##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088715_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1000691 Sequences flagged as poor quality 0 Sequence length 43 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.88108417083795 31.0 31.0 31.0 28.0 34.0 2 31.083097579572517 31.0 31.0 34.0 28.0 34.0 3 31.034049471814974 31.0 31.0 34.0 27.0 34.0 4 34.84523294403567 35.0 35.0 37.0 32.0 37.0 5 34.707074411581594 35.0 35.0 37.0 32.0 37.0 6 34.88920855688719 35.0 35.0 37.0 32.0 37.0 7 34.712565617158546 35.0 35.0 37.0 32.0 37.0 8 34.823412022292594 35.0 35.0 37.0 32.0 37.0 9 36.26153427981265 38.0 35.0 39.0 32.0 39.0 10 35.99697908745057 37.0 35.0 39.0 31.0 39.0 11 36.18080606301046 38.0 35.0 39.0 32.0 39.0 12 35.94144446187684 37.0 35.0 39.0 30.0 39.0 13 36.05050709959418 37.0 35.0 39.0 31.0 39.0 14 36.71404059794682 38.0 36.0 40.0 31.0 41.0 15 36.79088250019237 38.0 36.0 40.0 31.0 41.0 16 36.57470088169075 38.0 35.0 40.0 30.0 41.0 17 36.74337632695807 38.0 36.0 40.0 31.0 41.0 18 36.72439943998697 38.0 36.0 40.0 31.0 41.0 19 36.83013537645487 39.0 36.0 40.0 31.0 41.0 20 36.71321516831869 39.0 35.0 40.0 30.0 41.0 21 36.63977691415232 38.0 35.0 40.0 30.0 41.0 22 36.49684567963537 38.0 35.0 40.0 30.0 41.0 23 36.28424058975248 38.0 35.0 40.0 30.0 41.0 24 36.11288799439587 38.0 34.0 40.0 29.0 41.0 25 36.259091967450495 38.0 35.0 40.0 30.0 41.0 26 36.04982357191181 38.0 35.0 40.0 29.0 41.0 27 35.88920955619667 38.0 34.0 40.0 29.0 41.0 28 35.67306691076466 38.0 34.0 40.0 27.0 41.0 29 35.54290685136571 38.0 34.0 40.0 27.0 41.0 30 35.26797383008341 38.0 34.0 40.0 27.0 41.0 31 35.003490588003686 37.0 33.0 40.0 26.0 41.0 32 34.79343773452544 37.0 33.0 40.0 25.0 41.0 33 34.610630054632246 37.0 33.0 40.0 25.0 41.0 34 34.35760589432702 37.0 33.0 40.0 24.0 41.0 35 34.171444531828506 37.0 33.0 40.0 24.0 41.0 36 33.94077892176506 37.0 33.0 40.0 23.0 41.0 37 33.770941279575815 37.0 33.0 40.0 22.0 41.0 38 33.49174620337347 36.0 32.0 40.0 21.0 41.0 39 33.303484292353986 36.0 32.0 40.0 19.0 41.0 40 33.0504361486213 36.0 31.0 40.0 18.0 41.0 41 32.831027759817964 36.0 31.0 40.0 16.0 41.0 42 32.43569693341901 36.0 30.0 39.0 15.0 41.0 43 32.01634270718933 35.0 30.0 39.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 4.0 14 3.0 15 12.0 16 23.0 17 78.0 18 213.0 19 452.0 20 847.0 21 1555.0 22 2878.0 23 4651.0 24 7137.0 25 10502.0 26 14544.0 27 19488.0 28 25250.0 29 31864.0 30 38870.0 31 46068.0 32 55401.0 33 65238.0 34 78652.0 35 94023.0 36 121206.0 37 150920.0 38 157515.0 39 73295.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.73374398290781 24.189584996767234 16.286645927663983 19.790025092660972 2 21.97241705981167 26.070585225609104 31.55879287412398 20.398204840455243 3 22.8630016658489 24.6966346254738 33.42050643005683 19.01985727862047 4 16.15953376217034 18.619833694916814 33.47426927992757 31.746363262985277 5 11.541524806358806 41.11798747065777 33.84351413173497 13.496973591248448 6 31.665019471545165 37.44402617791106 12.14151021644044 18.749444134103335 7 24.127827671079284 35.286217223898284 20.670516672978973 19.91543843204346 8 28.27865944632259 34.8133439793103 18.05222591189488 18.85577066247223 9 24.00711108623941 13.987734475477446 22.37963567175082 39.62551876653232 10 16.977968223957244 29.14915793186908 32.133995409172265 21.738878435001414 11 32.503739915718235 22.206355408412787 23.66244924756993 21.627455428299044 12 20.22042768447003 29.327134949749723 31.37811772065503 19.074319645125218 13 33.643252512513854 20.54480354075334 27.162130967501458 18.64981297923135 14 19.252396593953577 24.20237615807477 29.542086418284963 27.00314082968669 15 22.11781658873718 30.08191339784209 27.42834701221456 20.371923001206167 16 19.859177308479843 28.64710485054827 28.961787404903212 22.531930436068677 17 20.882969867821334 27.041114589818438 28.349410557304903 23.72650498505533 18 22.22224442909949 24.753795127566853 31.56199066445086 21.461969778882793 19 22.1707799910262 23.64146374854975 33.86919638529776 20.318559875126287 20 23.145706316934998 23.163194232785145 34.0398784439952 19.651221006284658 21 21.564199138395367 24.35007409879773 35.221162176935735 18.864564585871165 22 19.274381402450906 24.60449829168045 34.72060805983065 21.400512246037987 23 21.036463803511772 24.88550411665539 35.80915587329155 18.26887620654128 24 20.88047159412846 24.87870881221076 32.591079564021264 21.64974002963952 25 20.58587516026426 25.895606136159916 33.661040221207145 19.857478482368684 26 20.3774192033305 26.682462418468837 33.44399020276988 19.496128175430776 27 19.02585313548338 26.68975737765204 33.24902492377767 21.035364563086905 28 19.63663108791825 26.302824748099063 33.4263024250243 20.63424173895838 29 19.899349549461324 25.254449175619648 32.85050030428974 21.995700970629294 30 20.417491513364265 25.872322225342288 34.68233450685576 19.027851754437684 31 21.130998480050287 26.09736671959676 33.78665342248507 18.984981377867893 32 20.978104130046137 25.74021351246289 32.89027282148036 20.391409536010617 33 20.4963370311115 26.005130454855696 33.29739150247179 20.20114101156101 34 19.04144236332694 26.91859924791969 34.17918218511009 19.860776203643283 35 18.555777957431417 29.271973066610972 32.80453206834078 19.367716907616835 36 21.815425540951203 26.015023618679496 32.37672768117231 19.792823159196995 37 20.703393954777248 27.58343984306844 31.983199609070134 19.72996659308418 38 20.672415360985557 25.257347173103383 33.61167433303587 20.45856313287518 39 19.723970736221272 25.38016230784528 34.50645603887714 20.389410917056313 40 18.42087117801599 26.110757466590584 33.19596159054093 22.272409764852487 41 20.70419340235897 25.229266576795435 33.154989901977736 20.91155011886786 42 19.57097645526941 27.571847853133484 31.858185993478504 20.9989896981186 43 20.29267775966807 27.410359441625836 30.60844956135311 21.68851323735299 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 306.0 1 281.5 2 257.0 3 398.0 4 539.0 5 539.0 6 1042.5 7 1546.0 8 1868.5 9 2191.0 10 3740.0 11 5289.0 12 5289.0 13 11142.5 14 16996.0 15 28303.5 16 39611.0 17 35054.5 18 30498.0 19 30498.0 20 34186.5 21 37875.0 22 28533.5 23 19192.0 24 19853.5 25 20515.0 26 20515.0 27 21508.5 28 22502.0 29 23500.5 30 24499.0 31 26164.5 32 27830.0 33 27830.0 34 30742.5 35 33655.0 36 36800.5 37 39946.0 38 41834.5 39 43723.0 40 43723.0 41 45815.5 42 47908.0 43 50135.5 44 52363.0 45 58191.0 46 64019.0 47 64019.0 48 94262.0 49 124505.0 50 110791.5 51 97078.0 52 84633.5 53 72189.0 54 72189.0 55 62108.0 56 52027.0 57 43357.0 58 34687.0 59 30389.5 60 26092.0 61 26092.0 62 22959.0 63 19826.0 64 17147.5 65 14469.0 66 12240.0 67 10011.0 68 10011.0 69 8532.5 70 7054.0 71 5823.0 72 4592.0 73 3822.5 74 3053.0 75 3053.0 76 2394.0 77 1735.0 78 1360.5 79 986.0 80 759.5 81 533.0 82 533.0 83 402.5 84 272.0 85 229.0 86 186.0 87 131.0 88 76.0 89 76.0 90 57.5 91 39.0 92 25.5 93 12.0 94 8.5 95 5.0 96 5.0 97 4.5 98 4.0 99 2.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1000691.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.82813368874151 #Duplication Level Percentage of deduplicated Percentage of total 1 85.22325140547612 45.0218531863772 2 8.480855032785737 8.960554869336823 3 2.385580692345035 3.7807732722145206 4 1.041419657329407 2.2006502753392514 5 0.5778024489429917 1.5262112509221304 6 0.3857560837353928 1.2227264377691216 7 0.2974190767964845 1.099846632541073 8 0.21397529603348922 0.9043132435956167 9 0.1656653568547876 0.7876612457566009 >10 1.0686143657914453 10.772383104848224 >50 0.09183506161908746 3.4036528242371107 >100 0.05506060662217505 5.613583782093464 >500 0.006668239527990631 2.546614847830134 >1k 0.004763028234279022 4.319743998657084 >5k 7.620845174846437E-4 2.464485462175664 >10k+ 5.715633881134827E-4 5.3749455663059305 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 20471 2.0456864306764024 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 20372 2.035793266852605 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12560 1.2551327033020183 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7363 0.7357915680264937 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6450 0.6445546127625811 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5428 0.5424251841977193 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5245 0.5241378207658508 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3606 0.3603509974607546 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3259 0.32567495860360496 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3101 0.30988586886461456 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2230 0.22284601340473734 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2013 0.20116099775055438 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 1990 0.19886258595310638 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 1969 0.1967640360510887 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1945 0.19436569330592562 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1755 0.1753788132400511 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1646 0.16448633993910208 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 1629 0.16278751382794487 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 1586 0.15849048307619434 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1520 0.15189504052699584 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 1478 0.14769794072296044 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1432 0.1431011171280645 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 1373 0.13720519121287192 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1363 0.13620588173572062 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 1233 0.12321485853275385 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1166 0.11651948503584024 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1163 0.11621969219269485 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC 1163 0.11621969219269485 No Hit ATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGGA 1121 0.11202259238865943 No Hit TTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCC 1078 0.10772556163690891 No Hit TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1068 0.10672625215975762 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1032 0.10312873804201297 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 9.993094771512884E-5 0.0 0.0 0.0 10 0.0 9.993094771512884E-5 0.0 1.9986189543025768E-4 0.0 11 9.993094771512884E-5 9.993094771512884E-5 0.0 1.9986189543025768E-4 0.0 12 9.993094771512884E-5 9.993094771512884E-5 0.0 3.9972379086051536E-4 0.0 13 9.993094771512884E-5 9.993094771512884E-5 0.0 4.996547385756442E-4 0.0 14 9.993094771512884E-5 9.993094771512884E-5 0.0 5.99585686290773E-4 0.0 15 9.993094771512884E-5 9.993094771512884E-5 0.0 9.993094771512884E-4 0.0 16 9.993094771512884E-5 9.993094771512884E-5 0.0 0.0014989642157269326 0.0 17 9.993094771512884E-5 9.993094771512884E-5 0.0 0.00259820464059335 0.0 18 1.9986189543025768E-4 9.993094771512884E-5 0.0 0.003197790326884123 0.0 19 1.9986189543025768E-4 9.993094771512884E-5 0.0 0.004496892647180798 0.0 20 1.9986189543025768E-4 9.993094771512884E-5 0.0 0.007294959183204406 0.0 21 1.9986189543025768E-4 9.993094771512884E-5 0.0 0.013790470784687781 0.0 22 1.9986189543025768E-4 9.993094771512884E-5 0.0 0.02518259882421247 0.0 23 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.0311784556871202 0.0 24 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.038573345818039735 0.0 25 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.042970307517505406 0.0 26 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.0512645761778611 0.0 27 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.09363529800907573 0.0 28 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.1811748082075286 0.0 29 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.29809401703422933 0.0 30 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.4750717254377225 0.0 31 1.9986189543025768E-4 1.9986189543025768E-4 0.0 0.6485518506711863 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5455 0.0 26.215399 1 CGTTTAC 40 0.0019310135 23.125 28 CCGTTTA 50 2.7017642E-4 22.199999 27 CTAGGAC 45 0.0038254668 20.555557 3 TAAACGT 55 5.142455E-4 20.181818 4 CGCCGTT 50 0.0070342626 18.499998 25 GTATCAA 7940 0.0 18.010704 2 ATACTAC 75 2.0669292E-4 17.266666 6 TCCGACG 65 0.001579741 17.076923 23 TATACCG 65 0.001579741 17.076923 31 TCAGTAC 100 5.8762616E-6 16.65 3 GGGGTAG 90 4.4450306E-5 16.444445 1 GTACCAT 80 3.3820182E-4 16.1875 6 TTTCGTC 80 3.3820182E-4 16.1875 17 GATACCT 360 0.0 15.930556 36 TTGGACC 525 0.0 15.857142 4 GTTAGCC 70 0.00259218 15.857142 3 CCGCCGT 70 0.00259218 15.857142 24 TTTTTAC 775 0.0 15.75484 1 GTATTGG 260 0.0 15.653846 1 >>END_MODULE