##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088700_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3821387 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.5586319836227 31.0 31.0 34.0 30.0 34.0 2 31.76739492754856 31.0 31.0 34.0 30.0 34.0 3 31.84826948958585 31.0 31.0 34.0 30.0 34.0 4 35.5651851016398 37.0 35.0 37.0 33.0 37.0 5 35.43562743056383 37.0 35.0 37.0 33.0 37.0 6 35.47938457947337 37.0 35.0 37.0 33.0 37.0 7 35.34827851772145 37.0 35.0 37.0 33.0 37.0 8 35.373182564341164 37.0 35.0 37.0 33.0 37.0 9 36.97264239397894 39.0 37.0 39.0 33.0 39.0 10 36.78992208849824 39.0 37.0 39.0 32.0 39.0 11 36.87075818282734 39.0 37.0 39.0 33.0 39.0 12 36.738011878932966 39.0 35.0 39.0 32.0 39.0 13 36.78108210448196 39.0 37.0 39.0 32.0 39.0 14 37.784874706487464 40.0 37.0 41.0 32.0 41.0 15 37.79346478124304 40.0 37.0 41.0 32.0 41.0 16 37.684568456426945 39.0 37.0 41.0 32.0 41.0 17 37.69549851925492 39.0 37.0 41.0 32.0 41.0 18 37.65691697805012 39.0 37.0 41.0 32.0 41.0 19 37.704389008493514 40.0 37.0 41.0 32.0 41.0 20 37.57834027278577 39.0 37.0 41.0 32.0 41.0 21 37.52061280367573 39.0 36.0 41.0 32.0 41.0 22 37.39135607045295 39.0 36.0 41.0 31.0 41.0 23 37.227197873442286 39.0 36.0 41.0 31.0 41.0 24 37.07474799071646 39.0 36.0 41.0 31.0 41.0 25 37.25642417268913 39.0 36.0 41.0 31.0 41.0 26 37.151470395434956 39.0 36.0 41.0 31.0 41.0 27 37.04098171684784 39.0 36.0 41.0 31.0 41.0 28 36.882939100384235 39.0 36.0 41.0 30.0 41.0 29 36.780733278257344 39.0 35.0 41.0 30.0 41.0 30 36.60186340718697 39.0 35.0 40.0 30.0 41.0 31 36.48135742336487 39.0 35.0 40.0 30.0 41.0 32 36.314189062767 38.0 35.0 40.0 30.0 41.0 33 36.19322957868439 38.0 35.0 40.0 30.0 41.0 34 36.01899362718301 38.0 35.0 40.0 29.0 41.0 35 35.886948901014215 38.0 35.0 40.0 28.0 41.0 36 35.696336696597335 38.0 35.0 40.0 27.0 41.0 37 35.65332849041461 38.0 35.0 40.0 27.0 41.0 38 35.480418235577815 38.0 34.0 40.0 26.0 41.0 39 35.40600781862711 38.0 34.0 40.0 26.0 41.0 40 35.25988705148157 38.0 34.0 40.0 25.0 41.0 41 35.14504340963111 38.0 34.0 40.0 24.0 41.0 42 34.92065341720166 38.0 34.0 40.0 24.0 41.0 43 34.579138412309455 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 4.0 13 4.0 14 9.0 15 18.0 16 52.0 17 105.0 18 279.0 19 617.0 20 1407.0 21 2739.0 22 4970.0 23 8695.0 24 14308.0 25 22030.0 26 32514.0 27 45324.0 28 61666.0 29 81110.0 30 102572.0 31 127917.0 32 157678.0 33 193610.0 34 237605.0 35 292194.0 36 375641.0 37 513469.0 38 712804.0 39 832044.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.977399043855016 21.578002960705106 13.720881972959035 23.723716022480843 2 18.764966751600923 23.3389866035552 34.997397541782604 22.89864910306127 3 19.53233210873434 24.716627758455243 32.400173026181335 23.350867106629085 4 13.726717550460082 16.68896659773009 36.6451238777962 32.939191974013625 5 12.650537618932603 38.51617226938805 35.324608577984904 13.50868153369444 6 32.10135482221508 37.7591434732991 14.153185741198158 15.986315963287675 7 26.01772602460834 32.88779702239004 22.09752636935228 18.996950583649337 8 26.5177538940704 34.87775511875662 19.45204712320422 19.152443863968763 9 24.629303444011295 14.490995023534648 21.86724349038713 39.012458042066925 10 16.052260605900422 27.891862300259042 34.21563950471386 21.84023758912667 11 33.110464865243955 22.72017987186328 23.509291259953518 20.660064002939247 12 20.537202853309545 27.205697826469816 31.412259475420832 20.844839844799807 13 30.65269233396146 21.398356146603316 26.273758716403233 21.675192803031987 14 20.318774308909305 22.94439165674662 28.03518722390588 28.7016468104382 15 22.76631495318323 29.7259345886716 25.407790417458376 22.0999600406868 16 21.737186000789766 28.608800940600887 26.698944650201618 22.955068408407733 17 21.36734646346994 27.435274155692685 27.484026087909964 23.713353292927412 18 22.387578122812478 26.465992583321185 29.392286099261867 21.754143194604474 19 22.467575254743892 25.655344512345913 30.440596568732765 21.43648366417743 20 23.202360818205538 25.37303863754181 30.16216363325672 21.26243691099593 21 22.137276334482742 26.18559700967214 30.61799289106285 21.059133764782263 22 21.268193982970057 26.38110194021176 30.240512149122818 22.110191927695364 23 22.007532866993056 26.486194672248587 30.808394962352676 20.697877498405685 24 21.99047099914246 26.640667380718046 28.929705366140617 22.439156253998878 25 21.910683215282827 26.710877490293445 29.92541713257516 21.453022161848565 26 21.62795864433516 27.2776873946554 29.846937774164196 21.247416186845246 27 20.90165167778087 27.30456245337099 29.53783534617143 22.255950522676716 28 21.21575229098754 26.958588596234822 29.807789684740122 22.017869428037518 29 21.5997751601709 26.89159721326314 29.38181869567254 22.126808930893414 30 21.60377894204382 27.038140863513693 30.42863756013196 20.929442634310526 31 22.04893144818884 26.964685858825604 30.19293779980934 20.793444893176222 32 21.58522546918174 26.788990489578783 29.648240285529837 21.977543755709643 33 21.266519198395766 26.691198771545515 30.21777171482501 21.82451031523371 34 20.84248467899221 26.953328725931186 30.63798563191846 21.566200963158142 35 20.588545467915186 28.3705104978899 29.74433105047984 21.296612983715075 36 22.16417756170731 26.82727501820674 29.529409086282023 21.47913833380393 37 21.39351497244325 27.084302113342616 29.67836023935812 21.843822674856014 38 21.251995675915577 26.140430163184202 30.630213584753392 21.97736057614683 39 20.75181079539968 26.00393522037941 31.32019866085272 21.92405532336819 40 20.039844171762766 26.39151700678314 31.072147364294693 22.496491457159404 41 21.01210895415722 25.510737331759387 31.18896358835156 22.288190125731834 42 20.00692418747434 27.003336746579187 30.593211313065126 22.396527752881347 43 20.30443396599193 26.687456674762334 30.190477959965843 22.817631399279893 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1448.0 1 1251.5 2 1055.0 3 1946.5 4 2838.0 5 2838.0 6 4500.0 7 6162.0 8 6644.0 9 7126.0 10 10760.0 11 14394.0 12 14394.0 13 26736.0 14 39078.0 15 59211.0 16 79344.0 17 74345.0 18 69346.0 19 69346.0 20 75896.0 21 82446.0 22 69962.0 23 57478.0 24 65341.5 25 73205.0 26 73205.0 27 82205.5 28 91206.0 29 99458.5 30 107711.0 31 121264.5 32 134818.0 33 134818.0 34 150174.0 35 165530.0 36 178883.5 37 192237.0 38 201275.0 39 210313.0 40 210313.0 41 215909.0 42 221505.0 43 230321.0 44 239137.0 45 247380.5 46 255624.0 47 255624.0 48 308383.5 49 361143.0 50 338731.0 51 316319.0 52 289384.5 53 262450.0 54 262450.0 55 239335.0 56 216220.0 57 188083.5 58 159947.0 59 144838.0 60 129729.0 61 129729.0 62 115008.5 63 100288.0 64 87151.0 65 74014.0 66 63166.5 67 52319.0 68 52319.0 69 44373.5 70 36428.0 71 30456.5 72 24485.0 73 19976.0 74 15467.0 75 15467.0 76 12272.5 77 9078.0 78 7147.0 79 5216.0 80 4110.5 81 3005.0 82 3005.0 83 2326.0 84 1647.0 85 1241.0 86 835.0 87 618.0 88 401.0 89 401.0 90 311.5 91 222.0 92 164.0 93 106.0 94 74.5 95 43.0 96 43.0 97 29.0 98 15.0 99 12.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3821387.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.459719317459886 #Duplication Level Percentage of deduplicated Percentage of total 1 77.56614774823886 39.13966043912757 2 12.731500917540744 12.84855925578178 3 4.2698971743729714 6.463734387998256 4 1.815627615876831 3.664642395286951 5 0.9875426689198454 2.4915562943855307 6 0.5741365992887316 1.7382462989994198 7 0.3616981688089692 1.2775831653017866 8 0.25627040380148064 1.0345066116155857 9 0.18969649001469868 0.8614828477484124 >10 1.0595094022285783 10.126995585254074 >50 0.10866667085263622 3.8218905072217924 >100 0.06923486592844512 6.947290780417223 >500 0.005970085189464877 2.0534167573768687 >1k 0.0035820510974756943 3.4022256044904204 >5k 3.1148270412832127E-4 1.1384061990479117 >10k+ 2.076551360855475E-4 2.9898028699464856 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 37455 0.9801415035954223 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34688 0.9077332392662664 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27042 0.7076488196563184 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14949 0.3911930406420496 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8783 0.2298380143126043 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7823 0.20471624569822425 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7346 0.19223386691795413 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6819 0.1784430626890184 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6424 0.16810650164455995 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6263 0.16389337169985663 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4283 0.11207972393269773 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4273 0.11181803884296462 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4125 0.10794509951491435 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3895 0.10192634245105246 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3884 0.10163848885234603 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.616850897331257E-5 2 0.0 0.0 0.0 0.0 2.616850897331257E-5 3 0.0 0.0 0.0 0.0 2.616850897331257E-5 4 0.0 0.0 0.0 2.616850897331257E-5 2.616850897331257E-5 5 0.0 0.0 0.0 2.616850897331257E-5 2.616850897331257E-5 6 5.233701794662514E-5 0.0 0.0 2.616850897331257E-5 2.616850897331257E-5 7 5.233701794662514E-5 0.0 0.0 2.616850897331257E-5 2.616850897331257E-5 8 5.233701794662514E-5 0.0 0.0 2.616850897331257E-5 2.616850897331257E-5 9 5.233701794662514E-5 0.0 0.0 2.0934807178650056E-4 2.616850897331257E-5 10 5.233701794662514E-5 0.0 0.0 2.878535987064383E-4 2.616850897331257E-5 11 5.233701794662514E-5 0.0 0.0 4.186961435730011E-4 2.616850897331257E-5 12 5.233701794662514E-5 0.0 0.0 6.542127243328143E-4 2.616850897331257E-5 13 5.233701794662514E-5 0.0 0.0 7.588867602260646E-4 2.616850897331257E-5 14 5.233701794662514E-5 0.0 0.0 8.112237781726896E-4 2.616850897331257E-5 15 5.233701794662514E-5 2.616850897331257E-5 0.0 0.0010729088679058154 2.616850897331257E-5 16 5.233701794662514E-5 2.616850897331257E-5 0.0 0.0015177735204521291 2.616850897331257E-5 17 5.233701794662514E-5 2.616850897331257E-5 0.0 0.002119649226838318 2.616850897331257E-5 18 5.233701794662514E-5 2.616850897331257E-5 0.0 0.0026430194063045693 2.616850897331257E-5 19 5.233701794662514E-5 5.233701794662514E-5 0.0 0.0036112542383171346 2.616850897331257E-5 20 5.233701794662514E-5 5.233701794662514E-5 0.0 0.005940251536941953 2.616850897331257E-5 21 5.233701794662514E-5 5.233701794662514E-5 0.0 0.009603842793205713 5.233701794662514E-5 22 5.233701794662514E-5 5.233701794662514E-5 0.0 0.01496838713273479 5.233701794662514E-5 23 5.233701794662514E-5 5.233701794662514E-5 0.0 0.018474967335158674 5.233701794662514E-5 24 5.233701794662514E-5 5.233701794662514E-5 0.0 0.024389050363127315 5.233701794662514E-5 25 5.233701794662514E-5 5.233701794662514E-5 0.0 0.028785359870643828 5.233701794662514E-5 26 5.233701794662514E-5 5.233701794662514E-5 0.0 0.03778732695746335 5.233701794662514E-5 27 5.233701794662514E-5 5.233701794662514E-5 0.0 0.08975798577846211 5.233701794662514E-5 28 5.233701794662514E-5 5.233701794662514E-5 0.0 0.19178900226540782 5.233701794662514E-5 29 5.233701794662514E-5 7.85055269199377E-5 0.0 0.3240969836344762 5.233701794662514E-5 30 5.233701794662514E-5 7.85055269199377E-5 0.0 0.5031680905388541 5.233701794662514E-5 31 5.233701794662514E-5 7.85055269199377E-5 0.0 0.7332939584501649 5.233701794662514E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11055 0.0 22.3071 1 GTATTGG 1145 0.0 20.034933 1 GGACCCT 1600 0.0 16.996876 6 TTGGACC 1745 0.0 15.796562 4 ATTGGAC 1445 0.0 15.747404 3 TGGACCC 1720 0.0 15.59593 5 GACCCTC 1700 0.0 15.12647 7 GTATTAG 825 0.0 14.575758 1 GTATCAA 17225 0.0 14.31669 2 TACACCG 325 0.0 14.23077 5 TTAACGG 520 0.0 14.230769 35 CTAATAC 915 0.0 13.950819 3 ACGTTTA 205 1.4279067E-9 13.536585 26 TAGGGGT 490 0.0 13.214285 4 TAACGGC 565 0.0 13.097345 36 CCCTCGC 1920 0.0 12.911458 9 TCTAATA 935 0.0 12.860962 2 GTACTAT 475 0.0 12.852632 1 TAATACT 1055 0.0 12.800948 4 ATTAGAG 840 0.0 12.77381 3 >>END_MODULE