##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088688_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3946737 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.60808080193841 31.0 31.0 34.0 30.0 34.0 2 31.811215188648244 31.0 31.0 34.0 30.0 34.0 3 31.89028303634116 31.0 31.0 34.0 30.0 34.0 4 35.60167525730749 37.0 35.0 37.0 33.0 37.0 5 35.47462524105356 37.0 35.0 37.0 33.0 37.0 6 35.520894095552855 37.0 35.0 37.0 33.0 37.0 7 35.391149701639605 37.0 35.0 37.0 33.0 37.0 8 35.41500738458124 37.0 35.0 37.0 33.0 37.0 9 37.02675982716862 39.0 37.0 39.0 33.0 39.0 10 36.83647377567849 39.0 37.0 39.0 32.0 39.0 11 36.9207525102382 39.0 37.0 39.0 33.0 39.0 12 36.785785320886596 39.0 37.0 39.0 32.0 39.0 13 36.82864274969424 39.0 37.0 39.0 32.0 39.0 14 37.84659276764578 40.0 37.0 41.0 32.0 41.0 15 37.85296233318815 40.0 37.0 41.0 32.0 41.0 16 37.738107454335065 40.0 37.0 41.0 32.0 41.0 17 37.748978713301646 39.0 37.0 41.0 32.0 41.0 18 37.705962672455755 39.0 37.0 41.0 32.0 41.0 19 37.74771564459451 40.0 37.0 41.0 32.0 41.0 20 37.623499614998416 39.0 37.0 41.0 32.0 41.0 21 37.56171921260525 39.0 36.0 41.0 32.0 41.0 22 37.435303137756584 39.0 36.0 41.0 32.0 41.0 23 37.2783002769123 39.0 36.0 41.0 31.0 41.0 24 37.12555815094849 39.0 36.0 41.0 31.0 41.0 25 37.31890850593794 39.0 36.0 41.0 31.0 41.0 26 37.21579699888794 39.0 36.0 41.0 31.0 41.0 27 37.11340127300096 39.0 36.0 41.0 31.0 41.0 28 36.960913027647905 39.0 36.0 41.0 31.0 41.0 29 36.86249121742847 39.0 35.0 41.0 30.0 41.0 30 36.67824306509402 39.0 35.0 40.0 30.0 41.0 31 36.54798254862181 39.0 35.0 40.0 30.0 41.0 32 36.38569962984612 38.0 35.0 40.0 30.0 41.0 33 36.267103685905596 38.0 35.0 40.0 30.0 41.0 34 36.10076627857392 38.0 35.0 40.0 29.0 41.0 35 35.963739413089854 38.0 35.0 40.0 29.0 41.0 36 35.780836169220294 38.0 35.0 40.0 27.0 41.0 37 35.741537122944855 38.0 35.0 40.0 27.0 41.0 38 35.56322729383792 38.0 35.0 40.0 26.0 41.0 39 35.490146670528084 38.0 34.0 40.0 26.0 41.0 40 35.34115574460624 38.0 34.0 40.0 25.0 41.0 41 35.224438567859984 38.0 34.0 40.0 25.0 41.0 42 34.99492669514082 38.0 34.0 40.0 24.0 41.0 43 34.65685223008273 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 3.0 13 3.0 14 9.0 15 25.0 16 51.0 17 105.0 18 290.0 19 618.0 20 1250.0 21 2612.0 22 4985.0 23 8741.0 24 14164.0 25 21923.0 26 32208.0 27 45342.0 28 61688.0 29 80448.0 30 103434.0 31 129141.0 32 158955.0 33 196782.0 34 242635.0 35 299818.0 36 386138.0 37 531869.0 38 740667.0 39 882831.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.054699109669585 21.51932089723739 13.688320250373916 23.73765974271911 2 18.769429024533434 23.258580442527588 35.00339647663374 22.968594056305246 3 19.437626576080444 24.711400835677676 32.4200472440905 23.430925344151383 4 13.661538633053077 16.633183310669043 36.77992731717366 32.925350739104225 5 12.654428202335247 38.49169579832657 35.327233610955076 13.526642388383111 6 32.065602547116775 37.780221990976344 14.077755877830217 16.076419584076667 7 26.080101106306298 32.83621381409503 22.093871469013518 18.98981361058515 8 26.576384491796638 34.797758249409576 19.361589079789205 19.264268179004578 9 24.628243533835672 14.48908300705114 21.809332620846032 39.07334083826716 10 16.13155373666905 27.76957268751376 34.21527707572103 21.883596500096157 11 33.03592309292461 22.743750090264438 23.604055704750532 20.61627111206042 12 20.58736115429024 27.309015016708738 31.234967011989905 20.868656817011118 13 30.71570261712397 21.29047362416092 26.249684232823217 21.744139525891896 14 20.357297686671295 22.991853776930157 27.903176725482343 28.74767181091621 15 22.762018345787926 29.746268879836684 25.294287407547046 22.197425366828345 16 21.804239806199398 28.512819577286248 26.713738462937865 22.969202153576486 17 21.443942172989992 27.388422385378096 27.26900728373844 23.89862815789347 18 22.519590233653773 26.416530921619557 29.2924256164016 21.77145322832507 19 22.535071376684083 25.580371836278932 30.318159026051138 21.566397760985847 20 23.218344673080573 25.294287407547046 30.151996446684947 21.335371472687438 21 22.2305666681109 26.093301884569453 30.533704171319243 21.142427276000404 22 21.31358132046802 26.39116819793161 30.060705843840115 22.234544637760255 23 22.06698850214747 26.4403227273568 30.790169195464507 20.70251957503122 24 22.067089851692675 26.59085213937488 28.75175113011077 22.59030687882167 25 21.945166348809156 26.68862911311293 29.88932376289578 21.47688077518213 26 21.722906796171117 27.293229825042815 29.708820222882853 21.275043155903216 27 20.82411369189282 27.348794713202324 29.435531174233297 22.391560420671556 28 21.258320480944132 26.942357699537617 29.736057913157122 22.063263906361126 29 21.642308570345577 26.901843218841286 29.109768398553033 22.346079812260104 30 21.662097069047164 27.04786257609767 30.286107232379557 21.003933122475605 31 22.209739336570944 26.847950598177682 30.096760944547356 20.845549120704014 32 21.650391196575804 26.660631301249616 29.514735843812247 22.174241658362337 33 21.337297114046365 26.717615083042016 30.02376393461231 21.921323868299307 34 20.926071334370647 26.93622605205262 30.52488676088627 21.612815852690463 35 20.555106661528242 28.5028113096971 29.59026659237745 21.351815436397207 36 22.21916484427516 26.79476742433053 29.36136864452838 21.624699086865935 37 21.418782148392456 27.0621275245855 29.633973583747792 21.885116743274256 38 21.239418790763104 26.128571526301346 30.614074360668063 22.017935322267483 39 20.80024587399667 25.97963836962027 31.275557504845143 21.944558251537917 40 20.06414412716125 26.33129595410082 31.064370390020922 22.540189528717015 41 21.013966727451056 25.448313378874754 31.172180968734427 22.365538924939766 42 20.022388114536135 27.03397768840437 30.489870493017396 22.4537637040421 43 20.33462072593132 26.653891556493374 30.16099121882203 22.850496498753273 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1075.0 1 1104.0 2 1133.0 3 1964.0 4 2795.0 5 2795.0 6 4354.0 7 5913.0 8 6450.5 9 6988.0 10 10578.0 11 14168.0 12 14168.0 13 26353.5 14 38539.0 15 59481.0 16 80423.0 17 75701.5 18 70980.0 19 70980.0 20 77803.5 21 84627.0 22 70968.0 23 57309.0 24 65333.5 25 73358.0 26 73358.0 27 82646.5 28 91935.0 29 100812.5 30 109690.0 31 122014.5 32 134339.0 33 134339.0 34 149943.0 35 165547.0 36 180683.5 37 195820.0 38 206917.5 39 218015.0 40 218015.0 41 224711.5 42 231408.0 43 242564.0 44 253720.0 45 262847.5 46 271975.0 47 271975.0 48 327287.0 49 382599.0 50 358339.0 51 334079.0 52 304251.5 53 274424.0 54 274424.0 55 248504.5 56 222585.0 57 192827.0 58 163069.0 59 147529.0 60 131989.0 61 131989.0 62 116587.0 63 101185.0 64 88149.0 65 75113.0 66 64156.0 67 53199.0 68 53199.0 69 45166.0 70 37133.0 71 30930.0 72 24727.0 73 20246.0 74 15765.0 75 15765.0 76 12587.0 77 9409.0 78 7405.0 79 5401.0 80 4242.5 81 3084.0 82 3084.0 83 2315.5 84 1547.0 85 1172.5 86 798.0 87 632.5 88 467.0 89 467.0 90 356.5 91 246.0 92 173.5 93 101.0 94 72.0 95 43.0 96 43.0 97 28.5 98 14.0 99 8.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3946737.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.18423652712382 #Duplication Level Percentage of deduplicated Percentage of total 1 77.35999237998892 37.275321705738826 2 12.469828914811849 12.016983717681239 3 4.341193828823784 6.275313307744064 4 1.9194002373060532 3.6993934009828986 5 0.9947461914808577 2.3965542887384625 6 0.6246024467645039 1.8057595218192672 7 0.38844211191377503 1.3101750618284185 8 0.27964014379042923 1.0779397464701566 9 0.19537701045117337 0.8472682875187513 >10 1.2036414403165736 11.042253030251016 >50 0.12618690468394395 4.240030395063528 >100 0.08556400929863307 7.893775874828838 >500 0.006851710418214877 2.2891453258612655 >1k 0.004005615305806338 3.687687933393699 >5k 3.162327873005004E-4 1.1935229207948796 >10k+ 2.1082185820033359E-4 2.9488754812847424 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38155 0.9667479743393086 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35663 0.9036072076756064 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 27638 0.7002746826048961 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14661 0.37147142056843413 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9683 0.2453419115588396 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8420 0.21334079265986056 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7922 0.20072277428164076 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7541 0.19106923010071358 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6818 0.17275029980462342 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6613 0.16755613561278596 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4657 0.11799620800676609 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4615 0.11693203778209696 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4200 0.1064170224669138 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4181 0.10593561212718253 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4129 0.10461806803949694 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 2.5337386301646143E-5 0.0 4 0.0 0.0 0.0 1.0134954520658457E-4 0.0 5 2.5337386301646143E-5 0.0 0.0 1.0134954520658457E-4 0.0 6 2.5337386301646143E-5 0.0 0.0 1.0134954520658457E-4 0.0 7 2.5337386301646143E-5 0.0 0.0 1.0134954520658457E-4 2.5337386301646143E-5 8 2.5337386301646143E-5 0.0 0.0 1.2668693150823073E-4 2.5337386301646143E-5 9 2.5337386301646143E-5 0.0 0.0 3.54723408223046E-4 2.5337386301646143E-5 10 2.5337386301646143E-5 0.0 0.0 4.053981808263383E-4 2.5337386301646143E-5 11 7.601215890493843E-5 0.0 0.0 4.3073556712798446E-4 2.5337386301646143E-5 12 7.601215890493843E-5 0.0 0.0 6.841094301444459E-4 2.5337386301646143E-5 13 7.601215890493843E-5 0.0 0.0 7.347842027477382E-4 2.5337386301646143E-5 14 7.601215890493843E-5 0.0 0.0 8.86808520557615E-4 2.5337386301646143E-5 15 7.601215890493843E-5 0.0 0.0 0.001064170224669138 2.5337386301646143E-5 16 7.601215890493843E-5 0.0 0.0 0.0015455805644004148 2.5337386301646143E-5 17 7.601215890493843E-5 0.0 0.0 0.002255027380846507 2.5337386301646143E-5 18 7.601215890493843E-5 0.0 0.0 0.0027111003342761373 2.5337386301646143E-5 19 1.5202431780987686E-4 0.0 0.0 0.003496559309627168 2.5337386301646143E-5 20 1.5202431780987686E-4 0.0 0.0 0.004966127715122644 2.5337386301646143E-5 21 1.5202431780987686E-4 0.0 0.0 0.008437349638448166 2.5337386301646143E-5 22 1.5202431780987686E-4 0.0 0.0 0.013631513830285626 2.5337386301646143E-5 23 1.5202431780987686E-4 0.0 0.0 0.017178747912516085 2.5337386301646143E-5 24 1.77361704111523E-4 0.0 0.0 0.02305702153449799 2.5337386301646143E-5 25 1.77361704111523E-4 0.0 0.0 0.028225848340033804 2.5337386301646143E-5 26 1.77361704111523E-4 0.0 0.0 0.03739798218122971 2.5337386301646143E-5 27 1.77361704111523E-4 0.0 0.0 0.09210139920648373 2.5337386301646143E-5 28 1.77361704111523E-4 0.0 0.0 0.20092547337205394 2.5337386301646143E-5 29 1.77361704111523E-4 0.0 0.0 0.3328572438447254 2.5337386301646143E-5 30 2.0269909041316914E-4 0.0 0.0 0.5210380119070513 2.5337386301646143E-5 31 2.0269909041316914E-4 0.0 0.0 0.7594628170055415 7.601215890493843E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11165 0.0 23.015226 1 GTATTGG 1240 0.0 16.411291 1 ATTGGAC 1355 0.0 15.291513 3 GGACCCT 1650 0.0 14.8 6 GTATCAA 17395 0.0 14.751079 2 TTAACGG 490 0.0 14.346938 35 CGCGAAT 130 4.4502776E-6 14.230768 35 TTGGACC 1815 0.0 14.168045 4 GTATTAG 1080 0.0 13.874999 1 GACCCTC 1670 0.0 13.847305 7 TGCGGTA 215 1.9826984E-10 13.767442 36 TAACGGC 520 0.0 13.51923 36 CGAACTA 620 0.0 13.42742 24 TGGACCC 1845 0.0 13.336043 5 GGGTAAG 580 0.0 12.75862 1 TTACGCT 145 1.3738665E-5 12.75862 4 TAAACGT 275 6.184564E-11 12.109092 4 AGTACCG 430 0.0 12.046512 5 TATTAGA 1075 0.0 12.046511 2 TATACTG 645 0.0 12.046511 5 >>END_MODULE