##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088717_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3142088 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.495853394303406 31.0 31.0 34.0 30.0 34.0 2 31.700465422992608 31.0 31.0 34.0 30.0 34.0 3 31.768092109450787 31.0 31.0 34.0 30.0 34.0 4 35.49763437561265 37.0 35.0 37.0 33.0 37.0 5 35.385132115968744 37.0 35.0 37.0 33.0 37.0 6 35.43916561216618 37.0 35.0 37.0 33.0 37.0 7 35.289622060235104 37.0 35.0 37.0 32.0 37.0 8 35.33283950035772 37.0 35.0 37.0 32.0 37.0 9 36.909115530818994 39.0 37.0 39.0 33.0 39.0 10 36.732538681284545 39.0 35.0 39.0 32.0 39.0 11 36.8299929855561 39.0 37.0 39.0 32.0 39.0 12 36.67795109494069 39.0 35.0 39.0 32.0 39.0 13 36.72161696298767 39.0 35.0 39.0 32.0 39.0 14 37.65177200638556 39.0 36.0 41.0 32.0 41.0 15 37.675126858318414 39.0 37.0 41.0 32.0 41.0 16 37.55647550291398 39.0 36.0 41.0 32.0 41.0 17 37.62461872487339 39.0 36.0 41.0 32.0 41.0 18 37.59168266452117 39.0 36.0 41.0 32.0 41.0 19 37.65442056365067 39.0 37.0 41.0 32.0 41.0 20 37.53948902767841 39.0 36.0 41.0 32.0 41.0 21 37.47695226868248 39.0 36.0 41.0 32.0 41.0 22 37.346323527539646 39.0 36.0 41.0 31.0 41.0 23 37.16685974422104 39.0 36.0 41.0 31.0 41.0 24 37.00057955092283 39.0 36.0 41.0 31.0 41.0 25 37.176167567553804 39.0 36.0 41.0 31.0 41.0 26 37.035757114377446 39.0 36.0 41.0 31.0 41.0 27 36.91261097715914 39.0 35.0 41.0 31.0 41.0 28 36.736574214344095 39.0 35.0 41.0 30.0 41.0 29 36.611705019082855 39.0 35.0 40.0 30.0 41.0 30 36.39444534971649 38.0 35.0 40.0 30.0 41.0 31 36.208758634385795 38.0 35.0 40.0 30.0 41.0 32 36.02510846290747 38.0 35.0 40.0 30.0 41.0 33 35.87380779914503 38.0 35.0 40.0 29.0 41.0 34 35.68016013555317 38.0 35.0 40.0 28.0 41.0 35 35.53062804097148 38.0 34.0 40.0 27.0 41.0 36 35.319298186428895 38.0 34.0 40.0 26.0 41.0 37 35.218599224464754 38.0 34.0 40.0 25.0 41.0 38 34.99570890439733 38.0 34.0 40.0 24.0 41.0 39 34.87210956535909 38.0 33.0 40.0 24.0 41.0 40 34.67738777526282 38.0 33.0 40.0 23.0 41.0 41 34.51949149737372 38.0 33.0 40.0 23.0 41.0 42 34.22691025840142 38.0 33.0 40.0 21.0 41.0 43 33.854268562815555 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 2.0 14 10.0 15 18.0 16 34.0 17 106.0 18 254.0 19 571.0 20 1296.0 21 2561.0 22 4796.0 23 8322.0 24 13594.0 25 20469.0 26 30097.0 27 41653.0 28 56225.0 29 72514.0 30 90611.0 31 111562.0 32 136303.0 33 166785.0 34 202663.0 35 247359.0 36 317653.0 37 437302.0 38 566524.0 39 612803.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.36179508657937 21.56623239069052 14.483362655660823 22.588609867069287 2 19.077727931235536 24.114060459159642 34.477551233447315 22.33066037615751 3 20.087947886882862 24.477926779899224 33.209477264799716 22.224648068418198 4 13.884461542770286 16.673562293608583 36.07543773439828 33.36653842922286 5 12.540641764329962 39.02239529892225 34.58127207131054 13.85569086543725 6 31.89220034575734 37.42119889703916 13.49497531577728 17.19162544142621 7 25.402184789222964 33.72209817166165 21.43822833733492 19.437488701780474 8 27.181765755764957 34.37058414659296 18.988806169655337 19.45884392798674 9 24.423440718401267 14.46993209610934 22.156699621398253 38.94992756409114 10 16.381686318142584 28.28195773001902 33.177969554003575 22.158386397834814 11 32.563823801243 22.802925952423994 23.646314170704322 20.98693607562869 12 20.74365835711794 27.89336263020005 31.091968143476567 20.271010869205448 13 31.62737644521732 21.205612318942055 26.49120584783112 20.6758053880095 14 20.019744832098908 23.78055611427815 28.579148642558707 27.620550411064237 15 22.48835805999068 29.884777256397655 26.04697895157615 21.57988573203551 16 21.044922993881777 28.78334406929405 27.387838914759865 22.783894022064306 17 21.152749381939653 27.205412451847305 27.73776546041995 23.90407270579309 18 22.45032602524181 25.89758784604378 30.139034934731303 21.51305119398311 19 22.300743963886436 25.14385338666517 31.740995159906404 20.814407489541985 20 23.16049073100435 24.842206838255326 31.231174938448575 20.76612749229175 21 21.91300816527099 25.733143056464364 31.989651467431845 20.364197310832797 22 20.54531890895481 26.17686073719132 31.566366059766626 21.711454294087243 23 21.56114023541034 26.225108908471057 32.220835317152165 19.992915538966447 24 21.396727271801428 26.43942499382576 30.179835828913763 21.984011905459045 25 21.320217638716677 26.691423028253823 31.21939932936315 20.76896000366635 26 21.003103668643273 27.43210883972696 30.994389717920058 20.57039777370971 27 20.011565557680118 27.419219321673992 30.876347193331316 21.692867927314577 28 20.52584141500811 27.07919065283977 30.803242939090186 21.591724993061938 29 20.72052087656361 26.896509582163198 30.398862157902645 21.98410738337055 30 20.86593373578334 27.24198049195312 31.882016035196976 20.010069737066562 31 21.558785113593252 27.063564101323706 31.427763958234145 19.949886826848896 32 21.15602745690127 26.909526404098166 30.59564213351122 21.338804005489344 33 20.664061604894577 26.83559467462401 31.158898159440472 21.34144556104094 34 19.914750955415634 27.344746550701316 31.783069092908917 20.95743340097413 35 19.549929855561015 29.215795356463598 30.75999144517913 20.474283342796255 36 21.67046244408177 27.032406476203086 30.541378853806766 20.755752225908378 37 20.815712354332533 27.59006113132414 30.58841763820746 21.00580887613587 38 20.610498496541155 26.177879168247358 31.799141208012 21.41248112719949 39 20.108030074269085 26.056622220637998 32.479739587178976 21.35560811791395 40 19.114136841488843 26.53916758537635 32.15193209101718 22.194763482117626 41 20.474219690855254 25.604438831757736 32.0438829211658 21.877458556221214 42 19.26620132854331 27.455119016399287 31.44501363424576 21.833666020811638 43 19.59722324772572 27.205953493345824 30.760150575031638 22.436672683896823 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1313.0 1 1171.0 2 1029.0 3 1970.5 4 2912.0 5 2912.0 6 4662.5 7 6413.0 8 6926.0 9 7439.0 10 11561.0 11 15683.0 12 15683.0 13 29399.5 14 43116.0 15 67403.0 16 91690.0 17 83883.0 18 76076.0 19 76076.0 20 82577.0 21 89078.0 22 71839.5 23 54601.0 24 60388.0 25 66175.0 26 66175.0 27 71638.0 28 77101.0 29 81281.0 30 85461.0 31 92829.0 32 100197.0 33 100197.0 34 110431.0 35 120665.0 36 130306.5 37 139948.0 38 145498.5 39 151049.0 40 151049.0 41 153143.0 42 155237.0 43 164446.0 44 173655.0 45 187856.5 46 202058.0 47 202058.0 48 263205.0 49 324352.0 50 302161.0 51 279970.0 52 253325.5 53 226681.0 54 226681.0 55 203114.0 56 179547.0 57 154688.5 58 129830.0 59 115612.0 60 101394.0 61 101394.0 62 87937.0 63 74480.0 64 64042.0 65 53604.0 66 45922.5 67 38241.0 68 38241.0 69 32775.0 70 27309.0 71 23011.0 72 18713.0 73 15225.0 74 11737.0 75 11737.0 76 9396.5 77 7056.0 78 5490.0 79 3924.0 80 3023.0 81 2122.0 82 2122.0 83 1600.0 84 1078.0 85 817.0 86 556.0 87 438.0 88 320.0 89 320.0 90 251.0 91 182.0 92 121.0 93 60.0 94 43.0 95 26.0 96 26.0 97 16.5 98 7.0 99 5.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3142088.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.78156217262422 #Duplication Level Percentage of deduplicated Percentage of total 1 76.47590718493397 34.24710592309961 2 12.622106360154211 11.30475281433443 3 4.419042685982289 5.9367490435738866 4 2.0396687327921597 3.6535820867635898 5 1.0856791540487911 2.4309204268279005 6 0.6693975801149592 1.7986001611273352 7 0.4399461265957791 1.379103237452786 8 0.3123657710149269 1.119058175624372 9 0.23131894349169463 0.9322941284711166 >10 1.449687762256045 12.428678024378021 >50 0.14983254655963682 4.679532042590858 >100 0.09300283675704735 7.980472065362094 >500 0.006556668683309002 1.9973036204259036 >1k 0.004703697098843262 4.233586651984414 >5k 4.988769650288308E-4 1.6561005107960922 >10k+ 2.850725514450462E-4 4.222161087187724 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 44678 1.421920710050132 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 39907 1.270079004789172 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31059 0.9884828177950458 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16650 0.5299024088440553 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9220 0.29343544802055194 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9025 0.28722938377282875 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8003 0.25470324192065913 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7316 0.2328388001863729 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6913 0.2200129340744117 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6368 0.20266778015128792 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5046 0.16059384714877495 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4793 0.15254187661198543 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4751 0.15120518585093734 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4510 0.14353512696016152 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4135 0.13160038802223234 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3875 0.12332563569193479 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3683 0.11721504935571506 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3600 0.11457349380412005 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3254 0.10356170801072409 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 6.365194100228893E-5 0.0 0.0 0.0 0.0 6 9.547791150343338E-5 0.0 0.0 0.0 0.0 7 9.547791150343338E-5 0.0 0.0 0.0 0.0 8 1.9095582300686676E-4 0.0 0.0 0.0 0.0 9 1.9095582300686676E-4 0.0 0.0 1.591298525057223E-4 0.0 10 3.182597050114446E-4 0.0 0.0 2.2278179350801125E-4 0.0 11 3.500856755125891E-4 0.0 0.0 4.13737616514878E-4 0.0 12 3.500856755125891E-4 0.0 0.0 5.728674690206003E-4 0.0 13 4.13737616514878E-4 0.0 0.0 6.365194100228892E-4 0.0 14 4.455635870160225E-4 0.0 0.0 7.319973215263227E-4 0.0 15 5.092155280183114E-4 0.0 0.0 0.0010820829970389118 0.0 16 5.410414985194559E-4 0.0 0.0 0.001527646584054934 0.0 17 5.410414985194559E-4 0.0 0.0 0.002482425699089268 0.0 18 5.728674690206003E-4 0.0 0.0 0.003023467197608724 0.0 19 6.046934395217447E-4 0.0 0.0 0.003978246312643058 0.0 20 6.683453805240337E-4 0.0 0.0 0.006747105746242626 0.0 21 7.319973215263227E-4 0.0 0.0 0.011998390878931462 0.0 22 7.63823292027467E-4 0.0 0.0 0.019063756330185533 0.0 23 7.956492625286115E-4 0.0 0.0 0.023137480554332023 0.0 24 8.27475233029756E-4 0.0 0.0 0.03096666929761356 0.0 25 8.27475233029756E-4 0.0 0.0 0.0359315206957921 0.0 26 8.27475233029756E-4 0.0 0.0 0.04640226499066862 0.0 27 9.229531445331894E-4 0.0 0.0 0.113236803043072 0.0 28 9.229531445331894E-4 0.0 0.0 0.2443598015077872 0.0 29 0.0010184310560366228 0.0 0.0 0.4100776299072464 0.0 30 0.0010184310560366228 0.0 0.0 0.6425663444181067 0.0 31 0.0010184310560366228 0.0 0.0 0.900834095034894 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12980 0.0 23.303158 1 GTATTGG 1055 0.0 18.938387 1 ATTGGAC 1060 0.0 17.801888 3 GGACCCT 1420 0.0 17.327465 6 ACGTTTA 185 1.8189894E-12 17.0 26 TTGGACC 1585 0.0 16.690851 4 CTAATAC 610 0.0 15.770493 3 TATTGGA 1240 0.0 15.665323 2 TATACCG 190 2.7284841E-11 15.578948 5 GTATCAA 19820 0.0 15.298435 2 TGGACCC 1635 0.0 15.2752285 5 TAGGTCG 165 1.6481863E-8 14.575757 21 GACCCTC 1645 0.0 14.5076 7 TAATACT 665 0.0 13.631579 4 AATACTG 760 0.0 13.631579 5 CTCTAAT 630 0.0 13.5079365 1 TCTAATA 660 0.0 13.454545 2 CGACGAA 305 0.0 13.344262 10 ACCCTCG 1830 0.0 13.24317 8 GTATTAT 295 0.0 13.169492 1 >>END_MODULE