##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088690_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3489994 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.569009574228495 31.0 31.0 34.0 30.0 34.0 2 31.772348032690026 31.0 31.0 34.0 30.0 34.0 3 31.83828854720094 31.0 31.0 34.0 30.0 34.0 4 35.560481192804346 37.0 35.0 37.0 33.0 37.0 5 35.4432729683776 37.0 35.0 37.0 33.0 37.0 6 35.49472692503196 37.0 35.0 37.0 33.0 37.0 7 35.35261063486069 37.0 35.0 37.0 33.0 37.0 8 35.39022932417649 37.0 35.0 37.0 33.0 37.0 9 36.978056695799474 39.0 37.0 39.0 33.0 39.0 10 36.800228882914986 39.0 37.0 39.0 32.0 39.0 11 36.88838089692991 39.0 37.0 39.0 33.0 39.0 12 36.74365228135063 39.0 35.0 39.0 32.0 39.0 13 36.79149820887944 39.0 37.0 39.0 32.0 39.0 14 37.75453510808328 40.0 37.0 41.0 32.0 41.0 15 37.76782338307745 40.0 37.0 41.0 32.0 41.0 16 37.65470370436167 39.0 36.0 41.0 32.0 41.0 17 37.70118430003031 39.0 37.0 41.0 32.0 41.0 18 37.66325013739279 39.0 37.0 41.0 32.0 41.0 19 37.71849980257846 40.0 37.0 41.0 32.0 41.0 20 37.59791965258393 39.0 37.0 41.0 32.0 41.0 21 37.54107313651542 39.0 36.0 41.0 32.0 41.0 22 37.412267470946944 39.0 36.0 41.0 32.0 41.0 23 37.23357661932943 39.0 36.0 41.0 31.0 41.0 24 37.07534310947239 39.0 36.0 41.0 31.0 41.0 25 37.25342937552328 39.0 36.0 41.0 31.0 41.0 26 37.12740623622849 39.0 36.0 41.0 31.0 41.0 27 37.01091148007704 39.0 36.0 41.0 31.0 41.0 28 36.83481060425892 39.0 35.0 41.0 30.0 41.0 29 36.7158003710035 39.0 35.0 41.0 30.0 41.0 30 36.5091951447481 39.0 35.0 40.0 30.0 41.0 31 36.32782807076459 38.0 35.0 40.0 30.0 41.0 32 36.15707849354469 38.0 35.0 40.0 30.0 41.0 33 36.01872266829112 38.0 35.0 40.0 29.0 41.0 34 35.82793380160539 38.0 35.0 40.0 29.0 41.0 35 35.69039201786593 38.0 35.0 40.0 27.0 41.0 36 35.48459281018821 38.0 34.0 40.0 27.0 41.0 37 35.40272160926351 38.0 34.0 40.0 26.0 41.0 38 35.20019604618231 38.0 34.0 40.0 25.0 41.0 39 35.100720516998024 38.0 34.0 40.0 25.0 41.0 40 34.91605974107692 38.0 34.0 40.0 24.0 41.0 41 34.76836435821953 38.0 33.0 40.0 23.0 41.0 42 34.489008290558665 38.0 33.0 40.0 22.0 41.0 43 34.12845638130037 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 2.0 12 3.0 13 1.0 14 6.0 15 17.0 16 40.0 17 83.0 18 241.0 19 550.0 20 1250.0 21 2521.0 22 4904.0 23 8631.0 24 13869.0 25 21477.0 26 31326.0 27 43734.0 28 59442.0 29 76435.0 30 97063.0 31 119824.0 32 147072.0 33 180919.0 34 221138.0 35 270792.0 36 346899.0 37 477924.0 38 630466.0 39 733364.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.98256329380509 21.483360716379455 14.391314139795083 23.14276185002037 2 18.820089662045262 23.523536143615146 35.09281104781269 22.5635631465269 3 19.619775850617508 24.40353765651173 33.181575670330666 22.795110822540096 4 13.621255509321792 16.45994233800975 36.144188213504094 33.77461393916437 5 12.351339285970118 38.70688602903042 35.11183686848745 13.829937816512006 6 32.20340779955496 37.239261729389796 13.574579211310963 16.982751259744287 7 25.560244516179687 33.57424110184717 21.42760130819709 19.43791307377606 8 26.939014794867845 34.5637556970012 19.04602128255808 19.45120822557288 9 24.26356606916803 14.57420843703456 22.104593876092622 39.057631617704786 10 16.160457582448565 28.063142801964702 33.763152601408486 22.013247014178248 11 32.70461209961966 22.538348203463958 23.77196063947388 20.985079057442505 12 20.947715096358333 27.48887247370626 31.143577897268592 20.41983453266682 13 31.540971130609393 21.22828864462231 26.475375029298043 20.755365195470247 14 20.207398637361553 23.302017138138346 28.231251973499095 28.259332251001005 15 22.25791792192193 29.9488480495955 25.9439701042466 21.849263924235974 16 21.272414794982456 28.73483450114814 27.101278684146735 22.89147201972267 17 21.299692778841454 27.155805998520343 27.359645890508695 24.18485533212951 18 22.73468091922221 25.877207811818586 30.00773067231634 21.38038059664286 19 22.267258912192972 24.98732089510756 31.39899380915841 21.34642638354106 20 23.363879708675718 24.580185524674256 31.071973189638726 20.983961577011307 21 22.09427867211233 25.532250198710944 31.803149231775187 20.57032189740154 22 20.714906673191987 25.839700584012466 31.24701647051542 22.198376272280125 23 21.819493099415073 26.063511857040446 32.06867977423457 20.048315269309917 24 21.728375464255812 26.05153475908555 29.742314743234516 22.477775033424127 25 21.524965372433304 26.507610041736463 30.878878301796508 21.088546284033725 26 21.301154099405327 27.114831716043064 30.73764596729966 20.84636821725195 27 20.201410088384105 27.14930168934388 30.46515266215357 22.184135560118442 28 20.735852267940864 26.696263661198273 30.600367794328587 21.96751627653228 29 21.053073443679274 26.56755283819972 29.906956860097754 22.47241685802325 30 21.21711384031033 26.856120669548428 31.53389375454514 20.392871735596106 31 22.041785745190392 26.565059997237817 31.130741198982005 20.262413058589786 32 21.549005528376266 26.45672170210035 30.223576315603978 21.770696453919406 33 21.066311288787315 26.390704396626468 30.95105607631417 21.591928238272043 34 20.227370018401178 26.957983308853827 31.63710310103685 21.177543571708146 35 19.84224041645917 28.975006833822636 30.342201161377353 20.840551588340837 36 22.0392642508841 26.635088770926252 30.21039577718472 21.11525120100493 37 21.175767064355984 27.37635079028789 30.21695739304996 21.230924752306166 38 20.98095297585039 25.92574657721475 31.455870697771974 21.63742974916289 39 20.52298657246975 25.70987228058272 32.225241647979914 21.54189949896762 40 19.397425898153404 26.161620908230788 31.87171668489974 22.569236508716063 41 20.844878243343683 25.317350115788162 31.826616320830354 22.0111553200378 42 19.542755660897985 27.274917951148343 31.206357374826432 21.975969013127244 43 19.935163212314976 27.16394354832702 30.396355982273892 22.50453725708411 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1293.0 1 1164.0 2 1035.0 3 1846.0 4 2657.0 5 2657.0 6 4257.0 7 5857.0 8 6481.0 9 7105.0 10 11101.5 11 15098.0 12 15098.0 13 28698.5 14 42299.0 15 66967.5 16 91636.0 17 84612.0 18 77588.0 19 77588.0 20 83564.0 21 89540.0 22 72147.0 23 54754.0 24 60929.0 25 67104.0 26 67104.0 27 73971.5 28 80839.0 29 86905.0 30 92971.0 31 102198.0 32 111425.0 33 111425.0 34 123058.5 35 134692.0 36 146567.0 37 158442.0 38 166332.5 39 174223.0 40 174223.0 41 178645.0 42 183067.0 43 192693.0 44 202319.0 45 217202.0 46 232085.0 47 232085.0 48 304173.5 49 376262.0 50 348009.5 51 319757.0 52 287686.5 53 255616.0 54 255616.0 55 226679.0 56 197742.0 57 168041.5 58 138341.0 59 122847.5 60 107354.0 61 107354.0 62 94951.5 63 82549.0 64 71930.0 65 61311.0 66 52486.5 67 43662.0 68 43662.0 69 37043.0 70 30424.0 71 25646.5 72 20869.0 73 16852.0 74 12835.0 75 12835.0 76 10325.0 77 7815.0 78 6098.5 79 4382.0 80 3414.0 81 2446.0 82 2446.0 83 1862.5 84 1279.0 85 970.0 86 661.0 87 512.5 88 364.0 89 364.0 90 264.0 91 164.0 92 126.0 93 88.0 94 58.0 95 28.0 96 28.0 97 20.5 98 13.0 99 8.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3489994.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.25921482052065 #Duplication Level Percentage of deduplicated Percentage of total 1 77.46099283998709 36.60745700835761 2 12.536112492655008 11.84893666609191 3 4.2595661567314105 6.039112561295677 4 1.880951254448694 3.555691176036744 5 0.9689159735306452 2.2895104068059324 6 0.5824395162734677 1.6515380531716763 7 0.37879725091247524 1.2531162458006728 8 0.27119751454644286 1.025326527899329 9 0.20577020205389485 0.8752084364274259 >10 1.2404372709131486 11.184663178261335 >50 0.12473491634650623 4.084061296032358 >100 0.07882634365237606 7.048075850101849 >500 0.005659561726259646 1.7915650134573942 >1k 0.004807584691215297 4.644856767129349 >5k 4.2598851694312755E-4 1.540865552227418 >10k+ 3.651330145226808E-4 4.56001526090334 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 45299 1.2979678475091934 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 41648 1.1933544871423847 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32645 0.9353884276018811 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16822 0.4820065593235977 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11345 0.32507219210118987 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 10796 0.3093415060312425 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9901 0.28369676280245754 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9529 0.27303771868948773 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8725 0.25000042980016585 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8284 0.23736430492430644 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5989 0.1716048795499362 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5775 0.1654730638505396 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5374 0.15398307275026835 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4906 0.14057330757588696 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4772 0.13673375942766663 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4286 0.12280823405427058 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4244 0.12160479358990302 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4176 0.11965636617140316 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3942 0.11295148358421248 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3542 0.10149014582833095 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 2.8653344389703822E-5 0.0 0.0 0.0 0.0 6 2.8653344389703822E-5 0.0 0.0 0.0 0.0 7 2.8653344389703822E-5 0.0 0.0 0.0 0.0 8 5.7306688779407645E-5 0.0 0.0 0.0 0.0 9 8.596003316911147E-5 0.0 0.0 1.432667219485191E-4 0.0 10 8.596003316911147E-5 0.0 0.0 2.0057341072792675E-4 0.0 11 8.596003316911147E-5 0.0 0.0 5.157601990146688E-4 0.0 12 1.1461337755881529E-4 0.0 0.0 7.449869541322993E-4 0.0 13 1.7192006633822294E-4 0.0 0.0 9.169070204705223E-4 0.0 14 2.0057341072792675E-4 0.0 0.0 0.0010888270868087452 0.0 15 2.0057341072792675E-4 0.0 0.0 0.001289400497536672 0.0 16 2.0057341072792675E-4 0.0 0.0 0.00194842741849986 0.0 17 2.0057341072792675E-4 0.0 0.0 0.002578800995073344 0.0 18 2.0057341072792675E-4 0.0 0.0 0.0031232145384777164 0.0 19 2.2922675511763058E-4 0.0 0.0 0.004011468214558535 0.0 20 2.2922675511763058E-4 0.0 0.0 0.006504309176462768 0.0 21 2.2922675511763058E-4 0.0 0.0 0.010515777391021303 0.0 22 2.2922675511763058E-4 0.0 0.0 0.016017219513844435 0.0 23 2.2922675511763058E-4 0.0 0.0 0.01971350094011623 0.0 24 2.578800995073344E-4 0.0 0.0 0.026074543394630476 0.0 25 2.578800995073344E-4 0.0 0.0 0.030773691874541903 0.0 26 2.578800995073344E-4 0.0 0.0 0.03985680204607801 0.0 27 2.578800995073344E-4 0.0 0.0 0.0951577567182064 0.0 28 2.578800995073344E-4 0.0 0.0 0.20561639934051462 0.0 29 2.578800995073344E-4 0.0 0.0 0.3467627738041957 0.0 30 2.578800995073344E-4 0.0 0.0 0.5638691642449815 0.0 31 2.578800995073344E-4 0.0 0.0 0.8144140075885518 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11620 0.0 24.820568 1 GTATTGG 1220 0.0 20.471312 1 ATTGGAC 1215 0.0 19.489712 3 CGTATCG 125 4.129106E-10 19.24 10 GTATTAG 645 0.0 17.209301 1 TTGGACC 1860 0.0 17.008066 4 TGGACCC 1910 0.0 16.272251 5 ACGTTTA 160 6.311893E-10 16.1875 26 GGACCCT 1955 0.0 15.70844 6 TTAACGG 370 0.0 15.5 35 GTATCAA 18730 0.0 15.408435 2 GACCCTC 1965 0.0 15.346055 7 CTAATAC 810 0.0 14.617284 3 TATTGGA 1680 0.0 14.315475 2 TAACGGC 405 0.0 14.160494 36 CGCACTA 95 0.0012459632 13.631579 29 TAATACT 870 0.0 13.609195 4 TAGGTCG 180 5.1686584E-8 13.361111 21 AGTACCG 195 1.0280928E-8 13.282052 5 TCTAACG 155 1.8904593E-6 13.129032 2 >>END_MODULE