##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088718_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 768339 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.89740205820608 31.0 31.0 33.0 28.0 34.0 2 31.11497268783701 31.0 31.0 34.0 28.0 34.0 3 31.097164142390273 31.0 31.0 34.0 28.0 34.0 4 34.90781673193734 35.0 35.0 37.0 32.0 37.0 5 34.722116149251825 35.0 35.0 37.0 32.0 37.0 6 34.89033746822692 35.0 35.0 37.0 32.0 37.0 7 34.736100861729 35.0 35.0 37.0 32.0 37.0 8 34.82496398074287 35.0 35.0 37.0 32.0 37.0 9 36.28981868680361 38.0 35.0 39.0 32.0 39.0 10 35.99544732208049 37.0 35.0 39.0 30.0 39.0 11 36.18478301895387 38.0 35.0 39.0 32.0 39.0 12 35.95629663468859 37.0 35.0 39.0 30.0 39.0 13 36.061215166742805 37.0 35.0 39.0 31.0 39.0 14 36.78324021037589 38.0 36.0 40.0 31.0 41.0 15 36.85544792077455 38.0 36.0 40.0 31.0 41.0 16 36.663654975212765 38.0 36.0 40.0 31.0 41.0 17 36.77908319114349 38.0 36.0 40.0 31.0 41.0 18 36.741073927003576 38.0 36.0 40.0 31.0 41.0 19 36.82724292272031 39.0 36.0 40.0 31.0 41.0 20 36.6977102554992 39.0 35.0 40.0 30.0 41.0 21 36.61863578446493 38.0 35.0 40.0 30.0 41.0 22 36.46770501041858 38.0 35.0 40.0 30.0 41.0 23 36.268013207711704 38.0 35.0 40.0 30.0 41.0 24 36.08589828187818 38.0 34.0 40.0 29.0 41.0 25 36.24572486884045 38.0 35.0 40.0 30.0 41.0 26 36.055540588203904 38.0 35.0 40.0 29.0 41.0 27 35.88793227989208 38.0 34.0 40.0 29.0 41.0 28 35.6736505630978 38.0 34.0 40.0 27.0 41.0 29 35.535699736704764 38.0 34.0 40.0 27.0 41.0 30 35.282936308061934 38.0 34.0 40.0 27.0 41.0 31 35.062510168037804 38.0 34.0 40.0 26.0 41.0 32 34.86118887626425 37.0 33.0 40.0 25.0 41.0 33 34.6906079217637 37.0 33.0 40.0 25.0 41.0 34 34.46219702501109 37.0 33.0 40.0 25.0 41.0 35 34.27910206302166 37.0 33.0 40.0 24.0 41.0 36 34.07073830691921 37.0 33.0 40.0 23.0 41.0 37 33.93235798260924 37.0 33.0 40.0 23.0 41.0 38 33.69420659370408 37.0 32.0 40.0 21.0 41.0 39 33.51676278309444 37.0 32.0 40.0 20.0 41.0 40 33.28005086296544 37.0 31.0 40.0 18.0 41.0 41 33.09846174670295 37.0 31.0 40.0 18.0 41.0 42 32.76454273439198 36.0 31.0 40.0 15.0 41.0 43 32.35700908062717 36.0 30.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 1.0 14 7.0 15 7.0 16 36.0 17 70.0 18 147.0 19 329.0 20 644.0 21 1275.0 22 2142.0 23 3556.0 24 5346.0 25 7926.0 26 10987.0 27 14690.0 28 19033.0 29 23916.0 30 29391.0 31 34615.0 32 41624.0 33 50345.0 34 58735.0 35 71400.0 36 91446.0 37 114643.0 38 124855.0 39 61172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.79667698763176 24.544504444001934 16.194153882596094 20.464664685770213 2 21.84114043410526 25.841458002262023 31.646187425081894 20.671214138550823 3 22.853584160116824 24.790229312842378 32.552948633350645 19.803237893690152 4 16.954885799106904 18.851574630469102 33.249386013205104 30.944153557218883 5 12.170539306217698 40.900305724426325 33.720011609458844 13.20914335989713 6 32.13672610657535 37.78540461957547 12.920729001131011 17.157140272718163 7 24.647583944066355 34.56638280758884 21.17060308015082 19.61543016819399 8 27.67216033547692 35.3221689905107 18.43626315988125 18.569407514131132 9 24.39261836246761 14.423581257752113 22.17966288318047 39.0041374965998 10 16.70369459314183 29.454186238105834 32.63168991812208 21.210429250630256 11 33.21138195510055 22.743997115856413 22.98946168292902 21.05515924611402 12 19.957336540251113 28.937747530712354 31.278771479776506 19.826144449260028 13 32.503751599228984 21.28448510358058 26.57043310309642 19.641330194094014 14 19.546059747064774 24.232793077014183 28.94542643286362 27.275720743057423 15 22.354065067632906 30.684892996450785 26.09980750684268 20.861234429073626 16 20.500976782383816 28.88685853509974 28.17532365271059 22.436841029805855 17 21.087436665326113 27.850987649982624 28.22126691473425 22.84030876995701 18 21.90087968982441 25.99087121700187 30.66393870413971 21.44431038903401 19 21.941747067375207 25.298468514548915 32.70027943394778 20.0595049841281 20 22.64065731402415 24.88016357363091 32.468871162338495 20.010307950006442 21 21.539971288715005 25.69373674901313 33.1787140832367 19.587577879035166 22 20.127964349069877 26.144969863562828 32.56843658853709 21.158629198830205 23 21.192728730417173 26.298678057472024 33.16075326125578 19.347839950855025 24 21.105397487307034 26.355814295512786 31.230355350958366 21.30843286622181 25 20.89728622391939 26.961015905739522 32.022713932261674 20.118983938079417 26 20.740714710563957 27.58287682910798 31.90909221059975 19.76731624972831 27 19.856079152561566 27.289256434985077 31.831522283783592 21.023142128669768 28 20.277768016461483 27.194897044143275 31.97065357869378 20.55668136070146 29 20.263841871882075 26.51824259864461 31.5215028782868 21.69641265118652 30 20.67746138097897 27.061101935473797 32.75988853878301 19.501548144764225 31 21.299192153463512 27.046785338242625 32.17056533639448 19.48345717189938 32 21.001927534590852 26.924964110893757 31.42115654678469 20.651951807730704 33 20.6248804238754 27.045223527635585 31.671957300098004 20.65793874839101 34 19.73829260261421 27.32556853159868 32.60878336255221 20.3273555032349 35 19.347059045551507 28.896229398741962 31.75590462022623 20.000806935480302 36 21.602964316532155 26.45472896729178 31.51603654116217 20.426270175013894 37 20.578026105664296 27.515328520353645 31.483498820182238 20.42314655379982 38 20.694511146772456 25.96692345436064 32.5559421036808 20.78262329518611 39 19.91165357999529 25.871783158215315 33.35519868183185 20.861364579957545 40 18.898428948680206 26.353862032253993 32.59108284233913 22.15662617672668 41 20.29455748048713 25.55018032404967 32.73398851288298 21.421273682580217 42 19.474737062676763 27.270124255048877 31.608053216093417 21.647085466180943 43 19.645234720611604 27.162229172279424 31.047623509935068 22.144912597173906 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 355.0 1 299.0 2 243.0 3 334.0 4 425.0 5 425.0 6 819.5 7 1214.0 8 1414.5 9 1615.0 10 2772.0 11 3929.0 12 3929.0 13 7907.0 14 11885.0 15 19138.0 16 26391.0 17 23505.5 18 20620.0 19 20620.0 20 23086.0 21 25552.0 22 20172.0 23 14792.0 24 15715.0 25 16638.0 26 16638.0 27 17820.5 28 19003.0 29 20005.5 30 21008.0 31 22721.0 32 24434.0 33 24434.0 34 26648.5 35 28863.0 36 31259.0 37 33655.0 38 35105.5 39 36556.0 40 36556.0 41 37825.5 42 39095.0 43 41324.0 44 43553.0 45 46796.5 46 50040.0 47 50040.0 48 66341.5 49 82643.0 50 74860.0 51 67077.0 52 59603.5 53 52130.0 54 52130.0 55 46071.0 56 40012.0 57 34640.5 58 29269.0 59 26050.0 60 22831.0 61 22831.0 62 20074.0 63 17317.0 64 14862.0 65 12407.0 66 10501.5 67 8596.0 68 8596.0 69 7246.0 70 5896.0 71 4995.0 72 4094.0 73 3360.5 74 2627.0 75 2627.0 76 2125.0 77 1623.0 78 1262.5 79 902.0 80 704.5 81 507.0 82 507.0 83 379.0 84 251.0 85 198.5 86 146.0 87 106.5 88 67.0 89 67.0 90 57.5 91 48.0 92 33.0 93 18.0 94 12.5 95 7.0 96 7.0 97 5.5 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 768339.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.76735505445001 #Duplication Level Percentage of deduplicated Percentage of total 1 85.84099083278927 51.30488977329105 2 8.37521592155173 10.0112900728213 3 2.272919134242373 4.075390947189512 4 1.0018470428199238 2.395109916738767 5 0.5534976464510383 1.6540545178620822 6 0.3589643027549676 1.2872608160777543 7 0.2611259393507483 1.0924764711772066 8 0.2028591395227132 0.9699483374315371 9 0.1540926942130638 0.8288741489696081 >10 0.8642517833309036 9.66212717122938 >50 0.06924050409941612 2.855959640149175 >100 0.03669499947062957 4.40917157251561 >500 0.004805297549228484 1.9267198589256402 >1k 0.0028394940063622863 3.2611551457294814 >5k 2.18422615874022E-4 0.9632946567526458 >10k+ 4.36845231748044E-4 3.302276953139304 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 13111 1.7064082390715556 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 12185 1.5858885205618871 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 7379 0.9603833724436739 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4823 0.6277177131448488 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2722 0.3542707060295 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2696 0.350886783047587 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2613 0.34008425968224965 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1768 0.23010676277007935 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1658 0.21579016553890926 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1502 0.19548662764743166 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1456 0.1894996869871242 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1401 0.18234138837153913 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1160 0.15097502534688464 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1111 0.14459763203481796 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1059 0.1378297860709921 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1012 0.13171269452676487 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 959 0.12481469767901929 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 791 0.10294934918050497 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 789 0.10268904741266549 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 778 0.10125738768954849 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 1.3015088391972815E-4 0.0 10 0.0 0.0 0.0 1.3015088391972815E-4 0.0 11 0.0 1.3015088391972815E-4 0.0 1.3015088391972815E-4 0.0 12 0.0 1.3015088391972815E-4 0.0 2.603017678394563E-4 0.0 13 0.0 1.3015088391972815E-4 1.3015088391972815E-4 2.603017678394563E-4 0.0 14 0.0 1.3015088391972815E-4 1.3015088391972815E-4 3.9045265175918445E-4 0.0 15 0.0 2.603017678394563E-4 1.3015088391972815E-4 7.809053035183689E-4 0.0 16 0.0 2.603017678394563E-4 1.3015088391972815E-4 0.0013015088391972814 0.0 17 0.0 3.9045265175918445E-4 1.3015088391972815E-4 0.0023427159105551066 0.0 18 0.0 3.9045265175918445E-4 1.3015088391972815E-4 0.0026030176783945628 0.0 19 0.0 3.9045265175918445E-4 1.3015088391972815E-4 0.003644224749752388 0.0 20 0.0 3.9045265175918445E-4 1.3015088391972815E-4 0.006247242428146951 0.0 21 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.009891467177899339 0.0 22 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.015097502534688464 0.0 23 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.01965278347187895 0.0 24 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.02537942236434699 0.0 25 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.02928394888193883 0.0 26 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.03735330368496197 0.0 27 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.0920166749312478 0.0 28 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.20147356830773916 0.0 29 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.34047471233400883 0.0 30 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.553922161962363 0.0 31 0.0 5.206035356789126E-4 1.3015088391972815E-4 0.7945711463299403 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGCTC 25 0.0054952246 29.599998 8 ACGTTTA 55 6.2572144E-7 26.90909 26 ATCTATG 35 8.866709E-4 26.42857 7 GTATACT 65 9.383439E-8 25.615385 4 GGTATCA 3390 0.0 25.594397 1 CGTTTAT 65 2.680923E-6 22.76923 27 GGGTAAG 50 2.700973E-4 22.199999 1 CGAATTA 45 0.0038246699 20.555557 12 ATTAGAC 55 5.140961E-4 20.181818 3 TCACGTT 75 9.259216E-6 19.733334 24 GTATTGG 160 1.8189894E-12 18.5 1 TTATGCG 60 9.2330156E-4 18.5 4 GACCCTC 270 0.0 18.5 7 TAAGGTG 60 9.2330156E-4 18.5 5 CAGCGCG 50 0.007032813 18.499998 9 TGAGTCG 50 0.007032813 18.499998 10 TTGCCGT 50 0.007032813 18.499998 31 CGAACTA 85 2.7212125E-5 17.411764 24 GTATCAA 5000 0.0 17.39 2 TGGACCC 300 0.0 17.266666 5 >>END_MODULE