##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088699_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1875923 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.350574090727605 31.0 31.0 34.0 30.0 34.0 2 31.576610553844695 31.0 31.0 34.0 30.0 34.0 3 31.648154535127507 31.0 31.0 34.0 30.0 34.0 4 35.40398086701853 37.0 35.0 37.0 33.0 37.0 5 35.255649618880945 37.0 35.0 37.0 33.0 37.0 6 35.30890873452695 37.0 35.0 37.0 32.0 37.0 7 35.167658267423555 37.0 35.0 37.0 32.0 37.0 8 35.199401041513966 37.0 35.0 37.0 32.0 37.0 9 36.76758587639258 39.0 37.0 39.0 32.0 39.0 10 36.54752727057561 38.0 35.0 39.0 32.0 39.0 11 36.650539494424876 39.0 35.0 39.0 32.0 39.0 12 36.48527791385894 38.0 35.0 39.0 32.0 39.0 13 36.53569362921613 38.0 35.0 39.0 32.0 39.0 14 37.4851009343134 39.0 36.0 41.0 32.0 41.0 15 37.49883923807107 39.0 36.0 41.0 32.0 41.0 16 37.37558098066925 39.0 36.0 41.0 32.0 41.0 17 37.38341605705565 39.0 36.0 41.0 32.0 41.0 18 37.34237226154805 39.0 36.0 41.0 32.0 41.0 19 37.38357811061542 39.0 36.0 41.0 32.0 41.0 20 37.25748284977582 39.0 36.0 40.0 31.0 41.0 21 37.187624971813875 39.0 36.0 40.0 31.0 41.0 22 37.05229319113844 39.0 36.0 40.0 31.0 41.0 23 36.867199773125016 39.0 36.0 40.0 30.0 41.0 24 36.707664973455735 39.0 35.0 40.0 30.0 41.0 25 36.89855233930177 39.0 36.0 40.0 30.0 41.0 26 36.76738117715919 39.0 36.0 40.0 30.0 41.0 27 36.64427111347321 39.0 35.0 40.0 30.0 41.0 28 36.472526857445644 39.0 35.0 40.0 30.0 41.0 29 36.36564400564416 39.0 35.0 40.0 30.0 41.0 30 36.17895937093367 38.0 35.0 40.0 29.0 41.0 31 36.03922229217297 38.0 35.0 40.0 29.0 41.0 32 35.87272185478828 38.0 35.0 40.0 29.0 41.0 33 35.74592080805022 38.0 34.0 40.0 28.0 41.0 34 35.562655290222466 38.0 34.0 40.0 27.0 41.0 35 35.430445172856246 38.0 34.0 40.0 27.0 41.0 36 35.24512146820525 38.0 34.0 40.0 26.0 41.0 37 35.198637683956115 38.0 34.0 40.0 25.0 41.0 38 35.01244827213057 38.0 33.0 40.0 25.0 41.0 39 34.92898215971551 38.0 33.0 40.0 24.0 41.0 40 34.77847971371959 38.0 33.0 40.0 24.0 41.0 41 34.662280381444226 38.0 33.0 40.0 23.0 41.0 42 34.41421902711359 38.0 33.0 40.0 23.0 41.0 43 34.07153918364453 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 1.0 14 4.0 15 5.0 16 31.0 17 71.0 18 197.0 19 412.0 20 895.0 21 1796.0 22 3265.0 23 5551.0 24 8909.0 25 13365.0 26 18983.0 27 26169.0 28 34997.0 29 45307.0 30 56663.0 31 69762.0 32 84069.0 33 103248.0 34 124609.0 35 152247.0 36 193093.0 37 260379.0 38 354154.0 39 317738.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.330013545332086 22.166741385440663 14.0657159169113 23.437529152315953 2 19.47121496991081 23.73594225349335 34.186051346457184 22.606791430138657 3 20.159835984739246 24.81386496140833 32.11954861686754 22.906750436984886 4 14.512216119744787 17.091213232099612 36.039432322115566 32.35713832604004 5 12.865186897330009 38.69956282853827 35.021959856561274 13.413290417570444 6 32.57169937145608 37.74787131454756 13.924238894666786 15.756190419329577 7 26.11333194379513 32.95369799293468 21.87312592254586 19.059844140724326 8 26.620442310265403 35.074307420933586 19.282774399588895 19.022475869212116 9 24.845156224429253 14.4268181583146 21.55920045758808 39.16882515966807 10 16.121503921003153 28.121943171441472 34.07618542978577 21.68036747776961 11 33.52381734218302 22.751840027549104 23.15015061918853 20.574192011079344 12 20.50745153185925 27.318125530738733 31.253948056503383 20.920474880898627 13 31.054632839407585 21.308550510868514 26.047977448967792 21.58883920075611 14 20.43777916257757 22.975996349530337 27.746661243558506 28.83956324433359 15 22.934789967392053 30.00656210302875 24.89585126894867 22.162796660630526 16 21.966519947780373 28.512790770196855 26.546185531069238 22.97450375095353 17 21.579030695822805 27.474581845843353 27.357093015011806 23.589294443322036 18 22.602420248592292 26.37299078906757 29.09479760096763 21.92979136137251 19 22.59106583799015 25.670136780667434 30.265261420644663 21.47353596069775 20 23.36114008943864 25.46122628700645 29.89882847003848 21.278805153516426 21 22.40326495277258 26.12767155155089 30.236582205133157 21.232481290543376 22 21.522631792456302 26.400977012382704 29.934277686237653 22.14211350892334 23 22.256243992957067 26.598852937993723 30.31425063821916 20.83065243083005 24 22.12905327137628 26.625133334363937 28.80613969763151 22.439673696628272 25 22.07686562828005 26.73382649501072 29.627655292887823 21.561652583821402 26 21.835277887205393 27.295256788258364 29.506168430154116 21.363296894382124 27 21.13743474545597 27.23032875016725 29.39379708015734 22.23843942421944 28 21.499176671963617 26.93863234258549 29.539591976856194 22.022599008594703 29 21.72354622231296 26.794489965739533 29.12848768312985 22.353476128817654 30 21.81944568087283 27.10105905199734 30.082471402077804 20.997023865052032 31 22.30528651762359 26.91251186749136 29.86620452971684 20.915997085168208 32 21.857453637489385 26.893268007268954 29.283291478381575 21.965986876860082 33 21.628819519777732 26.76266563179832 29.719503412453495 21.889011435970453 34 21.154546321997223 26.92450596319785 30.246497324250516 21.67445039055441 35 20.850589283248834 28.284689723405492 29.48777748340417 21.37694350994151 36 22.35272982952925 26.821676582674236 29.29139415636996 21.534199431426558 37 21.709579764201408 27.04428699898663 29.479781419599842 21.766351817212115 38 21.49219344290784 26.178046753518135 30.388454110323295 21.941305693250733 39 21.06360442299604 26.005918153357037 31.023501497662753 21.906975925984167 40 20.36261616281692 26.292337158827948 30.8157637600264 22.52928291832874 41 21.268410270570808 25.66587221330513 30.77658304738521 22.289134468738855 42 20.335536160066273 26.97743990558248 30.291062053186618 22.395961881164634 43 20.572432877042395 26.667405858342804 29.894617209768203 22.865544054846602 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 777.0 1 655.5 2 534.0 3 813.0 4 1092.0 5 1092.0 6 1874.0 7 2656.0 8 2947.5 9 3239.0 10 5039.5 11 6840.0 12 6840.0 13 12959.5 14 19079.0 15 29081.5 16 39084.0 17 36408.5 18 33733.0 19 33733.0 20 37294.5 21 40856.0 22 34752.5 23 28649.0 24 32663.0 25 36677.0 26 36677.0 27 41348.0 28 46019.0 29 50317.5 30 54616.0 31 59811.5 32 65007.0 33 65007.0 34 72122.0 35 79237.0 36 84993.0 37 90749.0 38 95432.5 39 100116.0 40 100116.0 41 102814.0 42 105512.0 43 110533.0 44 115554.0 45 120020.5 46 124487.0 47 124487.0 48 148750.5 49 173014.0 50 163110.0 51 153206.0 52 140452.5 53 127699.0 54 127699.0 55 117018.0 56 106337.0 57 94173.5 58 82010.0 59 74355.0 60 66700.0 61 66700.0 62 59377.0 63 52054.0 64 45625.0 65 39196.0 66 33492.0 67 27788.0 68 27788.0 69 23682.5 70 19577.0 71 16521.0 72 13465.0 73 11093.0 74 8721.0 75 8721.0 76 7052.5 77 5384.0 78 4175.5 79 2967.0 80 2314.5 81 1662.0 82 1662.0 83 1245.0 84 828.0 85 621.0 86 414.0 87 311.5 88 209.0 89 209.0 90 161.5 91 114.0 92 78.0 93 42.0 94 25.5 95 9.0 96 9.0 97 9.0 98 9.0 99 7.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1875923.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.68321778631653 #Duplication Level Percentage of deduplicated Percentage of total 1 82.7305654003378 48.54895786973126 2 10.42636365419213 12.237051380765838 3 2.9565662797589134 5.20502468684316 4 1.2121050653279655 2.8452090211415375 5 0.6166784911101133 1.8094339098975927 6 0.3847080222713956 1.354554279305725 7 0.2604729838984047 1.0699774989093263 8 0.194529316885961 0.9132485014913786 9 0.15475219600932683 0.8173221139193465 >10 0.9354338399864669 10.543387455808158 >50 0.07903211452290443 3.1968983319685957 >100 0.04278537783554997 4.6191978729215855 >500 0.0035497432826546065 1.4818344271591257 >1k 0.0020934383461809216 2.402299145582988 >5k 9.101905852960529E-5 0.3886857631271657 >10k+ 2.730571755888159E-4 2.5669177414271447 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 18548 0.9887399429507501 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 17052 0.9089925332756195 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12458 0.6640997524951717 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7277 0.3879157086938004 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3912 0.20853734401678534 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3695 0.1969697050465291 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3280 0.1748472618545644 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3268 0.17420757675021842 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3005 0.16018781154663597 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2930 0.15618977964447367 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2002 0.10672079824171887 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1939 0.10336245144390256 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1878 0.10011071883014389 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 5.330709202883061E-5 0.0 0.0 0.0 0.0 9 5.330709202883061E-5 5.330709202883061E-5 0.0 5.330709202883061E-5 0.0 10 5.330709202883061E-5 5.330709202883061E-5 0.0 5.330709202883061E-5 0.0 11 5.330709202883061E-5 1.0661418405766122E-4 0.0 2.1322836811532244E-4 0.0 12 5.330709202883061E-5 1.0661418405766122E-4 0.0 4.7976382825947546E-4 0.0 13 1.5992127608649182E-4 1.0661418405766122E-4 0.0 5.33070920288306E-4 0.0 14 1.5992127608649182E-4 1.0661418405766122E-4 0.0 6.396851043459673E-4 0.0 15 1.5992127608649182E-4 1.0661418405766122E-4 0.0 0.0010128347485477815 0.0 16 1.5992127608649182E-4 1.0661418405766122E-4 0.0 0.0012793702086919346 0.0 17 1.5992127608649182E-4 1.0661418405766122E-4 0.0 0.0017591340369514101 0.0 18 1.5992127608649182E-4 1.5992127608649182E-4 0.0 0.0019190553130379018 0.0 19 1.5992127608649182E-4 1.5992127608649182E-4 0.0 0.0026653546014415302 0.0 20 1.5992127608649182E-4 1.5992127608649182E-4 0.0 0.004531102822450602 0.0 21 1.5992127608649182E-4 1.5992127608649182E-4 0.0 0.00788944962026693 0.0 22 1.5992127608649182E-4 2.1322836811532244E-4 0.0 0.01322015882314999 0.0 23 1.5992127608649182E-4 2.1322836811532244E-4 0.0 0.016258663068793335 0.0 24 1.5992127608649182E-4 2.1322836811532244E-4 0.0 0.022495592836166516 0.0 25 1.5992127608649182E-4 2.1322836811532244E-4 0.0 0.02617378218615583 0.0 26 1.5992127608649182E-4 2.1322836811532244E-4 0.0 0.034489688542653406 0.0 27 1.5992127608649182E-4 2.66535460144153E-4 0.0 0.08241276427657213 0.0 28 1.5992127608649182E-4 3.7314964420181426E-4 0.0 0.17612663206325632 0.0 29 1.5992127608649182E-4 4.264567362306449E-4 0.0 0.29649404586435585 0.0 30 1.5992127608649182E-4 4.264567362306449E-4 0.0 0.466063905608066 0.0 31 1.5992127608649182E-4 4.264567362306449E-4 0.0 0.6832369985335219 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5310 0.0 23.377588 1 GTATTGG 645 0.0 17.496122 1 GTATACT 165 5.4569682E-11 16.818182 4 TACCCCG 180 1.0913936E-11 16.444445 5 TATACCG 125 1.6592458E-7 16.279999 5 GTATCAA 7740 0.0 16.085918 2 CTAATAC 345 0.0 15.550724 3 ATTGGAC 665 0.0 15.300752 3 TTGGACC 900 0.0 14.8 4 GTTACGC 100 1.0939488E-4 14.8 3 GCGCTTA 75 0.0041056913 14.8 18 TGGACCC 885 0.0 14.632768 5 GACCCTC 945 0.0 13.899471 7 ACGCGGG 80 0.006300579 13.875 20 GGACCCT 895 0.0 13.849162 6 GTATTAG 355 0.0 13.549295 1 TAGTACA 205 1.4242687E-9 13.536585 4 CGTTACG 110 2.457658E-4 13.454545 2 CGCTTAT 110 2.457658E-4 13.454545 1 TAGACTA 125 4.8475733E-5 13.32 5 >>END_MODULE