##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088709_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3993207 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.61276262412642 31.0 31.0 34.0 30.0 34.0 2 31.819791961698954 31.0 31.0 34.0 30.0 34.0 3 31.8958073047553 31.0 31.0 34.0 30.0 34.0 4 35.60115616345459 37.0 35.0 37.0 33.0 37.0 5 35.485527296731675 37.0 35.0 37.0 33.0 37.0 6 35.539269314112694 37.0 35.0 37.0 33.0 37.0 7 35.40177681748028 37.0 35.0 37.0 33.0 37.0 8 35.43035735437707 37.0 35.0 37.0 33.0 37.0 9 37.04207896059483 39.0 37.0 39.0 33.0 39.0 10 36.856657568716074 39.0 37.0 39.0 32.0 39.0 11 36.953123892650694 39.0 37.0 39.0 33.0 39.0 12 36.80641399256287 39.0 37.0 39.0 32.0 39.0 13 36.8456473706472 39.0 37.0 39.0 32.0 39.0 14 37.84682061310621 40.0 37.0 41.0 32.0 41.0 15 37.8614096389193 40.0 37.0 41.0 33.0 41.0 16 37.74815204921758 40.0 37.0 41.0 32.0 41.0 17 37.77324992167949 40.0 37.0 41.0 32.0 41.0 18 37.732421584956654 39.0 37.0 41.0 32.0 41.0 19 37.77768996197793 40.0 37.0 41.0 32.0 41.0 20 37.6526516156062 39.0 37.0 41.0 32.0 41.0 21 37.58754429710255 39.0 37.0 41.0 32.0 41.0 22 37.45195653518588 39.0 36.0 41.0 32.0 41.0 23 37.27829536510379 39.0 36.0 41.0 31.0 41.0 24 37.12134632639881 39.0 36.0 41.0 31.0 41.0 25 37.29573197682965 39.0 36.0 41.0 31.0 41.0 26 37.185218296972835 39.0 36.0 41.0 31.0 41.0 27 37.07569780379529 39.0 36.0 41.0 31.0 41.0 28 36.91494004693471 39.0 35.0 41.0 30.0 41.0 29 36.79018493156002 39.0 35.0 41.0 30.0 41.0 30 36.59423941709007 39.0 35.0 40.0 30.0 41.0 31 36.43881346496688 39.0 35.0 40.0 30.0 41.0 32 36.26300940572327 38.0 35.0 40.0 30.0 41.0 33 36.12857510266811 38.0 35.0 40.0 30.0 41.0 34 35.94279935901144 38.0 35.0 40.0 29.0 41.0 35 35.80562640504236 38.0 35.0 40.0 28.0 41.0 36 35.605742702544596 38.0 35.0 40.0 27.0 41.0 37 35.53875093377328 38.0 35.0 40.0 26.0 41.0 38 35.35073789062275 38.0 34.0 40.0 25.0 41.0 39 35.25415186340202 38.0 34.0 40.0 25.0 41.0 40 35.0816711981122 38.0 34.0 40.0 24.0 41.0 41 34.937589260962426 38.0 34.0 40.0 24.0 41.0 42 34.6880324511101 38.0 33.0 40.0 23.0 41.0 43 34.332095982001434 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 4.0 13 11.0 14 6.0 15 25.0 16 56.0 17 123.0 18 301.0 19 662.0 20 1465.0 21 3054.0 22 5342.0 23 9571.0 24 15137.0 25 23535.0 26 33932.0 27 47142.0 28 63724.0 29 83470.0 30 106285.0 31 132117.0 32 162728.0 33 200839.0 34 248206.0 35 307421.0 36 397336.0 37 550122.0 38 743322.0 39 857269.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.48870819869844 21.24382732976277 13.76768096419745 23.49978350734134 2 19.03710476316404 23.412059530096986 34.61270602801207 22.9381296787269 3 20.035825841234878 24.326512499852875 32.342951417244336 23.29471024166791 4 13.98735402397121 16.462557538339485 36.095449096428005 33.4546393412613 5 12.902060924965822 38.43662499840354 34.80295411682891 13.858359959801733 6 32.4483804621198 37.22108570880498 13.780978546817133 16.549555282258094 7 26.193983933214582 32.915949511257494 21.566450224093067 19.32361633143486 8 26.833144387456 34.53973210003889 19.155956603301558 19.471166909203554 9 24.864576266644832 14.387408416343053 21.607995778831402 39.14001953818072 10 16.3208669122337 27.84664055732648 33.61794166944013 22.214550860999694 11 33.29496817971119 22.521221664692064 23.264083229344234 20.91972692625251 12 20.866937276229354 27.330864640876367 30.892463125502882 20.90973495739139 13 31.25843463662164 21.131436461971543 25.989060922712 21.621067978694818 14 20.528612716545876 23.037698771939446 27.831589997713618 28.60209851380106 15 23.026905442167163 29.45632420257703 25.273746139381203 22.24302421587461 16 21.86167659227283 28.234699578559287 26.685894320028993 23.217729509138895 17 21.61673562126882 27.017883120008555 27.2416130693951 24.123768189327524 18 22.630106578496935 26.057226685218172 29.29717893412488 22.01548780216002 19 22.81439454553696 25.15992784746696 30.573020632288785 21.452656974707295 20 23.471159897295582 25.01933909261403 30.118924463470087 21.3905765466203 21 22.42899003232239 25.859741305672358 30.64063545916853 21.070633202836717 22 21.361001320492527 26.10165213073101 30.302386027070472 22.234960521705986 23 22.19942517380141 26.215119827246617 30.82600025493294 20.759454744019028 24 22.163038379928715 26.280055103579652 29.011744194578444 22.54516232191319 25 22.032917401977908 26.391243930004126 29.994638394653723 21.58120027336424 26 21.73448559015348 27.156017707071033 29.783354581918744 21.326142120856744 27 20.882088005956113 27.041999074928995 29.72520583080216 22.350707088312728 28 21.369866375572315 26.825055650758898 29.75109980524426 22.053978168424525 29 21.60050806281768 26.70602851292207 29.401556192804428 22.29190723145582 30 21.678265113729392 26.954300140213117 30.512743266251913 20.854691479805577 31 22.290003999291798 26.75791663192016 30.2168908348603 20.735188533927744 32 21.71392567427634 26.661377684652958 29.594609044810348 22.03008759626035 33 21.456538566620765 26.52254190679321 30.07988316157915 21.941036365006873 34 20.85166133386023 26.794328468321325 30.64649541083144 21.707514786987 35 20.5599659621953 28.225108290153756 29.813480743672944 21.401445003978008 36 22.30638181291378 26.632653904493303 29.476358225356208 21.5846060572367 37 21.42718872324926 26.968799764199552 29.72212559979986 21.88188591275133 38 21.307084756688045 25.995847447928444 30.726381076663444 21.970686718720067 39 20.850659632721268 25.812961862482965 31.264294588284553 22.072083916511215 40 19.969137587908666 26.137212521164066 31.226931135801372 22.666718755125892 41 21.000363867938727 25.3869383680836 31.24280809885388 22.369889665123797 42 19.991901246291516 26.90143536260454 30.648173260239204 22.458490130864742 43 20.231407988616667 26.625391571235852 30.200588148823744 22.94261229132374 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1673.0 1 1454.5 2 1236.0 3 2293.5 4 3351.0 5 3351.0 6 5282.0 7 7213.0 8 7658.5 9 8104.0 10 12363.0 11 16622.0 12 16622.0 13 31787.5 14 46953.0 15 70705.5 16 94458.0 17 87025.5 18 79593.0 19 79593.0 20 85691.0 21 91789.0 22 75599.5 23 59410.0 24 66494.0 25 73578.0 26 73578.0 27 81836.5 28 90095.0 29 97647.5 30 105200.0 31 115940.0 32 126680.0 33 126680.0 34 140364.5 35 154049.0 36 167686.5 37 181324.0 38 191073.5 39 200823.0 40 200823.0 41 206997.5 42 213172.0 43 223843.0 44 234514.0 45 247322.5 46 260131.0 47 260131.0 48 322967.0 49 385803.0 50 365751.0 51 345699.0 52 317039.5 53 288380.0 54 288380.0 55 261837.5 56 235295.0 57 207432.0 58 179569.0 59 161853.0 60 144137.0 61 144137.0 62 127085.5 63 110034.0 64 96304.0 65 82574.0 66 70459.0 67 58344.0 68 58344.0 69 50009.5 70 41675.0 71 34910.0 72 28145.0 73 23358.0 74 18571.0 75 18571.0 76 14972.0 77 11373.0 78 8865.0 79 6357.0 80 5002.5 81 3648.0 82 3648.0 83 2711.5 84 1775.0 85 1360.5 86 946.0 87 705.0 88 464.0 89 464.0 90 368.0 91 272.0 92 190.5 93 109.0 94 76.5 95 44.0 96 44.0 97 29.0 98 14.0 99 12.5 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3993207.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.427665194091404 #Duplication Level Percentage of deduplicated Percentage of total 1 75.85898204829056 34.46096438454334 2 12.69844654048902 11.537215558528068 3 4.50869887969296 6.144589895030003 4 2.114371475736374 3.842038379827559 5 1.1593837809616026 2.633404911649174 6 0.7416532259629709 2.0214944663498198 7 0.48653413063947365 1.5471476714531835 8 0.3507880505569294 1.2748385691830557 9 0.2683396230851726 1.097103830023971 >10 1.573109322247242 13.587184982065567 >50 0.145384758956712 4.59335872941632 >100 0.08375427735294226 7.163284301552599 >500 0.006022898325999263 1.808863356163955 >1k 0.003978428226195164 3.6839444158990973 >5k 3.315356855162637E-4 1.2022608150877145 >10k+ 2.2102379034417578E-4 3.402305733226554 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 44525 1.1150185803040014 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 40627 1.0174028043124235 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32318 0.809324435222116 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18072 0.4525685745817835 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9498 0.23785393544587097 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8563 0.21443917132269877 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8184 0.20494805303105998 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7820 0.19583257266653095 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7160 0.1793045038737035 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6671 0.16705870744992685 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4985 0.12483700444279498 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4941 0.12373513318993982 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4633 0.11602203441995369 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4518 0.11314214364544588 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4418 0.11063789079804778 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4189 0.10490315177750616 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4148 0.10387640811007294 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 2.5042528473980938E-5 0.0 5 0.0 0.0 0.0 2.5042528473980938E-5 0.0 6 2.5042528473980938E-5 0.0 0.0 2.5042528473980938E-5 0.0 7 2.5042528473980938E-5 0.0 0.0 5.0085056947961875E-5 0.0 8 5.0085056947961875E-5 0.0 0.0 7.512758542194282E-5 0.0 9 7.512758542194282E-5 0.0 0.0 1.5025517084388563E-4 0.0 10 1.7529769931786657E-4 0.0 0.0 2.504252847398094E-4 0.0 11 2.003402277918475E-4 0.0 0.0 4.00680455583695E-4 0.0 12 2.003402277918475E-4 0.0 0.0 5.258930979535997E-4 0.0 13 2.003402277918475E-4 0.0 0.0 5.759781549015616E-4 0.0 14 2.003402277918475E-4 0.0 0.0 7.512758542194282E-4 0.0 15 2.003402277918475E-4 0.0 0.0 9.265735535372948E-4 0.0 16 2.003402277918475E-4 0.0 0.0 0.0015275942369128372 0.0 17 2.003402277918475E-4 0.0 0.0 0.002328955148080227 0.0 18 2.2538275626582844E-4 0.0 0.0 0.0028798907745078077 0.0 19 2.2538275626582844E-4 0.0 0.0 0.0038315068565190837 0.0 20 2.2538275626582844E-4 0.0 0.0 0.00641088728933912 0.0 21 2.2538275626582844E-4 0.0 0.0 0.010192309088910242 0.0 22 2.2538275626582844E-4 0.0 0.0 0.015651580296238088 0.0 23 2.504252847398094E-4 0.0 0.0 0.019082406697173475 0.0 24 2.754678132137903E-4 0.0 0.0 0.02564354915735648 0.0 25 2.754678132137903E-4 0.0 0.0 0.030601969795204707 0.0 26 2.754678132137903E-4 0.0 0.0 0.04054385359937514 0.0 27 2.754678132137903E-4 0.0 0.0 0.09816671161800528 5.0085056947961875E-5 28 2.754678132137903E-4 0.0 0.0 0.21068279205160162 7.512758542194282E-5 29 2.754678132137903E-4 0.0 0.0 0.36201479161986844 1.0017011389592375E-4 30 2.754678132137903E-4 0.0 0.0 0.5654352504140157 1.0017011389592375E-4 31 2.754678132137903E-4 0.0 0.0 0.8221462098007942 1.0017011389592375E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12870 0.0 23.272339 1 GTATTGG 1155 0.0 20.181818 1 TTGGACC 1775 0.0 16.676058 4 TGGACCC 1760 0.0 16.292614 5 ATTGGAC 1445 0.0 16.259516 3 GGACCCT 1775 0.0 15.7380295 6 TGCGACG 215 0.0 15.488372 22 GTATCAA 19925 0.0 15.05069 2 GACCCTC 1755 0.0 14.757834 7 CAATGCG 245 0.0 14.346938 19 GTCGTAC 80 0.0063022217 13.875 1 ATGCGAC 320 0.0 13.875 21 TATTGGA 1605 0.0 13.485982 2 CCCTCGC 2075 0.0 12.838554 9 TATACTG 585 0.0 12.649572 5 TCTATAC 395 0.0 12.64557 3 TACACAG 830 0.0 12.481928 5 ACCCTCG 2145 0.0 12.333334 8 GTATTAG 785 0.0 12.254777 1 CCTCGCA 2165 0.0 12.133948 10 >>END_MODULE