033 0.0 29 3.9878632231277834E-4 0.0 0.0 0.3900699926965134 0.0 30 3.9878632231277834E-4 0.0 0.0 0.649622919047516 0.0 31 3.9878632231277834E-4 0.0 0.0 0.977539214937852 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5710 0.0 25.174255 1 TGCGACG 125 8.587449E-9 17.760002 22 CTAACGC 95 3.6085785E-6 17.526316 3 TAACGCC 85 2.7244407E-5 17.411764 4 CAATGCG 140 1.87174E-9 17.178572 19 GTATCAA 8695 0.0 16.48936 2 ACGCGAA 90 4.4481058E-5 16.444445 34 CGACGAG 135 2.2213499E-8 16.444445 24 GACGCGA 90 4.4481058E-5 16.444445 33 TATACCG 135 2.2213499E-8 16.444445 5 CTAATAC 410 0.0 15.792684 3 TGACGCG 95 7.063066E-5 15.578948 32 ACGACCC 95 7.063066E-5 15.578948 30 GTATTAG 275 0.0 15.472728 1 AAGACCG 145 5.3501935E-8 15.310346 5 TATACGG 145 5.3501935E-8 15.310346 2 ACGTTTA 85 5.3661526E-4 15.235294 26 CAGACGT 85 5.3661526E-4 15.235294 4 GTATTGG 370 0.0 15.0 1 TAATACT 400 0.0 14.8 4 >>END_MODULE