##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088698_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3803515 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.574915045688 31.0 31.0 34.0 30.0 34.0 2 31.779692468677 31.0 31.0 34.0 30.0 34.0 3 31.856192495625756 31.0 31.0 34.0 30.0 34.0 4 35.57105940163244 37.0 35.0 37.0 33.0 37.0 5 35.44876541830386 37.0 35.0 37.0 33.0 37.0 6 35.49629881832989 37.0 35.0 37.0 33.0 37.0 7 35.35727294357982 37.0 35.0 37.0 33.0 37.0 8 35.38912321891724 37.0 35.0 37.0 33.0 37.0 9 36.98629609716276 39.0 37.0 39.0 33.0 39.0 10 36.79738136960154 39.0 37.0 39.0 32.0 39.0 11 36.891339721284126 39.0 37.0 39.0 33.0 39.0 12 36.745660001340866 39.0 37.0 39.0 32.0 39.0 13 36.787255472898096 39.0 37.0 39.0 32.0 39.0 14 37.78945081063174 40.0 37.0 41.0 32.0 41.0 15 37.797515719012544 40.0 37.0 41.0 32.0 41.0 16 37.690651147688385 39.0 37.0 41.0 32.0 41.0 17 37.71146137191519 39.0 37.0 41.0 32.0 41.0 18 37.67611275359766 39.0 37.0 41.0 32.0 41.0 19 37.72063262534787 40.0 37.0 41.0 32.0 41.0 20 37.601565131201006 39.0 37.0 41.0 32.0 41.0 21 37.54149911332018 39.0 36.0 41.0 32.0 41.0 22 37.4117388783796 39.0 36.0 41.0 32.0 41.0 23 37.23661902214136 39.0 36.0 41.0 31.0 41.0 24 37.08863169988813 39.0 36.0 41.0 31.0 41.0 25 37.26149495926794 39.0 36.0 41.0 31.0 41.0 26 37.1371633870249 39.0 36.0 41.0 31.0 41.0 27 37.03157921028312 39.0 36.0 41.0 31.0 41.0 28 36.872098309064114 39.0 35.0 41.0 30.0 41.0 29 36.761089676259985 39.0 35.0 41.0 30.0 41.0 30 36.55985134802939 39.0 35.0 40.0 30.0 41.0 31 36.421621841901505 39.0 35.0 40.0 30.0 41.0 32 36.246035312073175 38.0 35.0 40.0 30.0 41.0 33 36.116978636866165 38.0 35.0 40.0 30.0 41.0 34 35.941065041152726 38.0 35.0 40.0 29.0 41.0 35 35.8092446066336 38.0 35.0 40.0 28.0 41.0 36 35.62007958427928 38.0 35.0 40.0 27.0 41.0 37 35.55484597799667 38.0 34.0 40.0 26.0 41.0 38 35.37277833793215 38.0 34.0 40.0 26.0 41.0 39 35.28450972324284 38.0 34.0 40.0 25.0 41.0 40 35.12514056077076 38.0 34.0 40.0 24.0 41.0 41 35.00063520191192 38.0 34.0 40.0 24.0 41.0 42 34.74489754871481 38.0 33.0 40.0 23.0 41.0 43 34.39577943034272 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 2.0 10 0.0 11 2.0 12 1.0 13 5.0 14 10.0 15 20.0 16 48.0 17 126.0 18 271.0 19 603.0 20 1411.0 21 2849.0 22 5020.0 23 8951.0 24 14839.0 25 22673.0 26 32774.0 27 45799.0 28 62108.0 29 81468.0 30 103101.0 31 127985.0 32 157035.0 33 193077.0 34 237392.0 35 293149.0 36 376283.0 37 519160.0 38 704090.0 39 813262.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.19499988826125 21.427679396558183 13.864491135173648 23.512829580006915 2 18.902778088163185 23.331839101462727 34.85184099444856 22.91354181592553 3 19.654240879817745 24.62966492836232 32.431658610522106 23.284435581297828 4 13.764820172918999 16.565256085489345 36.37374901899953 33.296174722592134 5 12.785778418121133 38.564538328362055 34.953773023111516 13.695910230405294 6 32.33409096585658 37.43976295610771 13.910369750086431 16.315776327949276 7 26.07701034437882 32.978074228706866 21.84287428865142 19.102041138262894 8 26.76001014850737 34.70855248368943 19.160197869602197 19.371239498201007 9 24.667682393785746 14.474900191007528 21.778276147195424 39.079141268011305 10 16.29603143408137 27.913443222913543 33.82855069586948 21.96197464713561 11 33.10942641214771 22.809375012324125 23.341488070902834 20.73971050462533 12 20.786903693031313 27.358193670854458 31.055668243716667 20.79923439239756 13 30.90031194828994 21.274610459009626 26.217643416681675 21.60743417601876 14 20.46146787905398 23.07213196214554 27.896406350441634 28.569993808358845 15 22.855148461357455 29.66692651402716 25.424350896473392 22.053574128141996 16 21.827493778780944 28.409773591007266 26.823951003216763 22.93878162699503 17 21.53368660305007 27.305505565246886 27.365502699476668 23.795305132226375 18 22.489591864367565 26.169819232998947 29.49153611856401 21.84905278406947 19 22.607193609069505 25.385255480785535 30.63852778285349 21.369023127291467 20 23.253280189508914 25.177473994449873 30.32521233648349 21.244033479557725 21 22.142465587752383 26.00857364832267 30.76590995434486 21.083050809580087 22 21.235856832430002 26.270410396698846 30.3355185926702 22.158214178200954 23 21.993655868321802 26.42697609973932 30.945506984986253 20.63386104695262 24 21.98781916201198 26.52896071134201 29.036693689915776 22.446526436730235 25 21.95087964685298 26.597397407398155 30.04016022021735 21.411562725531518 26 21.592553204075703 27.264596038138407 29.994044982075792 21.148805775710102 27 20.87831913374865 27.228103477967093 29.678783966935846 22.21479342134841 28 21.18240627419637 26.930352581756612 29.922321852286636 21.964919291760385 29 21.56539411570613 26.803548822602252 29.442528818737408 22.188528242954213 30 21.512706010098555 27.07464016837057 30.659534667274873 20.753119154255998 31 22.12424559913659 26.813933953198553 30.31661502583794 20.745205421826913 32 21.57919713738476 26.739949757001092 29.715434275926345 21.965418829687803 33 21.285442544593618 26.706980253791556 30.19759354176334 21.80998365985148 34 20.79684186863993 26.85547447558377 30.773034942678024 21.57464871309828 35 20.502824361150147 28.41466380440198 29.812239467965817 21.270272366482057 36 22.246474642534604 26.704482564154475 29.615552981912785 21.43348981139814 37 21.394815059228108 27.059732904957652 29.749034774412614 21.796417261401622 38 21.16137309830512 26.15656833218746 30.81302426834126 21.869034301166156 39 20.697092031975686 25.95315122984923 31.467392661787848 21.882364076387237 40 19.984225118081564 26.38306934506634 31.16919481058968 22.463510726262417 41 20.954958768402385 25.44793434494145 31.244230665581707 22.352876221074453 42 19.886762639295494 27.093412277853513 30.65469703681989 22.365128046031106 43 20.27624447386168 26.745470965672542 30.155080234993157 22.82320432547262 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1273.0 1 1199.0 2 1125.0 3 2128.0 4 3131.0 5 3131.0 6 4786.5 7 6442.0 8 7060.5 9 7679.0 10 11822.5 11 15966.0 12 15966.0 13 29721.0 14 43476.0 15 65105.5 16 86735.0 17 80485.5 18 74236.0 19 74236.0 20 80401.5 21 86567.0 22 71283.5 23 56000.0 24 63019.0 25 70038.0 26 70038.0 27 78288.5 28 86539.0 29 94176.5 30 101814.0 31 113168.5 32 124523.0 33 124523.0 34 139035.0 35 153547.0 36 167816.0 37 182085.0 38 192085.5 39 202086.0 40 202086.0 41 207573.5 42 213061.0 43 224822.5 44 236584.0 45 246225.0 46 255866.0 47 255866.0 48 311883.0 49 367900.0 50 346556.0 51 325212.0 52 296753.0 53 268294.0 54 268294.0 55 242841.5 56 217389.0 57 189135.5 58 160882.0 59 144909.5 60 128937.0 61 128937.0 62 114150.5 63 99364.0 64 86629.5 65 73895.0 66 63079.0 67 52263.0 68 52263.0 69 44509.5 70 36756.0 71 31066.0 72 25376.0 73 20905.5 74 16435.0 75 16435.0 76 13242.0 77 10049.0 78 7799.0 79 5549.0 80 4384.0 81 3219.0 82 3219.0 83 2447.5 84 1676.0 85 1226.0 86 776.0 87 588.0 88 400.0 89 400.0 90 309.5 91 219.0 92 150.0 93 81.0 94 65.0 95 49.0 96 49.0 97 31.0 98 13.0 99 10.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3803515.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.04140577791984 #Duplication Level Percentage of deduplicated Percentage of total 1 76.31067917250955 35.13450944970169 2 12.894152070950849 11.87329775321707 3 4.416974461927238 6.100911405369034 4 2.0242701020354104 3.728009646876941 5 1.0913878976156433 2.512451652761633 6 0.649960097790555 1.7955045961098843 7 0.45456384406345623 1.465013087754767 8 0.3054087634456733 1.124915904474798 9 0.23211631878943592 0.9618265458955275 >10 1.3730371502512275 12.127320261868903 >50 0.1440196062143923 4.603755622864804 >100 0.09095399089118769 8.026748863641139 >500 0.0076690557446532906 2.3572193701224426 >1k 0.004235150179057976 3.726881946778491 >5k 3.433905550587548E-4 1.1667915707694758 >10k+ 2.2892703670583656E-4 3.2948423217934795 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 41156 1.0820517337252515 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37616 0.9889799304064792 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 29659 0.7797787046981542 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16609 0.4366750229721718 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8941 0.23507203205456007 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7906 0.20786036074525802 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7527 0.19789589366677926 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7285 0.19153335795967677 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6665 0.1752326466439596 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5956 0.1565919945103411 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4587 0.12059897226644302 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4534 0.11920552436364784 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4359 0.11460451713743736 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4243 0.1115547066332064 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3986 0.10479779887814299 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3916 0.1029573959876588 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3831 0.10072262104921369 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.6291469864059955E-5 0.0 3 0.0 0.0 0.0 2.6291469864059955E-5 0.0 4 0.0 0.0 0.0 7.887440959217987E-5 0.0 5 0.0 0.0 0.0 7.887440959217987E-5 0.0 6 0.0 0.0 0.0 7.887440959217987E-5 0.0 7 0.0 0.0 0.0 7.887440959217987E-5 0.0 8 0.0 0.0 0.0 7.887440959217987E-5 0.0 9 0.0 0.0 0.0 2.892061685046595E-4 0.0 10 0.0 0.0 0.0 3.6808057809683935E-4 0.0 11 0.0 0.0 0.0 6.572867466014989E-4 0.0 12 0.0 0.0 0.0 8.150355657858586E-4 0.0 13 0.0 0.0 0.0 8.676185055139786E-4 0.0 14 0.0 0.0 0.0 8.676185055139786E-4 0.0 15 0.0 0.0 0.0 9.727843849702183E-4 0.0 16 0.0 0.0 0.0 0.0012882820233389377 0.0 17 0.0 0.0 0.0 0.0019192773000763768 0.0 18 0.0 0.0 0.0 0.002261066408309156 0.0 19 0.0 0.0 0.0 0.0030761019740950146 0.0 20 0.0 0.0 0.0 0.004995379274171392 0.0 21 0.0 0.0 0.0 0.008413270356499185 0.0 22 0.0 0.0 0.0 0.013066860522437797 0.0 23 0.0 0.0 0.0 0.01635329425544529 0.0 24 5.258293972811991E-5 0.0 0.0 0.02221629203513066 0.0 25 5.258293972811991E-5 0.0 0.0 0.02729054571889423 0.0 26 5.258293972811991E-5 0.0 0.0 0.03641368576172304 0.0 27 5.258293972811991E-5 0.0 0.0 0.09128398336801616 0.0 28 5.258293972811991E-5 0.0 0.0 0.1992630500997104 0.0 29 5.258293972811991E-5 0.0 0.0 0.34236752056978875 0.0 30 5.258293972811991E-5 0.0 0.0 0.5335590894212328 0.0 31 5.258293972811991E-5 0.0 0.0 0.7816453990585025 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12420 0.0 22.417473 1 GTATTGG 1265 0.0 18.280632 1 ATTGGAC 1450 0.0 15.9482765 3 TAGTACT 465 0.0 15.118279 4 GTATCAA 18625 0.0 14.978792 2 GCGCTAA 75 0.0041067232 14.8 11 GTATTAG 845 0.0 14.23077 1 CCGTTTA 210 1.364242E-10 14.095238 27 TTGGACC 1870 0.0 14.048128 4 TTTAGCG 80 0.00630215 13.875 26 CGCGATA 165 2.5997178E-7 13.454545 14 ATTAGAG 800 0.0 13.4125 3 GACCCTC 1855 0.0 13.16442 7 GGACCCT 1940 0.0 13.159794 6 TAGGACG 170 3.7378413E-7 13.058824 4 TGGACCC 1915 0.0 13.041775 5 TATACTG 490 0.0 12.836734 5 TACCCCG 525 0.0 12.685715 5 TGCGACG 235 8.112693E-10 12.595744 22 CTAATAC 960 0.0 12.526042 3 >>END_MODULE