##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088701_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2568361 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.563390816166418 31.0 31.0 34.0 30.0 34.0 2 31.77392002136771 31.0 31.0 34.0 30.0 34.0 3 31.849127128156827 31.0 31.0 34.0 30.0 34.0 4 35.56259614594677 37.0 35.0 37.0 33.0 37.0 5 35.44126234590854 37.0 35.0 37.0 33.0 37.0 6 35.494283708559664 37.0 35.0 37.0 33.0 37.0 7 35.347111251105275 37.0 35.0 37.0 33.0 37.0 8 35.385996361103444 37.0 35.0 37.0 33.0 37.0 9 36.97525581489518 39.0 37.0 39.0 33.0 39.0 10 36.79457560677802 39.0 37.0 39.0 32.0 39.0 11 36.88461785551174 39.0 37.0 39.0 33.0 39.0 12 36.73253331599413 39.0 35.0 39.0 32.0 39.0 13 36.7704318045633 39.0 37.0 39.0 32.0 39.0 14 37.748058392102976 40.0 37.0 41.0 32.0 41.0 15 37.76426911948904 40.0 37.0 41.0 32.0 41.0 16 37.65770894356362 39.0 36.0 41.0 32.0 41.0 17 37.6898450023186 39.0 37.0 41.0 32.0 41.0 18 37.6556539364988 39.0 37.0 41.0 32.0 41.0 19 37.70483588560954 40.0 37.0 41.0 32.0 41.0 20 37.586228337838804 39.0 37.0 41.0 32.0 41.0 21 37.52499551270246 39.0 36.0 41.0 32.0 41.0 22 37.39859427860803 39.0 36.0 41.0 32.0 41.0 23 37.208625656595785 39.0 36.0 41.0 31.0 41.0 24 37.05176375127951 39.0 36.0 41.0 31.0 41.0 25 37.2269821103809 39.0 36.0 41.0 31.0 41.0 26 37.1009383026763 39.0 36.0 41.0 31.0 41.0 27 36.98625543683306 39.0 36.0 41.0 31.0 41.0 28 36.812020584333744 39.0 35.0 41.0 30.0 41.0 29 36.698472683551884 39.0 35.0 41.0 30.0 41.0 30 36.489753192794936 39.0 35.0 40.0 30.0 41.0 31 36.334544481869955 38.0 35.0 40.0 30.0 41.0 32 36.158149107543686 38.0 35.0 40.0 30.0 41.0 33 36.01596348799877 38.0 35.0 40.0 29.0 41.0 34 35.82986581714954 38.0 35.0 40.0 28.0 41.0 35 35.698441924635986 38.0 35.0 40.0 27.0 41.0 36 35.49883641746624 38.0 34.0 40.0 27.0 41.0 37 35.4203906693802 38.0 34.0 40.0 26.0 41.0 38 35.232929483043854 38.0 34.0 40.0 25.0 41.0 39 35.131946404730485 38.0 34.0 40.0 25.0 41.0 40 34.963555356898816 38.0 34.0 40.0 24.0 41.0 41 34.82864714111451 38.0 33.0 40.0 23.0 41.0 42 34.564000932890664 38.0 33.0 40.0 23.0 41.0 43 34.20616377526368 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 2.0 13 1.0 14 5.0 15 11.0 16 30.0 17 70.0 18 176.0 19 414.0 20 966.0 21 1899.0 22 3706.0 23 6383.0 24 10248.0 25 15613.0 26 23346.0 27 32108.0 28 43138.0 29 56600.0 30 71305.0 31 87985.0 32 107754.0 33 132602.0 34 163125.0 35 198458.0 36 254884.0 37 351941.0 38 468781.0 39 536808.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.07604032299198 21.436900809504582 14.147660706575127 23.33939816092831 2 18.92619456532785 23.52667712988945 34.884192681636264 22.662935623146435 3 19.7095346020283 24.45388323526171 32.81232661607928 23.024255546630712 4 13.815736962210531 16.57570723118752 36.0842186904411 33.52433711616085 5 12.615010117347211 38.64507364813591 34.981024863716584 13.758891370800288 6 32.38536171511715 37.33844268776858 13.695582513517376 16.580613083596894 7 25.7987876314895 33.31474819933803 21.565582096909274 19.320882072263206 8 26.845213737476936 34.69960025089931 19.13395352133131 19.32123249029245 9 24.525290642553756 14.567656182289015 21.92573396029608 38.98131921486115 10 16.273919437337664 28.055713351822426 33.61081249871027 22.059554712129643 11 32.92695224697774 22.684934088315465 23.506781172895867 20.881332491810927 12 20.76433180538094 27.537873375277073 31.057666737658764 20.64012808168322 13 31.246464184746614 21.324805975483976 26.297821840465573 21.130907999303837 14 20.258328171156627 23.305680159447988 28.054856774417615 28.381134894977773 15 22.4846896522724 29.916004798390883 25.62073633729838 21.978569212038337 16 21.539339680052766 28.64110613733817 26.889249603151583 22.930304579457484 17 21.385895518581695 27.342534791643384 27.32174332190841 23.94982636786651 18 22.66281881713669 26.0667016825127 29.70641588156805 21.564063618782562 19 22.449569978675115 25.34624221439276 30.890867755739944 21.313320051192182 20 23.279827095957305 25.02370188614451 30.67571108578584 21.020759932112348 21 22.140812759577024 25.86271945415773 31.205192727969315 20.791275058295934 22 21.04030547107669 26.10653253183645 30.717722313958202 22.13543968312866 23 21.96864070120984 26.341117934745157 31.365450573342297 20.32479079070271 24 21.886798623713723 26.376276543679023 29.358684390551016 22.37824044205624 25 21.764385925498793 26.63274360574701 30.355117524366708 21.24775294438749 26 21.464194480448814 27.277045555511865 30.217987268923647 21.040772695115677 27 20.597104534759715 27.248389147787243 30.043595896371265 22.110910421081773 28 21.086327038917037 26.879360027659665 30.11270611880495 21.92160681461835 29 21.24016055375393 26.714040588530974 29.687571178662193 22.358227679052906 30 21.430515414305077 27.033816507881873 30.966207632026805 20.56946044578624 31 22.01438972169411 26.821385311488534 30.727183600747715 20.437041366069643 32 21.525634441575775 26.771119791960707 29.88777667936867 21.815469087094844 33 21.190868417640665 26.65949218197909 30.465031979538704 21.68460742084154 34 20.479130464915173 26.936205619069902 31.132344713223723 21.452319202791195 35 20.196654598010173 28.58671347213262 30.077158156505256 21.139473773351956 36 22.040787879896946 26.61794817784572 29.98020916841519 21.36105477384215 37 21.147182969995264 27.180641662133944 30.054030566575335 21.618144801295454 38 21.026016202550966 25.98365260958253 31.1953031524774 21.795028035389105 39 20.590797010233373 25.714998787164266 31.909494031407576 21.78471017119478 40 19.64696551614045 26.10816781597291 31.674752887152547 22.570113780734093 41 20.791898023681252 25.316145199214596 31.68709538884915 22.204861388255 42 19.692013700566235 27.037164946827957 30.993618108980787 22.27720324362502 43 19.96588485808654 26.8799440577084 30.403630953748323 22.750540130456738 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 910.0 1 870.0 2 830.0 3 1420.0 4 2010.0 5 2010.0 6 3229.0 7 4448.0 8 4840.5 9 5233.0 10 8108.5 11 10984.0 12 10984.0 13 20610.5 14 30237.0 15 46913.5 16 63590.0 17 58851.0 18 54112.0 19 54112.0 20 58400.5 21 62689.0 22 51519.5 23 40350.0 24 45164.5 25 49979.0 26 49979.0 27 55584.0 28 61189.0 29 65807.5 30 70426.0 31 76599.0 32 82772.0 33 82772.0 34 92041.5 35 101311.0 36 109766.0 37 118221.0 38 124351.5 39 130482.0 40 130482.0 41 134758.0 42 139034.0 43 145863.5 44 152693.0 45 161012.5 46 169332.0 47 169332.0 48 215032.5 49 260733.0 50 241803.5 51 222874.0 52 202235.5 53 181597.0 54 181597.0 55 163298.5 56 145000.0 57 125391.5 58 105783.0 59 95507.5 60 85232.0 61 85232.0 62 75187.5 63 65143.0 64 56892.5 65 48642.0 66 41817.5 67 34993.0 68 34993.0 69 29810.5 70 24628.0 71 20893.5 72 17159.0 73 14118.0 74 11077.0 75 11077.0 76 8935.0 77 6793.0 78 5232.0 79 3671.0 80 2861.5 81 2052.0 82 2052.0 83 1568.0 84 1084.0 85 819.5 86 555.0 87 412.5 88 270.0 89 270.0 90 209.5 91 149.0 92 106.5 93 64.0 94 41.5 95 19.0 96 19.0 97 13.5 98 8.0 99 5.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2568361.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.18672985634532 #Duplication Level Percentage of deduplicated Percentage of total 1 79.02975122225325 40.452745264276544 2 11.897814553096934 12.180204388205334 3 3.943456184534565 6.055578792543151 4 1.660802897959175 3.400442771298869 5 0.8856529492760947 2.2666839130535483 6 0.5196819339247244 1.5960491257816782 7 0.34289078330413186 1.228602052665347 8 0.24779454658547345 1.0147034012756966 9 0.1841524598719268 0.8483545994261212 >10 1.103420194782241 10.722971708986465 >50 0.10787236191278059 3.8340008536149552 >100 0.06788134254448165 6.5314467387196835 >500 0.004262068253809484 1.5258437607701383 >1k 0.0038815264454327226 3.5854815626985963 >5k 3.805418083757571E-4 1.1943164443006091 >10k+ 3.0443344670060565E-4 3.5625746223832113 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30543 1.1892019852349418 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 27459 1.0691254072149514 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 21756 0.8470771826857673 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11690 0.45515408464775786 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6790 0.26437093539420664 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6710 0.2612561084676181 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6168 0.24015315603998036 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5690 0.22154206515361355 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5299 0.2063183485499118 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4770 0.18572155549784472 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3730 0.14522880545219305 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3484 0.13565071265293313 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3363 0.13093953692646787 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3124 0.12163399148328448 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2955 0.11505391960086608 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2952 0.114937113591119 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2770 0.10785088233312995 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2728 0.10621559819667095 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.893533658235739E-5 0.0 0.0 0.0 0.0 7 3.893533658235739E-5 0.0 0.0 0.0 0.0 8 3.893533658235739E-5 0.0 0.0 0.0 0.0 9 7.787067316471478E-5 0.0 0.0 3.893533658235739E-5 0.0 10 7.787067316471478E-5 0.0 0.0 7.787067316471478E-5 0.0 11 7.787067316471478E-5 0.0 0.0 1.9467668291178693E-4 0.0 12 7.787067316471478E-5 0.0 0.0 4.2828870240593125E-4 0.0 13 7.787067316471478E-5 0.0 0.0 5.450947121530034E-4 0.0 14 7.787067316471478E-5 0.0 0.0 7.787067316471477E-4 0.0 15 7.787067316471478E-5 0.0 0.0 9.733834145589347E-4 0.0 16 1.1680600974707216E-4 0.0 0.0 0.0014406074535472232 0.0 17 1.1680600974707216E-4 0.0 0.0 0.0025307968778532303 0.0 18 1.1680600974707216E-4 0.0 0.0 0.003153762263170948 0.0 19 1.5574134632942956E-4 0.0 0.0 0.004127145677729883 0.0 20 1.9467668291178693E-4 0.0 0.0 0.006463265872671326 0.0 21 1.9467668291178693E-4 0.0 0.0 0.010551476213818852 0.0 22 1.9467668291178693E-4 0.0 0.0 0.016742194730413676 0.0 23 1.9467668291178693E-4 0.0 0.0 0.020246375022825842 0.0 24 1.9467668291178693E-4 0.0 0.0 0.02709899426132074 0.0 25 1.9467668291178693E-4 0.0 0.0 0.032744618065762565 0.0 26 1.9467668291178693E-4 0.0 0.0 0.04306248226008727 0.0 27 1.9467668291178693E-4 0.0 0.0 0.10356799530907065 0.0 28 1.9467668291178693E-4 0.0 0.0 0.2237613793388079 0.0 29 1.9467668291178693E-4 0.0 0.0 0.37420751989303686 0.0 30 1.9467668291178693E-4 0.0 0.0 0.592868370139556 0.0 31 1.9467668291178693E-4 0.0 0.0 0.8631964120308633 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8640 0.0 23.274885 1 GTATTGG 835 0.0 20.826347 1 ATTGGAC 915 0.0 19.005463 3 TTGGACC 1260 0.0 17.765873 4 TGCGACG 105 4.802969E-7 17.619047 22 GGACCCT 1250 0.0 16.28 6 TACCCCG 250 0.0 16.279999 5 CGAATTA 115 1.2435794E-6 16.086956 15 TGGACCC 1325 0.0 16.056604 5 TATACTG 375 0.0 15.786668 5 GTATACT 235 0.0 15.744681 4 GACCCTC 1320 0.0 15.696969 7 TAATACT 665 0.0 15.578947 4 TCTATAC 230 0.0 15.282609 3 CTAATAC 480 0.0 15.031249 3 GTATTAG 485 0.0 14.876288 1 GTATCAA 13540 0.0 14.838256 2 TGTACCG 75 0.004106242 14.799999 5 TATTGGA 1175 0.0 14.32766 2 CCCTCGC 1350 0.0 13.977778 9 >>END_MODULE