##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088712_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3677035 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.54116564025091 31.0 31.0 34.0 30.0 34.0 2 31.749206629798195 31.0 31.0 34.0 30.0 34.0 3 31.822321789158927 31.0 31.0 34.0 30.0 34.0 4 35.546429936076215 37.0 35.0 37.0 33.0 37.0 5 35.424489840319715 37.0 35.0 37.0 33.0 37.0 6 35.479050648144494 37.0 35.0 37.0 33.0 37.0 7 35.35572628490074 37.0 35.0 37.0 33.0 37.0 8 35.38014052082724 37.0 35.0 37.0 33.0 37.0 9 36.97604020630753 39.0 37.0 39.0 33.0 39.0 10 36.776706232059254 39.0 37.0 39.0 32.0 39.0 11 36.873236180781525 39.0 37.0 39.0 33.0 39.0 12 36.738048726759466 39.0 35.0 39.0 32.0 39.0 13 36.774116101696066 39.0 37.0 39.0 32.0 39.0 14 37.770650809687695 40.0 37.0 41.0 32.0 41.0 15 37.77753108142838 40.0 37.0 41.0 32.0 41.0 16 37.65936223071034 39.0 37.0 41.0 32.0 41.0 17 37.68477999257554 39.0 37.0 41.0 32.0 41.0 18 37.64536426767763 39.0 37.0 41.0 32.0 41.0 19 37.69162463778561 40.0 37.0 41.0 32.0 41.0 20 37.56491575413342 39.0 37.0 41.0 32.0 41.0 21 37.49899769787342 39.0 36.0 41.0 32.0 41.0 22 37.35015386037936 39.0 36.0 41.0 31.0 41.0 23 37.1890321957773 39.0 36.0 41.0 31.0 41.0 24 37.03591399048418 39.0 36.0 41.0 31.0 41.0 25 37.21359845636498 39.0 36.0 41.0 31.0 41.0 26 37.10126800533582 39.0 36.0 41.0 31.0 41.0 27 36.97813183720035 39.0 36.0 41.0 31.0 41.0 28 36.82032915106873 39.0 35.0 41.0 30.0 41.0 29 36.71577697791835 39.0 35.0 40.0 30.0 41.0 30 36.53292231376639 39.0 35.0 40.0 30.0 41.0 31 36.399030468842426 39.0 35.0 40.0 30.0 41.0 32 36.218342496060004 38.0 35.0 40.0 30.0 41.0 33 36.09507470013204 38.0 35.0 40.0 30.0 41.0 34 35.92171083495262 38.0 35.0 40.0 29.0 41.0 35 35.78748203375818 38.0 35.0 40.0 28.0 41.0 36 35.59804353235691 38.0 34.0 40.0 27.0 41.0 37 35.560772470210374 38.0 34.0 40.0 27.0 41.0 38 35.37499996600522 38.0 34.0 40.0 26.0 41.0 39 35.293842457305956 38.0 34.0 40.0 25.0 41.0 40 35.14876089022813 38.0 34.0 40.0 25.0 41.0 41 35.030698375185445 38.0 34.0 40.0 24.0 41.0 42 34.8140689441357 38.0 33.0 40.0 23.0 41.0 43 34.45412839420892 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 5.0 14 11.0 15 29.0 16 50.0 17 120.0 18 254.0 19 625.0 20 1385.0 21 2947.0 22 5260.0 23 9137.0 24 14146.0 25 21805.0 26 31962.0 27 44222.0 28 60034.0 29 78354.0 30 99328.0 31 123550.0 32 151976.0 33 187521.0 34 231286.0 35 285172.0 36 368076.0 37 505844.0 38 697604.0 39 756332.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.53358208447839 22.24063681743579 14.145391599481647 23.080389498604173 2 18.791145583330046 23.682586649297598 35.16722032833519 22.35904743903716 3 19.354534291895508 25.548655370427532 32.34905297338753 22.747757364289434 4 13.866416827688614 17.548541147962965 36.94261816925866 31.642423855089767 5 12.501866313483553 38.94787512221124 35.178098658293976 13.37215990601123 6 31.09834418220115 38.55339968208081 14.550174257248027 15.798081878470017 7 25.647811348001852 33.20898495662946 22.628721238715432 18.514482456653255 8 26.210384181820405 35.54007508767254 19.55028983950384 18.699250891003214 9 24.870445889147096 14.626757700157873 21.95176276538026 38.55103364531477 10 16.382982484528974 28.102968832224878 33.872155146741875 21.641893536504277 11 32.873769218949505 23.449056100907388 23.27932695772545 20.397847722417655 12 20.218871998770748 27.9703075983775 31.197636138899952 20.613184263951798 13 30.169117237121757 22.002265412213916 26.452889352426617 21.37572799823771 14 20.29504750430714 23.29284328269924 28.37974074220126 28.032368470792363 15 23.09325312378044 29.940237174788926 25.45216458369311 21.514345117737523 16 21.37904588887514 28.82172728842668 27.17219172512636 22.62703509757182 17 21.198465611559314 28.024019352548997 27.820159449121373 22.95735558677032 18 21.880727270749396 26.695720872931588 29.681251334295162 21.742300522023857 19 22.541069095072526 26.066545463940376 30.787740666052947 20.60464477493415 20 22.72534800457434 25.976880829255094 30.507841236213416 20.78992992995715 21 21.906427325277022 26.448945957816555 30.88542806908283 20.759198647823588 22 21.203442447515457 26.864797316315997 30.483283406331456 21.448476829837084 23 21.52457074789878 27.02294103809183 30.923094286565128 20.529393927444257 24 21.609367329927508 27.107520053521384 29.578641486958922 21.704471129592186 25 21.499523393168683 27.17099510883089 30.33716023916008 20.992321258840345 26 21.25255810727937 27.57354770895572 30.29655687258892 20.87733731117599 27 20.82476778165016 27.55056723691779 30.039229977413868 21.585435004018183 28 20.93999649173859 27.359870112740293 30.342082683466437 21.358050712054684 29 21.316713058211302 27.37654115340213 29.856637209055663 21.4501085793309 30 21.17763360968824 27.5854050886108 30.570636395900504 20.66632490580046 31 21.508715581983854 27.381001268685228 30.45045804568083 20.659825103650086 32 20.938609504668843 27.186904666395616 30.22791461054899 21.646571218386555 33 20.82743297249006 27.233899051817566 30.565224426746006 21.373443548946366 34 20.646934282648928 27.094139707672078 31.01604961606294 21.242876393616054 35 20.485418278585872 28.1394384334117 30.27773736176022 21.097405926242203 36 21.600392707711514 27.031698093708656 30.12002877318274 21.247880425397092 37 20.849515982306396 27.06321805476423 30.37093745368211 21.71632850924726 38 20.743506656858038 26.41666451366386 31.157903038725493 21.681925790752604 39 20.314737281532537 26.29316827280676 31.709053626087325 21.683040819573378 40 19.82931900294667 26.599909981819593 31.58710754724935 21.983663467984396 41 20.31294235708934 25.902554639811697 31.68096033896876 22.103542664130202 42 19.5569256207787 27.130146979835658 31.11749004292861 22.195437356457038 43 19.703674291922706 26.73882625539327 30.926520960502145 22.63097849218188 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1699.0 1 2075.0 2 2451.0 3 3743.0 4 5035.0 5 5035.0 6 7398.0 7 9761.0 8 10344.5 9 10928.0 10 15409.5 11 19891.0 12 19891.0 13 32661.0 14 45431.0 15 64801.5 16 84172.0 17 78965.0 18 73758.0 19 73758.0 20 80906.0 21 88054.0 22 74375.5 23 60697.0 24 67849.0 25 75001.0 26 75001.0 27 83947.0 28 92893.0 29 102138.5 30 111384.0 31 123286.0 32 135188.0 33 135188.0 34 148464.5 35 161741.0 36 175277.5 37 188814.0 38 197017.5 39 205221.0 40 205221.0 41 210161.5 42 215102.0 43 224186.5 44 233271.0 45 237402.5 46 241534.0 47 241534.0 48 273521.5 49 305509.0 50 291087.0 51 276665.0 52 258117.5 53 239570.0 54 239570.0 55 220665.0 56 201760.0 57 179675.0 58 157590.0 59 142018.5 60 126447.0 61 126447.0 62 111226.0 63 96005.0 64 83614.5 65 71224.0 66 60171.5 67 49119.0 68 49119.0 69 41756.0 70 34393.0 71 28519.5 72 22646.0 73 18603.5 74 14561.0 75 14561.0 76 11716.5 77 8872.0 78 6996.0 79 5120.0 80 3960.0 81 2800.0 82 2800.0 83 2119.5 84 1439.0 85 1071.0 86 703.0 87 512.5 88 322.0 89 322.0 90 239.5 91 157.0 92 111.5 93 66.0 94 48.0 95 30.0 96 30.0 97 18.0 98 6.0 99 5.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3677035.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.38369041317913 #Duplication Level Percentage of deduplicated Percentage of total 1 80.09357357890563 44.35877683179294 2 11.563154056018458 12.808202888768458 3 3.824758398368042 6.354877051212676 4 1.5669668629037778 3.4713763049109327 5 0.7907940048664263 2.1898545173060113 6 0.4625123476861033 1.5369384405911886 7 0.2995113310671475 1.1611629984543468 8 0.20839391234447568 0.9233299140222105 9 0.16048749584797492 0.7999550806707553 >10 0.8745169963797934 9.283934876731227 >50 0.09299186518933703 3.554530402152457 >100 0.055166043347884615 5.900518850444188 >500 0.004618301821899431 1.770640950562354 >1k 0.002358281772091879 2.6578933626129273 >5k 0.0 0.0 >10k+ 1.965234810076566E-4 3.2280075297672393 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38321 1.0421712058764738 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 36510 0.992919566988076 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27881 0.7582467939521924 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15919 0.43293033653473517 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4935 0.13421139586650657 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4833 0.13143742172701647 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4485 0.12197327466287376 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4330 0.11775792180384467 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4245 0.11544627668760292 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4178 0.11362415641950649 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4167 0.11332500234563991 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3827 0.10407842188067287 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 1.0878329958784728E-4 0.0 0.0 0.0 3 0.0 1.0878329958784728E-4 0.0 0.0 0.0 4 0.0 2.9915407386658E-4 0.0 0.0 0.0 5 0.0 3.263498987635418E-4 0.0 0.0 0.0 6 0.0 3.535457236605036E-4 0.0 0.0 2.719582489696182E-5 7 0.0 3.535457236605036E-4 0.0 0.0 2.719582489696182E-5 8 0.0 3.535457236605036E-4 0.0 0.0 2.719582489696182E-5 9 0.0 3.8074154855746544E-4 0.0 3.263498987635418E-4 2.719582489696182E-5 10 0.0 3.8074154855746544E-4 0.0 5.167206730422745E-4 2.719582489696182E-5 11 0.0 4.6232902324835093E-4 0.0 7.342872722179691E-4 2.719582489696182E-5 12 0.0 5.9830814773316E-4 0.0 0.001033441346084549 2.719582489696182E-5 13 2.719582489696182E-5 6.255039726301219E-4 0.0 0.001033441346084549 2.719582489696182E-5 14 2.719582489696182E-5 7.342872722179691E-4 0.0 0.001060637170981511 2.719582489696182E-5 15 2.719582489696182E-5 7.886789220118927E-4 0.0 0.0015229661942298617 2.719582489696182E-5 16 2.719582489696182E-5 0.0010062455211875872 0.0 0.001958099392581251 2.719582489696182E-5 17 2.719582489696182E-5 0.001060637170981511 0.0 0.0027467783145931437 2.719582489696182E-5 18 2.719582489696182E-5 0.0010878329958784727 0.0 0.00329069481253238 2.719582489696182E-5 19 2.719582489696182E-5 0.0010878329958784727 0.0 0.004024982084750349 2.719582489696182E-5 20 2.719582489696182E-5 0.0010878329958784727 0.0 0.006445410500579951 2.719582489696182E-5 21 2.719582489696182E-5 0.0010878329958784727 0.0 0.01003525938697891 2.719582489696182E-5 22 8.158747469088545E-5 0.0012238121203632817 0.0 0.015963949214516587 2.719582489696182E-5 23 8.158747469088545E-5 0.0013053995950541672 0.0 0.019689777225400357 2.719582489696182E-5 24 1.631749493817709E-4 0.0013053995950541672 0.0 0.02678788752350739 2.719582489696182E-5 25 1.631749493817709E-4 0.001332595419951129 0.0 0.03146556940578482 2.719582489696182E-5 26 1.631749493817709E-4 0.001332595419951129 0.0 0.03973310017446122 2.719582489696182E-5 27 1.631749493817709E-4 0.0014141828946420145 0.0 0.08724420626945352 2.719582489696182E-5 28 1.631749493817709E-4 0.0015773578440237855 0.0 0.19028918680404183 2.719582489696182E-5 29 1.631749493817709E-4 0.0015773578440237855 0.0 0.32425582024647576 2.719582489696182E-5 30 1.631749493817709E-4 0.0016317494938177092 0.0 0.524226720713836 2.719582489696182E-5 31 1.631749493817709E-4 0.001658945318714671 0.0 0.841928347160144 2.719582489696182E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9490 0.0 27.155426 1 GTATCAA 15265 0.0 16.869965 2 GTATTGG 875 0.0 16.491428 1 CTAATAC 950 0.0 15.384211 3 CGTATAC 200 6.184564E-11 14.8 3 GGACCCT 1115 0.0 14.434978 6 TTATGCG 395 0.0 14.050632 4 TTAACGG 545 0.0 13.917431 35 TAACGGC 565 0.0 13.424779 36 TGGACCC 1215 0.0 13.246914 5 TGCGCTA 270 3.6379788E-12 13.018518 10 AATACTG 925 0.0 13.0 5 AACGGCC 585 0.0 12.965812 37 TAATACT 1105 0.0 12.891403 4 TAGTACT 640 0.0 12.71875 4 GTATTAG 975 0.0 12.71282 1 TTGGACC 1310 0.0 12.709924 4 GACCCTC 1170 0.0 12.649572 7 ATTGGAC 1125 0.0 12.497778 3 ATCAACG 23295 0.0 12.2698 2 >>END_MODULE