##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088716_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2740890 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.468322333256715 31.0 31.0 34.0 30.0 34.0 2 31.672811021237628 31.0 31.0 34.0 30.0 34.0 3 31.739077452944116 31.0 31.0 34.0 30.0 34.0 4 35.471618707792 37.0 35.0 37.0 33.0 37.0 5 35.358197884628716 37.0 35.0 37.0 33.0 37.0 6 35.41179543870786 37.0 35.0 37.0 33.0 37.0 7 35.25991593971301 37.0 35.0 37.0 32.0 37.0 8 35.30674343005374 37.0 35.0 37.0 32.0 37.0 9 36.877081531911166 39.0 37.0 39.0 33.0 39.0 10 36.69797693449938 39.0 35.0 39.0 32.0 39.0 11 36.79929584915848 39.0 37.0 39.0 32.0 39.0 12 36.645861015947375 39.0 35.0 39.0 32.0 39.0 13 36.692893549175636 39.0 35.0 39.0 32.0 39.0 14 37.62385210643258 39.0 36.0 41.0 32.0 41.0 15 37.64396418681523 39.0 36.0 41.0 32.0 41.0 16 37.520642929851256 39.0 36.0 41.0 32.0 41.0 17 37.58921810068992 39.0 36.0 41.0 32.0 41.0 18 37.559255935115964 39.0 36.0 41.0 32.0 41.0 19 37.6228549850596 39.0 37.0 41.0 32.0 41.0 20 37.50978696700707 39.0 36.0 41.0 32.0 41.0 21 37.45120563028797 39.0 36.0 41.0 32.0 41.0 22 37.324940439054465 39.0 36.0 41.0 31.0 41.0 23 37.15145518426497 39.0 36.0 41.0 31.0 41.0 24 36.98917504898044 39.0 36.0 41.0 31.0 41.0 25 37.15917275045697 39.0 36.0 41.0 31.0 41.0 26 37.01158054500545 39.0 36.0 41.0 31.0 41.0 27 36.88744130556133 39.0 35.0 41.0 31.0 41.0 28 36.70066766634196 39.0 35.0 41.0 30.0 41.0 29 36.58596988569406 39.0 35.0 40.0 30.0 41.0 30 36.365809645771996 38.0 35.0 40.0 30.0 41.0 31 36.187763098847455 38.0 35.0 40.0 30.0 41.0 32 36.013023506963066 38.0 35.0 40.0 30.0 41.0 33 35.857419670253094 38.0 35.0 40.0 29.0 41.0 34 35.66547982589597 38.0 34.0 40.0 27.0 41.0 35 35.521642605139206 38.0 34.0 40.0 27.0 41.0 36 35.30079098395047 38.0 34.0 40.0 26.0 41.0 37 35.20914411012481 38.0 34.0 40.0 25.0 41.0 38 34.988094742948455 38.0 34.0 40.0 24.0 41.0 39 34.86990685507262 38.0 33.0 40.0 24.0 41.0 40 34.67047783749074 38.0 33.0 40.0 23.0 41.0 41 34.51142548588232 38.0 33.0 40.0 22.0 41.0 42 34.22702479851435 38.0 33.0 40.0 21.0 41.0 43 33.850953887241005 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 5.0 14 6.0 15 17.0 16 35.0 17 88.0 18 214.0 19 537.0 20 1100.0 21 2339.0 22 4281.0 23 7329.0 24 12010.0 25 18578.0 26 26566.0 27 37230.0 28 49157.0 29 64116.0 30 79642.0 31 98207.0 32 119970.0 33 145678.0 34 177536.0 35 215545.0 36 276624.0 37 380050.0 38 492345.0 39 531683.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.17093352889025 21.670807657366765 14.588910901203626 22.56934791253936 2 19.02170462878846 24.07119585244209 34.63061268420112 22.276486834568335 3 20.200080995589023 24.657647698375346 33.00282025181602 22.139451054219613 4 13.895668925057189 16.797135237094523 35.80402715906148 33.503168678786814 5 12.541875084370405 39.00948232143574 34.58993246719132 13.858710127002544 6 32.08384867688962 37.12863340009997 13.541294980827395 17.246222942183014 7 25.311887744491752 33.671362221760084 21.520746910675 19.496003123073162 8 27.044864989109378 34.55147780465469 19.040202270065564 19.363454936170367 9 24.378723699236378 14.598871169583601 22.21676170878802 38.805643422391995 10 16.446738103316804 28.313467523322718 33.202317495412075 22.037476877948404 11 32.47507196567538 22.798871899273593 23.62714300829293 21.0989131267581 12 20.67051213292033 27.84996844090788 31.27965733758013 20.19986208859166 13 31.65303970608087 21.269478162202788 26.571770483310164 20.505711648406173 14 20.0323982356096 23.720871687663497 28.553644983928578 27.693085092798324 15 22.388932062213367 29.98113751372729 26.12505427069309 21.504876153366244 16 20.986176023116577 28.726946356840294 27.50172389260423 22.785153727438896 17 21.091652711345585 27.311968010390785 27.705818183144892 23.89056109511874 18 22.417827785865175 25.928475787061867 30.25010124448628 21.40359518258668 19 22.085089149874676 25.19072272145179 31.84031464232421 20.883873486349323 20 23.114353366972043 24.781220698386292 31.448726508542848 20.655699426098824 21 21.70802184691834 25.823655819824946 32.11788871497944 20.350433618277275 22 20.42664973785887 26.146032857940305 31.604515321665588 21.822802082535233 23 21.445917202076696 26.37880396513541 32.312752427131336 19.86252640565656 24 21.3232198300552 26.434479311464525 30.26246948983724 21.979831368643033 25 21.226900751215847 26.85135120344122 31.14367960771866 20.778068437624274 26 20.98555578662405 27.49471886868864 31.08402745093747 20.43569789374984 27 20.014958644819746 27.423026827052528 30.87858323391307 21.683431294214653 28 20.37991309392205 27.052052435522768 31.022040286184417 21.54599418437077 29 20.599476812276304 26.881669822575876 30.47772803724338 22.04112532790444 30 20.83407214444943 27.24268394572566 32.00569887883133 19.917545030993583 31 21.531619291543986 26.9768213974293 31.532713826530802 19.958845484495914 32 21.07501577954606 26.95649953117418 30.61534756958506 21.353137119694697 33 20.604292766218272 26.78695606171718 31.24262557052636 21.366125601538187 34 19.813856083243035 27.283473616234144 31.935867546672796 20.96680275385003 35 19.535661774095274 29.105910853773775 30.788867849494146 20.56955952263681 36 21.56992801608237 26.853284881917915 30.754134605912675 20.822652496087038 37 20.710791020434968 27.521680913863744 30.69692691060203 21.070601155099254 38 20.50520086541233 26.089408914622624 32.03835250593785 21.367037714027195 39 19.95154858458384 25.874186851716047 32.802994647723914 21.3712699159762 40 19.015210387866716 26.418754492154008 32.31337266362386 22.252662456355417 41 20.326390333066996 25.589607755145227 32.27758136955515 21.806420542232633 42 19.121234343589126 27.41810141961188 31.578903202974217 21.88176103382478 43 19.383156565932964 27.339148962563254 30.869279686525182 22.408414784978604 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 964.0 1 901.0 2 838.0 3 1637.0 4 2436.0 5 2436.0 6 3896.5 7 5357.0 8 6073.5 9 6790.0 10 10572.5 11 14355.0 12 14355.0 13 26910.0 14 39465.0 15 60975.5 16 82486.0 17 74966.5 18 67447.0 19 67447.0 20 72264.5 21 77082.0 22 61169.5 23 45257.0 24 50072.5 25 54888.0 26 54888.0 27 60480.0 28 66072.0 29 70261.5 30 74451.0 31 80773.5 32 87096.0 33 87096.0 34 95194.5 35 103293.0 36 111769.0 37 120245.0 38 126288.5 39 132332.0 40 132332.0 41 135658.0 42 138984.0 43 147504.5 44 156025.0 45 168774.5 46 181524.0 47 181524.0 48 236447.5 49 291371.0 50 269021.0 51 246671.0 52 221866.5 53 197062.0 54 197062.0 55 174387.5 56 151713.0 57 129657.0 58 107601.0 59 95861.0 60 84121.0 61 84121.0 62 73573.5 63 63026.0 64 54662.0 65 46298.0 66 39584.0 67 32870.0 68 32870.0 69 27964.0 70 23058.0 71 19593.0 72 16128.0 73 13143.5 74 10159.0 75 10159.0 76 8176.5 77 6194.0 78 4885.5 79 3577.0 80 2709.0 81 1841.0 82 1841.0 83 1360.0 84 879.0 85 687.5 86 496.0 87 369.0 88 242.0 89 242.0 90 179.5 91 117.0 92 83.5 93 50.0 94 35.5 95 21.0 96 21.0 97 13.5 98 6.0 99 4.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2740890.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.523901420857115 #Duplication Level Percentage of deduplicated Percentage of total 1 78.003055727044 37.07009530897663 2 12.284926483834214 11.676552703604282 3 4.049819159654471 5.773896195471526 4 1.7813479291007899 3.3862641351533567 5 0.9445421429442586 2.244416384456404 6 0.5696578590874284 1.6243418363332478 7 0.3888945172639652 1.293724929109515 8 0.26341862820376927 1.0014944735338676 9 0.20868865723393046 0.8925929256632716 >10 1.285257504887532 11.667226097186619 >50 0.1295969015499616 4.296680524661679 >100 0.08007320138097028 7.302385436332967 >500 0.0052449465568632225 1.704977266111779 >1k 0.004705025587772658 4.278260199017814 >5k 4.627894020759991E-4 1.5080616108418174 >10k+ 3.085262680506661E-4 4.279029973545115 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 39349 1.4356285732006757 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35176 1.2833787565352859 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27081 0.9880367325941574 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15129 0.5519739938487134 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8163 0.2978229699112332 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7522 0.2744364056930413 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7216 0.2632721488275706 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6389 0.23309946769115142 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6101 0.22259193181776724 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5750 0.20978587247208022 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4296 0.1567374101113142 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4174 0.15228630116495007 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4118 0.15024316918956981 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3819 0.13933430382102166 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3667 0.13378865988784666 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3586 0.13083341542345733 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3289 0.11999751905402989 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3246 0.11842868557293434 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2933 0.1070090372105411 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2770 0.10106206378220214 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 3.648449956036178E-5 0.0 8 7.296899912072356E-5 0.0 0.0 3.648449956036178E-5 0.0 9 1.0945349868108534E-4 0.0 0.0 2.1890699736217068E-4 0.0 10 1.0945349868108534E-4 0.0 0.0 2.918759964828942E-4 0.0 11 1.824224978018089E-4 0.0 0.0 5.837519929657885E-4 0.0 12 1.824224978018089E-4 0.0 0.0 8.39143489888321E-4 0.0 13 2.5539149692253247E-4 0.0 0.0 9.85081488129768E-4 0.0 14 3.2836049604325604E-4 0.0 0.0 0.0013499264837333858 0.0 15 4.013294951639796E-4 0.0 0.0 0.00164180248021628 0.0 16 4.013294951639796E-4 0.0 0.0 0.002517430469664963 0.0 17 4.013294951639796E-4 0.0 0.0 0.0035389964573550926 0.0 18 4.013294951639796E-4 0.0 0.0 0.004268686448562329 0.0 19 4.013294951639796E-4 0.0 0.0 0.005582128432735352 0.0 20 4.013294951639796E-4 0.0 0.0 0.008938702392288635 0.0 21 4.013294951639796E-4 0.0 0.0 0.014083016830299647 0.0 22 4.013294951639796E-4 0.0 0.0 0.021817730737096346 0.0 23 4.013294951639796E-4 0.0 0.0 0.026925560675546995 0.0 24 4.013294951639796E-4 0.0 0.0 0.03462379008278333 0.0 25 4.013294951639796E-4 0.0 0.0 0.04108154650496736 0.0 26 4.013294951639796E-4 0.0 0.0 0.05348627635549037 0.0 27 4.013294951639796E-4 0.0 0.0 0.12430269000215259 0.0 28 4.742984942847031E-4 0.0 0.0 0.266336846790641 0.0 29 4.742984942847031E-4 0.0 0.0 0.44554870863113805 0.0 30 5.107829938450649E-4 0.0 0.0 0.7000280930646615 0.0 31 5.107829938450649E-4 0.0 0.0 1.0079937538536752 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATTCCG 75 4.638423E-10 27.133333 5 GGTATCA 11535 0.0 22.29302 1 GTATTGG 975 0.0 17.646154 1 CGTACCG 65 0.0015806885 17.076923 5 TTGGACC 1365 0.0 16.805862 4 CGTTTAT 205 0.0 16.243902 27 ATTGGAC 1070 0.0 15.906542 3 TAATACT 635 0.0 15.732285 4 TCACGTT 225 0.0 15.622222 24 GGACCCT 1445 0.0 15.619377 6 CGACGAG 190 2.7284841E-11 15.578948 24 CTAATAC 500 0.0 15.54 3 TGGACCC 1500 0.0 15.046668 5 ACGTTTA 210 9.094947E-12 14.97619 26 GTATACG 225 1.8189894E-12 14.8 1 ACCGTCC 75 0.0041063335 14.8 8 GTATCAA 17630 0.0 14.6174135 2 TGCGACG 165 1.6478225E-8 14.575757 22 CAATGCG 165 1.6478225E-8 14.575757 19 ATTTCGG 195 6.7484507E-10 14.230768 29 >>END_MODULE