##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088685_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2823243 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.581855688653086 31.0 31.0 34.0 30.0 34.0 2 31.771878651607388 31.0 31.0 34.0 30.0 34.0 3 31.835472539912434 31.0 31.0 34.0 30.0 34.0 4 35.54522724398856 37.0 35.0 37.0 33.0 37.0 5 35.44150290995143 37.0 35.0 37.0 33.0 37.0 6 35.50340052202379 37.0 35.0 37.0 33.0 37.0 7 35.35590453956673 37.0 35.0 37.0 33.0 37.0 8 35.401925728674435 37.0 35.0 37.0 33.0 37.0 9 36.9896030911969 39.0 37.0 39.0 33.0 39.0 10 36.824493322041356 39.0 37.0 39.0 32.0 39.0 11 36.91382994662521 39.0 37.0 39.0 33.0 39.0 12 36.769379752291954 39.0 37.0 39.0 32.0 39.0 13 36.82054715091829 39.0 37.0 39.0 32.0 39.0 14 37.77693064323546 40.0 37.0 41.0 32.0 41.0 15 37.793884196294826 40.0 37.0 41.0 32.0 41.0 16 37.66881773903274 39.0 37.0 41.0 32.0 41.0 17 37.73033281230131 39.0 37.0 41.0 32.0 41.0 18 37.702739013255325 39.0 37.0 41.0 32.0 41.0 19 37.75800276490546 40.0 37.0 41.0 32.0 41.0 20 37.642865669019635 39.0 37.0 41.0 32.0 41.0 21 37.58827915273322 39.0 37.0 41.0 32.0 41.0 22 37.45832611645544 39.0 36.0 41.0 32.0 41.0 23 37.27902805390822 39.0 36.0 41.0 31.0 41.0 24 37.12254665999349 39.0 36.0 41.0 31.0 41.0 25 37.29188596234897 39.0 36.0 41.0 31.0 41.0 26 37.15820388113953 39.0 36.0 41.0 31.0 41.0 27 37.044625985081694 39.0 36.0 41.0 31.0 41.0 28 36.86470629697833 39.0 35.0 41.0 30.0 41.0 29 36.74503611626771 39.0 35.0 41.0 30.0 41.0 30 36.51778823147706 39.0 35.0 40.0 30.0 41.0 31 36.330285419993956 38.0 35.0 40.0 30.0 41.0 32 36.15742994846706 38.0 35.0 40.0 30.0 41.0 33 36.002075273010504 38.0 35.0 40.0 30.0 41.0 34 35.805073456305394 38.0 35.0 40.0 29.0 41.0 35 35.64274984477071 38.0 35.0 40.0 27.0 41.0 36 35.43319473385748 38.0 34.0 40.0 26.0 41.0 37 35.34078965218367 38.0 34.0 40.0 26.0 41.0 38 35.13061008209353 38.0 34.0 40.0 25.0 41.0 39 35.016224604116616 38.0 34.0 40.0 24.0 41.0 40 34.81099926573802 38.0 34.0 40.0 23.0 41.0 41 34.64893103427512 38.0 33.0 40.0 23.0 41.0 42 34.346964820243954 38.0 33.0 40.0 21.0 41.0 43 33.97875811610974 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 10.0 14 7.0 15 19.0 16 41.0 17 88.0 18 176.0 19 501.0 20 1009.0 21 2069.0 22 3862.0 23 6764.0 24 11244.0 25 17338.0 26 25532.0 27 35779.0 28 48117.0 29 62564.0 30 77985.0 31 96660.0 32 119578.0 33 146282.0 34 178820.0 35 217869.0 36 280597.0 37 389204.0 38 512678.0 39 588446.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38180808382417 21.442539660950192 14.412397374225314 22.763254881000325 2 18.810885212502075 23.504069610727804 35.32813151400712 22.356913662763 3 19.9703674108109 24.58222689297379 32.97466778453006 22.47273791168525 4 13.688371847552618 16.347476997197905 36.01060907615816 33.953542079091314 5 12.38026623992338 38.73534796685939 35.00839283051441 13.87599296270282 6 32.10637554046888 36.941311817650835 13.317380048405328 17.63493259347495 7 25.450589977554184 33.452416246139634 21.549402584191302 19.547591192114883 8 26.820433097682344 34.741749116175974 18.939248233326 19.49856955281568 9 24.032469043578608 14.66742324341192 22.320324534586643 38.97978317842283 10 16.49840272339292 27.720816096949502 33.561475225476514 22.21930595418106 11 32.29456337977283 22.46522881664809 23.847929491014412 21.392278312564663 12 20.8563697846767 27.69843049287645 31.143015319616485 20.302184402830363 13 31.64431825386621 20.972016932300903 26.841756093967117 20.54190871986577 14 20.024879190349537 23.52471962208 28.440909974805567 28.009491212764893 15 22.38425810318134 29.594193627682774 26.363759690540277 21.657788578595607 16 21.084405416041058 28.600265722787586 27.461185594013692 22.85414326715766 17 21.134666764426584 26.926800137288925 27.617318098371268 24.32121499991322 18 22.703465482779908 25.45778029025486 30.323036309662328 21.515717917302904 19 22.27976833733405 24.65678653945126 31.80749938988603 21.25594573332866 20 23.43099761515392 24.14202390655002 31.60840211062243 20.81857636767363 21 21.89683991069844 25.374365578875075 32.39090648591 20.337888024516488 22 20.370970546991526 25.645720187741546 31.81327289220234 22.17003637306459 23 21.611104676430614 25.87226816820231 32.81584334044218 19.700783814924893 24 21.625768663908847 25.877510366624477 30.193433579752078 22.303287389714594 25 21.48989654804776 26.268337511152957 31.241058598214888 21.000707342584395 26 21.171999718054735 27.030439816905595 31.28728203700496 20.510278428034713 27 20.00621271353546 26.91298623604132 30.998111037555038 22.08269001286818 28 20.526146704339652 26.503988498333296 31.192674523588654 21.77719027373839 29 20.978073796694087 26.254169407309252 30.43032427601875 22.337432519977913 30 21.086920254473313 26.53802736781779 32.148490229144286 20.22656214856461 31 21.794864983283407 26.255161174578312 31.844548981437303 20.105424860700975 32 21.277693772728735 26.07338440226364 30.841128446966838 21.807793378040785 33 20.72729835866059 26.13629078332967 31.579747120598544 21.556663737411196 34 20.04092456795253 26.686013212465237 32.12482949572531 21.14823272385693 35 19.604051085932028 28.850439016407726 30.763380977124534 20.782128920535712 36 21.954645774380737 26.399888355341712 30.64815887261564 20.99730699766191 37 20.98165124291462 27.025303879262253 30.680603830417713 21.31244104740541 38 20.700201860059515 25.547428967325875 32.12369604741781 21.628673125196805 39 20.286564068342685 25.276676502872757 32.777447779025756 21.659311649758806 40 19.071259540889677 26.067823421504986 32.29013584732168 22.570781190283657 41 20.746106516513102 25.06659894313029 32.19513871104967 21.992155829306938 42 19.30850443975244 27.225605447352564 31.511633961369956 21.954256151525037 43 19.783313019814447 27.121505304360976 30.508673890274412 22.586507785550165 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1236.0 1 1038.0 2 840.0 3 1629.0 4 2418.0 5 2418.0 6 4070.5 7 5723.0 8 6199.5 9 6676.0 10 10220.5 11 13765.0 12 13765.0 13 26085.5 14 38406.0 15 59358.0 16 80310.0 17 74029.5 18 67749.0 19 67749.0 20 72638.0 21 77527.0 22 60803.0 23 44079.0 24 48147.0 25 52215.0 26 52215.0 27 56745.5 28 61276.0 29 65993.5 30 70711.0 31 77341.5 32 83972.0 33 83972.0 34 92831.5 35 101691.0 36 111470.0 37 121249.0 38 128308.5 39 135368.0 40 135368.0 41 140067.5 42 144767.0 43 154264.0 44 163761.0 45 177262.0 46 190763.0 47 190763.0 48 254183.5 49 317604.0 50 292368.5 51 267133.0 52 240018.0 53 212903.0 54 212903.0 55 187790.5 56 162678.0 57 135320.5 58 107963.0 59 95794.0 60 83625.0 61 83625.0 62 73939.5 63 64254.0 64 55811.5 65 47369.0 66 40403.0 67 33437.0 68 33437.0 69 28511.0 70 23585.0 71 19601.0 72 15617.0 73 12821.5 74 10026.0 75 10026.0 76 7888.0 77 5750.0 78 4475.0 79 3200.0 80 2507.5 81 1815.0 82 1815.0 83 1349.0 84 883.0 85 666.5 86 450.0 87 335.0 88 220.0 89 220.0 90 182.0 91 144.0 92 101.5 93 59.0 94 36.0 95 13.0 96 13.0 97 11.5 98 10.0 99 6.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2823243.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.00254732772116 #Duplication Level Percentage of deduplicated Percentage of total 1 79.69548874955441 38.25586470506355 2 11.671628393715231 11.205357887217792 3 3.6310951035316132 5.229054436761985 4 1.541247565920507 2.959352369073367 5 0.8131907691651874 1.9517614191658939 6 0.47981742130160365 1.3819475084817214 7 0.33964174328594043 1.1412568199587152 8 0.2351267615069224 0.9029346797799879 9 0.17579363980924484 0.7594688263370079 >10 1.1998216255804068 11.12402775970921 >50 0.1244808676814491 4.115986596478365 >100 0.07992815585344906 7.507906511165798 >500 0.006591796949886916 2.0908452648347415 >1k 0.005406754801588855 5.28646914789636 >5k 3.7032567134170235E-4 1.461305617765826 >10k+ 3.7032567134170235E-4 4.626460450309752 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 38737 1.3720745964835475 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37319 1.3218486683576298 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 28745 1.0181553624679136 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 15321 0.5426737974733312 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10006 0.3544151176501633 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9254 0.3277790824240067 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8652 0.30645608613923775 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8297 0.2938818939779537 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7484 0.26508522291563286 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7415 0.26264122500259457 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4621 0.16367701965434786 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4568 0.16179974589505755 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4481 0.15871818330905277 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4432 0.15698259058819947 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4306 0.15251963787743386 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3955 0.14008712675458684 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3938 0.13948498234122958 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3896 0.13799733143764104 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3857 0.13661594131288027 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3385 0.1198975787773139 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3160 0.11192802036523247 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3154 0.11171549880757696 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3127 0.11075915179812718 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3053 0.10813805258704262 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2843 0.10069979806909997 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.084051921850156E-5 2 0.0 0.0 0.0 0.0 7.084051921850156E-5 3 0.0 0.0 0.0 0.0 1.0626077882775235E-4 4 0.0 0.0 0.0 3.542025960925078E-5 1.0626077882775235E-4 5 0.0 0.0 0.0 3.542025960925078E-5 1.0626077882775235E-4 6 0.0 0.0 0.0 3.542025960925078E-5 1.0626077882775235E-4 7 0.0 0.0 0.0 7.084051921850156E-5 1.0626077882775235E-4 8 7.084051921850156E-5 0.0 0.0 1.0626077882775235E-4 1.0626077882775235E-4 9 1.4168103843700312E-4 0.0 0.0 4.6046337492026013E-4 1.0626077882775235E-4 10 2.4794181726475544E-4 0.0 0.0 7.438254517942664E-4 1.0626077882775235E-4 11 2.4794181726475544E-4 0.0 0.0 0.0012397090863237772 1.0626077882775235E-4 12 2.4794181726475544E-4 0.0 0.0 0.0020543750573365454 1.0626077882775235E-4 13 2.4794181726475544E-4 0.0 0.0 0.0023377371342105514 1.0626077882775235E-4 14 2.8336207687400624E-4 0.0 0.0 0.002621099211084558 1.0626077882775235E-4 15 2.8336207687400624E-4 0.0 0.0 0.0037545475185805826 1.0626077882775235E-4 16 2.8336207687400624E-4 0.0 0.0 0.0053484592009968674 1.0626077882775235E-4 17 2.8336207687400624E-4 0.0 0.0 0.006906950623803902 1.0626077882775235E-4 18 2.8336207687400624E-4 0.0 0.0 0.008111239450518429 1.0626077882775235E-4 19 2.8336207687400624E-4 0.0 0.0 0.010236455027073476 1.0626077882775235E-4 20 2.8336207687400624E-4 0.0 0.0 0.016222478901036858 1.0626077882775235E-4 21 2.8336207687400624E-4 0.0 0.0 0.025679688216706815 1.4168103843700312E-4 22 2.8336207687400624E-4 0.0 0.0 0.041547964521651166 1.4168103843700312E-4 23 2.8336207687400624E-4 0.0 0.0 0.05121769539497663 1.4168103843700312E-4 24 2.8336207687400624E-4 0.0 0.0 0.06566916131555095 1.4168103843700312E-4 25 2.8336207687400624E-4 0.0 0.0 0.07473674777551914 1.4168103843700312E-4 26 2.8336207687400624E-4 0.0 0.0 0.09180931290717802 1.4168103843700312E-4 27 2.8336207687400624E-4 0.0 0.0 0.15460943319437964 1.4168103843700312E-4 28 3.1878233648325704E-4 0.0 0.0 0.295617486698807 1.4168103843700312E-4 29 3.1878233648325704E-4 0.0 0.0 0.4725062631874054 1.4168103843700312E-4 30 3.1878233648325704E-4 0.0 0.0 0.7345099235170335 1.4168103843700312E-4 31 3.1878233648325704E-4 0.0 0.0 1.070896129026088 1.4168103843700312E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12555 0.0 22.073277 1 GATCGGT 60 3.7287617E-5 21.583334 11 GTATTGG 1075 0.0 20.306976 1 ATTGGAC 1165 0.0 18.103004 3 TTAACGG 345 0.0 17.15942 35 TTGGACC 1720 0.0 15.811047 4 GGACCCT 1675 0.0 15.352239 6 TAACGGC 390 0.0 15.179487 36 GTATTAG 585 0.0 14.863248 1 ATTCGCG 75 0.0041063754 14.8 29 GTATCAA 18860 0.0 14.752916 2 CGAACTA 465 0.0 14.720431 24 TGGACCC 1745 0.0 14.630373 5 TATTGGA 1395 0.0 14.587814 2 TATACCG 90 8.279276E-4 14.388889 5 TAATACT 665 0.0 14.18797 4 ATCCGTC 145 8.922434E-7 14.034483 7 CTAATAC 610 0.0 13.950819 3 TCTAATA 635 0.0 13.692913 2 TCGGTTC 95 0.0012458599 13.631579 13 >>END_MODULE