##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088680_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1538993 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.642646197870945 31.0 31.0 34.0 30.0 34.0 2 31.839389133023996 31.0 31.0 34.0 30.0 34.0 3 31.896937153060474 31.0 31.0 34.0 30.0 34.0 4 35.58795589063758 37.0 35.0 37.0 33.0 37.0 5 35.50110169441966 37.0 35.0 37.0 33.0 37.0 6 35.574347641607204 37.0 35.0 37.0 33.0 37.0 7 35.42154187835812 37.0 35.0 37.0 33.0 37.0 8 35.47700216960051 37.0 35.0 37.0 33.0 37.0 9 37.06435571831711 39.0 37.0 39.0 33.0 39.0 10 36.9109729543929 39.0 37.0 39.0 33.0 39.0 11 36.99503636468782 39.0 37.0 39.0 33.0 39.0 12 36.84114352696861 39.0 37.0 39.0 32.0 39.0 13 36.88012161198914 39.0 37.0 39.0 33.0 39.0 14 37.81854888228861 40.0 37.0 41.0 32.0 41.0 15 37.8265703612687 40.0 37.0 41.0 32.0 41.0 16 37.71964589832442 39.0 37.0 41.0 32.0 41.0 17 37.81104332508335 40.0 37.0 41.0 32.0 41.0 18 37.78279693279956 40.0 37.0 41.0 32.0 41.0 19 37.84466336104193 40.0 37.0 41.0 32.0 41.0 20 37.737933830758166 40.0 37.0 41.0 32.0 41.0 21 37.68339232212232 40.0 37.0 41.0 32.0 41.0 22 37.56593694708163 39.0 36.0 41.0 32.0 41.0 23 37.36400555428127 39.0 36.0 41.0 31.0 41.0 24 37.202720220299895 39.0 36.0 41.0 31.0 41.0 25 37.37723368462365 39.0 36.0 41.0 31.0 41.0 26 37.239253199982066 39.0 36.0 41.0 31.0 41.0 27 37.13249442979922 39.0 36.0 41.0 31.0 41.0 28 36.94224405179231 39.0 35.0 41.0 31.0 41.0 29 36.81319213277773 39.0 35.0 41.0 30.0 41.0 30 36.574970126569774 39.0 35.0 40.0 30.0 41.0 31 36.36206402498257 38.0 35.0 40.0 30.0 41.0 32 36.18362331732503 38.0 35.0 40.0 30.0 41.0 33 36.00160884422476 38.0 35.0 40.0 30.0 41.0 34 35.808431877208015 38.0 35.0 40.0 29.0 41.0 35 35.634424588026064 38.0 35.0 40.0 27.0 41.0 36 35.418173441984464 38.0 34.0 40.0 26.0 41.0 37 35.30123009006539 38.0 34.0 40.0 25.0 41.0 38 35.091939339555154 38.0 34.0 40.0 25.0 41.0 39 34.95097443588112 38.0 34.0 40.0 24.0 41.0 40 34.72114947891251 38.0 33.0 40.0 23.0 41.0 41 34.53245791241416 38.0 33.0 40.0 22.0 41.0 42 34.19965652865218 38.0 33.0 40.0 20.0 41.0 43 33.821655459121644 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 0.0 14 1.0 15 8.0 16 21.0 17 45.0 18 87.0 19 259.0 20 511.0 21 1034.0 22 2049.0 23 3569.0 24 5913.0 25 9353.0 26 13204.0 27 18881.0 28 25601.0 29 33664.0 30 42127.0 31 51619.0 32 63871.0 33 78637.0 34 97144.0 35 118555.0 36 154390.0 37 218196.0 38 276872.0 39 323379.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34508733957854 21.345451213878167 14.971283170228844 22.338178276314448 2 18.92588205404443 23.861641995772562 35.37365017254789 21.838825777635115 3 19.82543130475577 24.02447574485394 34.02042764327064 22.129665307119655 4 13.414745876037124 16.075186826710713 35.81653717723213 34.693530120020036 5 11.977312437418494 38.88594684966078 34.939340204926204 14.197400507994512 6 31.91203598716823 36.868848656231705 12.722799908771515 18.49631544782855 7 25.136696528184338 34.25285235215495 20.630698125332604 19.97975299432811 8 27.40109929025018 34.12673092080341 18.620422575021458 19.85174721392495 9 23.862876569289142 14.463353634486968 22.6731375646283 39.000632231595596 10 16.31599363999706 27.993694578207958 33.132249464422515 22.558062317372464 11 32.2550524921166 22.149548438491923 24.282891475139913 21.312507594251564 12 21.31959014758352 27.72000912284851 30.99741194404393 19.96298878552404 13 32.757783823578144 21.028750618098975 26.713181931301833 19.500283627021044 14 19.977413802401962 23.698158471156137 28.691098659967913 27.633329066473987 15 21.73739581661515 29.816639841766662 26.78043369917862 21.66553064243957 16 20.828359843092205 28.779143244966026 27.555291024715512 22.837205887226258 17 21.11257166211932 26.786346656547494 27.161267140266393 24.939814541066788 18 23.290554278024654 25.05326534948502 30.63854091604055 21.017639456449768 19 22.442792137456117 24.183670750939086 32.25427276147455 21.119264350130248 20 23.909270542491097 23.32447256095382 32.199561661424056 20.566695235131025 21 22.12362239464377 24.653913305648565 33.312302265182495 19.91016203452517 22 20.056101619695475 24.914928138074703 32.69196156187844 22.33700868035137 23 21.78034597948139 25.23585227483166 33.82289588061804 19.160905865068912 24 21.508544873173562 25.098359771616895 30.78701462579752 22.606080729412025 25 21.261175326983295 26.00018323670088 32.07629924242671 20.66234219388912 26 20.98502072459069 26.763669490374546 31.853881076782027 20.397428708252736 27 19.20885929955497 26.94450202177658 31.605861755056715 22.240776923611737 28 20.24973472913782 26.031307484829362 31.57473750692823 22.144220279104584 29 20.39314018972146 25.949435767414148 30.776423284576342 22.88100075828805 30 20.839471004741412 26.273348871632297 33.112951131031785 19.77422899259451 31 22.009586788244 25.926693623687697 32.40320131410604 19.66051827396226 32 21.517251865343116 25.901612288035096 31.038932600733077 21.542203245888707 33 20.758054130200723 25.742157371735935 32.00358936005557 21.496199138007775 34 19.441478941099795 26.736638828116828 32.850441814875055 20.971440415908322 35 18.928741066398615 29.45075123798484 31.28454775297873 20.335959942637814 36 22.10010052027527 26.036180801342173 31.11326692194182 20.75045175644074 37 20.938951639156254 27.412145474345888 30.954591736284698 20.69431115021316 38 20.710880426356717 25.28874400338403 32.620616208130905 21.379759362128354 39 20.070331703912885 25.027794148511397 33.48111394918625 21.420760198389466 40 18.518862658894484 25.755932613078812 32.914119817309114 22.811084910717593 41 20.645123142210522 24.824609338703947 32.8276346935951 21.702632825490433 42 19.11236763260132 27.349507112767895 31.983641251129797 21.55448400350099 43 19.426339171133332 27.671146002613394 30.73106895223045 22.17144587402282 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 588.0 1 498.5 2 409.0 3 842.5 4 1276.0 5 1276.0 6 2108.0 7 2940.0 8 3281.0 9 3622.0 10 5785.0 11 7948.0 12 7948.0 13 15155.5 14 22363.0 15 35989.0 16 49615.0 17 45956.5 18 42298.0 19 42298.0 20 44413.0 21 46528.0 22 35927.0 23 25326.0 24 27263.5 25 29201.0 26 29201.0 27 31167.0 28 33133.0 29 34510.0 30 35887.0 31 39085.5 32 42284.0 33 42284.0 34 46429.5 35 50575.0 36 55092.5 37 59610.0 38 63014.5 39 66419.0 40 66419.0 41 69159.0 42 71899.0 43 76059.0 44 80219.0 45 91018.5 46 101818.0 47 101818.0 48 148312.5 49 194807.0 50 175747.0 51 156687.0 52 138657.0 53 120627.0 54 120627.0 55 104422.5 56 88218.0 57 72115.0 58 56012.0 59 49398.5 60 42785.0 61 42785.0 62 37580.5 63 32376.0 64 28278.5 65 24181.0 66 20680.0 67 17179.0 68 17179.0 69 14591.0 70 12003.0 71 10122.0 72 8241.0 73 6690.0 74 5139.0 75 5139.0 76 4155.5 77 3172.0 78 2438.5 79 1705.0 80 1337.0 81 969.0 82 969.0 83 724.0 84 479.0 85 364.0 86 249.0 87 173.5 88 98.0 89 98.0 90 79.0 91 60.0 92 43.5 93 27.0 94 21.5 95 16.0 96 16.0 97 10.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1538993.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.04532059917758 #Duplication Level Percentage of deduplicated Percentage of total 1 81.8416862941578 40.957934289684445 2 10.331178788081901 10.340543092339633 3 3.1006668152226133 4.655215945171398 4 1.386562087453846 2.7756377678917055 5 0.7389907390746597 1.8491514228407266 6 0.4883750230270015 1.4664530760010213 7 0.32865679645172446 1.1513414321867639 8 0.2515537642724246 1.0071271024754744 9 0.2039799169681274 0.9187416306417201 >10 1.158448703892163 10.869647273804912 >50 0.09921772206742181 3.3765005417591065 >100 0.05730034781025661 5.540074417656564 >500 0.005846942411700082 2.0975086116050967 >1k 0.006236738572480088 5.527377686110911 >5k 9.09524375153346E-4 3.0692409082175085 >10k+ 3.897961607800055E-4 4.397504801612968 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 25319 1.645166677171371 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23203 1.5076741739566069 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19106 1.241461137250137 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9064 0.588956544961543 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 7446 0.4838228633918413 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7001 0.4549078520824981 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6524 0.42391355906102235 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6096 0.3961031661612496 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5813 0.3777145185195774 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5257 0.34158699877127446 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3903 0.2536073913266662 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3411 0.22163843500262836 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3366 0.21871444509494195 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3318 0.21559552252674313 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2700 0.17543939446118337 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2654 0.17245042699999286 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2562 0.16647249207761178 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2364 0.15360693648379167 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2298 0.1493184179525183 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2261 0.14691424847286505 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2238 0.14541976474226978 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2227 0.1447050116537242 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2208 0.14347043813714552 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2207 0.14340546058364137 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2174 0.1412612013180047 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2019 0.13118968052486268 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 1979 0.128590578384697 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACTGT 1927 0.12521174560248163 No Hit AGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGATACCTG 1772 0.11514022480933962 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTG 1721 0.11182636958062836 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAAAAAAAAA 1635 0.10623829997927217 No Hit CCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTG 1612 0.1047438162486769 No Hit TCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGAT 1593 0.1035092427320982 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCT 1583 0.10285946719705678 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 6.4977553504142E-5 0.0 0.0 0.0 0.0 7 6.4977553504142E-5 0.0 0.0 0.0 0.0 8 6.4977553504142E-5 0.0 0.0 0.0 0.0 9 6.4977553504142E-5 0.0 0.0 6.4977553504142E-5 0.0 10 6.4977553504142E-5 0.0 0.0 2.59910214016568E-4 0.0 11 6.4977553504142E-5 0.0 0.0 5.84797981537278E-4 0.0 12 6.4977553504142E-5 0.0 0.0 9.096857490579879E-4 0.0 13 6.4977553504142E-5 0.0 0.0 0.001169595963074556 0.0 14 6.4977553504142E-5 0.0 0.0 0.0013645286235869818 0.0 15 6.4977553504142E-5 0.0 0.0 0.0017543939446118338 0.0 16 6.4977553504142E-5 0.0 0.0 0.0030539450146946736 0.0 17 6.4977553504142E-5 0.0 0.0 0.004743361405802365 0.0 18 6.4977553504142E-5 0.0 0.0 0.0055880696013562116 0.0 19 6.4977553504142E-5 0.0 0.0 0.006757665564430767 0.0 20 6.4977553504142E-5 0.0 0.0 0.011241116756216566 0.0 21 6.4977553504142E-5 0.0 0.0 0.021507570209871 0.0 22 6.4977553504142E-5 0.0 0.0 0.03677729528334437 0.0 23 6.4977553504142E-5 0.0 0.0 0.045224377238882826 0.0 24 6.4977553504142E-5 0.0 0.0 0.05588069601356212 0.0 25 6.4977553504142E-5 0.0 0.0 0.06296324934551359 0.0 26 6.4977553504142E-5 0.0 0.0 0.07569884983232543 0.0 27 6.4977553504142E-5 0.0 0.0 0.14671931581235262 0.0 28 6.4977553504142E-5 0.0 0.0 0.29454325003427567 0.0 29 6.4977553504142E-5 0.0 0.0 0.49012568608174306 0.0 30 6.4977553504142E-5 0.0 0.0 0.7961699630862519 0.0 31 6.4977553504142E-5 0.0 0.0 1.131129251400104 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6545 0.0 26.796026 1 TTAGACG 50 2.7026792E-4 22.2 15 TAGACGT 60 3.727342E-5 21.583334 16 TATACCG 70 5.1037787E-6 21.142857 5 GTATTGG 650 0.0 18.784616 1 ATTGGAC 650 0.0 18.500002 3 CGACGAG 70 1.21953824E-4 18.5 24 TACACCG 120 5.176844E-9 18.5 5 TATACTG 155 2.1827873E-11 17.903225 5 TGGACCC 955 0.0 16.853403 5 GTATCAA 10420 0.0 16.848848 2 TTGGACC 930 0.0 16.510752 4 TAATACT 225 0.0 16.444445 4 ATACGGA 90 4.447531E-5 16.444445 29 ACCGTGA 115 1.2427881E-6 16.086956 8 GTTCTAA 140 3.4751793E-8 15.857142 1 GGACCCT 985 0.0 15.77665 6 ATACTGG 165 9.749783E-10 15.69697 6 TATTGGA 780 0.0 15.653847 2 CTAATAC 190 2.7284841E-11 15.578948 3 >>END_MODULE