##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088697_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2731713 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.583146911846157 31.0 31.0 34.0 30.0 34.0 2 31.782979031838263 31.0 31.0 34.0 30.0 34.0 3 31.861710582334236 31.0 31.0 34.0 30.0 34.0 4 35.57597631962069 37.0 35.0 37.0 33.0 37.0 5 35.45089619590345 37.0 35.0 37.0 33.0 37.0 6 35.49764305401043 37.0 35.0 37.0 33.0 37.0 7 35.36095336515952 37.0 35.0 37.0 33.0 37.0 8 35.39015189370186 37.0 35.0 37.0 33.0 37.0 9 36.993331290659015 39.0 37.0 39.0 33.0 39.0 10 36.8119235073377 39.0 37.0 39.0 32.0 39.0 11 36.89460239783608 39.0 37.0 39.0 33.0 39.0 12 36.75919395631971 39.0 37.0 39.0 32.0 39.0 13 36.798557901214366 39.0 37.0 39.0 32.0 39.0 14 37.80432095172516 40.0 37.0 41.0 32.0 41.0 15 37.81836305644114 40.0 37.0 41.0 32.0 41.0 16 37.712185723756484 40.0 37.0 41.0 32.0 41.0 17 37.727327504756175 39.0 37.0 41.0 32.0 41.0 18 37.685529555996546 39.0 37.0 41.0 32.0 41.0 19 37.726770345200975 40.0 37.0 41.0 32.0 41.0 20 37.60435082309159 39.0 37.0 41.0 32.0 41.0 21 37.54470034004304 39.0 36.0 41.0 32.0 41.0 22 37.40870801581279 39.0 36.0 41.0 32.0 41.0 23 37.23725698856359 39.0 36.0 41.0 31.0 41.0 24 37.08777129954721 39.0 36.0 41.0 31.0 41.0 25 37.26447251230272 39.0 36.0 41.0 31.0 41.0 26 37.14910424338135 39.0 36.0 41.0 31.0 41.0 27 37.03609566597955 39.0 36.0 41.0 31.0 41.0 28 36.874458993312984 39.0 35.0 41.0 30.0 41.0 29 36.76695245803641 39.0 35.0 41.0 30.0 41.0 30 36.5820999497385 39.0 35.0 40.0 30.0 41.0 31 36.44405287085429 39.0 35.0 40.0 30.0 41.0 32 36.26977138520774 38.0 35.0 40.0 30.0 41.0 33 36.14423806600474 38.0 35.0 40.0 30.0 41.0 34 35.96363929885753 38.0 35.0 40.0 29.0 41.0 35 35.831054726466505 38.0 35.0 40.0 28.0 41.0 36 35.645678371044106 38.0 35.0 40.0 27.0 41.0 37 35.59365497034278 38.0 35.0 40.0 27.0 41.0 38 35.41627396435863 38.0 34.0 40.0 26.0 41.0 39 35.33239582635511 38.0 34.0 40.0 25.0 41.0 40 35.18118740877976 38.0 34.0 40.0 25.0 41.0 41 35.06649783487504 38.0 34.0 40.0 24.0 41.0 42 34.82624016505394 38.0 34.0 40.0 23.0 41.0 43 34.47734846230186 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 4.0 13 2.0 14 4.0 15 17.0 16 37.0 17 87.0 18 198.0 19 420.0 20 1013.0 21 1980.0 22 3773.0 23 6500.0 24 10420.0 25 16265.0 26 23355.0 27 32975.0 28 44210.0 29 58039.0 30 74121.0 31 91467.0 32 112348.0 33 137935.0 34 169685.0 35 208372.0 36 268509.0 37 367291.0 38 506870.0 39 595815.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.98047635311616 21.574594402852714 13.919288007195485 23.52564123683564 2 18.7261253286857 23.30526669529339 35.23097045699896 22.73763751902195 3 19.67139300504848 24.69106381234046 32.165201834892606 23.472341347718444 4 13.969988794576881 16.64904036404996 36.204352360588395 33.17661848078477 5 12.96007303841948 38.41702990028601 34.89030509427601 13.732591967018498 6 32.392495112041416 37.38573561717501 14.125019722057186 16.096749548726386 7 26.127964394502644 32.80055408456159 22.00308011859225 19.06840140234351 8 26.39336562808758 35.0558788569663 19.427772976150862 19.122982538795256 9 24.680557584197167 14.651282912956082 21.787610923987987 38.88054857885876 10 16.267484907821576 27.848423315333637 33.94038832044215 21.94370345640263 11 33.04794464132945 22.837904274717 23.319287201840016 20.794863882113532 12 20.606410702734877 27.257987936507238 31.27898135711914 20.856620003638742 13 30.741296761409416 21.289754816849353 26.342701447772882 21.62624697396835 14 20.369123696376594 22.94549244375233 27.91248568206104 28.772898177810042 15 22.843175692321996 29.608893760069233 25.393882885940066 22.154047661668706 16 21.818983180151065 28.535281707851446 26.709650684387416 22.936084427610073 17 21.507127578922088 27.28185574399653 27.460864300166232 23.750152376915146 18 22.48951482092006 26.287461384120515 29.426078068962592 21.79694572599684 19 22.555737004582838 25.472258615747702 30.514296340794218 21.45770803887524 20 23.28513280860764 25.3065750318573 30.142954256175518 21.26533790335954 21 22.16568870887974 26.146304534920027 30.535857903081325 21.152148853118906 22 21.32896098528652 26.3966602640907 30.18673630795036 22.08764244267242 23 22.042615750629732 26.504504682592938 30.673829937478793 20.779049629298537 24 22.097929028415503 26.492387743514783 28.987964694680592 22.421718533389125 25 22.04016307716074 26.64749188512849 29.799506756383266 21.512838281327504 26 21.681450430554015 27.209044288327505 29.82963437227849 21.279870908839985 27 20.986575090428605 27.162480099483368 29.643377616901923 22.207567193186108 28 21.343603811967068 26.77792286378547 29.85335575150098 22.025117572746478 29 21.607540762883946 26.703098019447868 29.424503965094427 22.26485725257375 30 21.640011231048064 26.90191099870301 30.43701882298763 21.0210589472613 31 22.08559244693714 26.71495870905912 30.200061280229658 20.999387563774086 32 21.623501443965747 26.609530356959166 29.631663355557485 22.135304843517602 33 21.402321546956067 26.452778897343904 30.154705124586663 21.990194431113373 34 20.902305622882054 26.685050735564094 30.6500719511896 21.76257169036425 35 20.696134623219937 27.991483732002592 29.75795773567721 21.554423909100258 36 22.17908689529244 26.35701481085312 29.673651661063953 21.790246632790485 37 21.361175203983727 26.674690935687607 29.898565478877178 22.06556838145149 38 21.234624574397092 25.757281237084566 30.831093896027877 22.17700029249046 39 20.727580093516412 25.653829666586496 31.506238027201245 22.112352212695843 40 20.009495873102335 26.10391355167984 31.259140326967 22.62745024825082 41 20.937118943315056 25.302475040386746 31.2298180665392 22.530587949759 42 19.904360377536 26.886060138821318 30.677344215882123 22.53223526776056 43 20.158047349776496 26.62347764937239 30.183917563814354 23.03455743703676 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1066.0 1 978.5 2 891.0 3 1601.0 4 2311.0 5 2311.0 6 3567.5 7 4824.0 8 5308.0 9 5792.0 10 8689.5 11 11587.0 12 11587.0 13 20865.0 14 30143.0 15 44844.0 16 59545.0 17 55529.0 18 51513.0 19 51513.0 20 55733.5 21 59954.0 22 50029.5 23 40105.0 24 45330.5 25 50556.0 26 50556.0 27 57441.5 28 64327.0 29 69901.0 30 75475.0 31 83454.5 32 91434.0 33 91434.0 34 101379.5 35 111325.0 36 120732.0 37 130139.0 38 138348.5 39 146558.0 40 146558.0 41 150604.5 42 154651.0 43 161686.0 44 168721.0 45 176739.5 46 184758.0 47 184758.0 48 221461.0 49 258164.0 50 242059.0 51 225954.0 52 207610.5 53 189267.0 54 189267.0 55 173159.5 56 157052.0 57 137257.5 58 117463.0 59 106204.0 60 94945.0 61 94945.0 62 84205.5 63 73466.0 64 63946.0 65 54426.0 66 46829.5 67 39233.0 68 39233.0 69 33848.0 70 28463.0 71 23830.0 72 19197.0 73 15819.5 74 12442.0 75 12442.0 76 9864.5 77 7287.0 78 5669.5 79 4052.0 80 3199.0 81 2346.0 82 2346.0 83 1733.5 84 1121.0 85 849.0 86 577.0 87 449.0 88 321.0 89 321.0 90 237.5 91 154.0 92 108.0 93 62.0 94 43.0 95 24.0 96 24.0 97 19.0 98 14.0 99 11.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2731713.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.52214377030939 #Duplication Level Percentage of deduplicated Percentage of total 1 80.125127371153 42.88468586773203 2 11.461918570521927 12.269329072301074 3 3.5193252701985194 5.6508549925814435 4 1.5567167867336413 3.3327527867684807 5 0.8261968025775027 2.2109912025061518 6 0.47823951177693536 1.5357842343580625 7 0.33807678951327597 1.2666216173613931 8 0.23155031178420182 0.9914455261899213 9 0.19385032978201053 0.9337756698463191 >10 1.1037775335229374 11.163539986208049 >50 0.09823681442531254 3.606145474938248 >100 0.059095505871905415 5.989709157933335 >500 0.004527256879635759 1.6975178512776725 >1k 0.0029495764518726775 2.99401514564435 >5k 1.3718960241268266E-4 0.39907474627109524 >10k+ 2.743792048253653E-4 3.0737566680823276 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 27600 1.0103550409578166 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 25286 0.9256462886108461 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19830 0.7259181326881704 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11007 0.4029339831819814 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5540 0.2028031495255907 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5330 0.19511566551830298 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4885 0.17882552083619327 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4797 0.1756040989664727 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4465 0.1634505528216178 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4238 0.15514074868040675 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3099 0.11344529970754615 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2903 0.1062703146340776 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2762 0.10110871822918441 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 7.321413340274033E-5 0.0 3 0.0 0.0 0.0 7.321413340274033E-5 0.0 4 0.0 0.0 0.0 7.321413340274033E-5 0.0 5 0.0 0.0 0.0 7.321413340274033E-5 0.0 6 0.0 0.0 0.0 7.321413340274033E-5 3.6607066701370166E-5 7 0.0 0.0 0.0 1.0982120010411049E-4 7.321413340274033E-5 8 0.0 0.0 0.0 1.4642826680548066E-4 7.321413340274033E-5 9 0.0 0.0 0.0 3.660706670137017E-4 7.321413340274033E-5 10 3.6607066701370166E-5 0.0 0.0 5.124989338191824E-4 7.321413340274033E-5 11 3.6607066701370166E-5 0.0 0.0 9.517837342356243E-4 7.321413340274033E-5 12 3.6607066701370166E-5 0.0 0.0 0.0012812473345479559 7.321413340274033E-5 13 3.6607066701370166E-5 0.0 0.0 0.0014276756013534364 7.321413340274033E-5 14 7.321413340274033E-5 0.0 0.0 0.0016107109348602873 7.321413340274033E-5 15 7.321413340274033E-5 0.0 0.0 0.001976781601873989 7.321413340274033E-5 16 7.321413340274033E-5 0.0 0.0 0.0027089229359013923 7.321413340274033E-5 17 1.0982120010411049E-4 0.0 0.0 0.003990170270449348 7.321413340274033E-5 18 1.0982120010411049E-4 0.0 0.0 0.0045392762709699 7.321413340274033E-5 19 1.0982120010411049E-4 0.0 0.0 0.0058205236055178565 7.321413340274033E-5 20 1.0982120010411049E-4 0.0 0.0 0.010469621076591867 7.321413340274033E-5 21 1.0982120010411049E-4 0.0 0.0 0.016766036549227537 2.1964240020822098E-4 22 1.0982120010411049E-4 0.0 0.0 0.027565121226131736 2.562494669095912E-4 23 1.0982120010411049E-4 0.0 0.0 0.03492314163310714 2.562494669095912E-4 24 1.0982120010411049E-4 0.0 0.0 0.046381153510636 2.562494669095912E-4 25 1.0982120010411049E-4 0.0 0.0 0.05311685378368811 2.562494669095912E-4 26 1.0982120010411049E-4 0.0 0.0 0.06538022112864712 2.562494669095912E-4 27 1.0982120010411049E-4 0.0 0.0 0.1272095567872613 2.562494669095912E-4 28 1.0982120010411049E-4 0.0 0.0 0.2580798202446597 2.562494669095912E-4 29 1.0982120010411049E-4 0.0 0.0 0.4248982232028035 2.562494669095912E-4 30 1.0982120010411049E-4 0.0 0.0 0.677120912775244 2.562494669095912E-4 31 1.0982120010411049E-4 0.0 0.0 1.0225818012360741 2.562494669095912E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8410 0.0 22.459572 1 TAATACT 655 0.0 17.793892 4 GTATTGG 800 0.0 16.41875 1 CGCGATA 80 3.3846998E-4 16.1875 14 GTATTAG 590 0.0 14.737288 1 GTATCAA 12765 0.0 14.724638 2 CTAATAC 650 0.0 14.515384 3 ATTAGAC 270 0.0 14.388888 3 TAGTACT 375 0.0 13.813333 4 CGAACTA 350 0.0 13.742857 24 TAACGGC 310 0.0 13.725807 36 TATACCG 135 6.574426E-6 13.703703 5 TACCCCG 300 0.0 13.566667 5 TTAACGG 315 0.0 13.507937 35 GGACCCT 1180 0.0 13.169492 6 TGGACCC 1195 0.0 13.158997 5 TTGGACC 1295 0.0 13.142857 4 TACTGGT 635 0.0 13.110235 7 GACGTAT 170 3.7365498E-7 13.058823 28 CGTCTAA 85 0.009409066 13.058823 1 >>END_MODULE