##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088679_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2105345 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.618102971246994 31.0 31.0 34.0 30.0 34.0 2 31.833549845749747 31.0 31.0 34.0 30.0 34.0 3 31.909881753346838 31.0 31.0 34.0 30.0 34.0 4 35.62583757056444 37.0 35.0 37.0 33.0 37.0 5 35.50468165550064 37.0 35.0 37.0 33.0 37.0 6 35.54964150768639 37.0 35.0 37.0 33.0 37.0 7 35.410630086755376 37.0 35.0 37.0 33.0 37.0 8 35.43593567800052 37.0 35.0 37.0 33.0 37.0 9 37.039989645402535 39.0 37.0 39.0 33.0 39.0 10 36.85941829011397 39.0 37.0 39.0 32.0 39.0 11 36.94916890105897 39.0 37.0 39.0 33.0 39.0 12 36.805229071719836 39.0 37.0 39.0 32.0 39.0 13 36.8400960412664 39.0 37.0 39.0 32.0 39.0 14 37.82731476313858 40.0 37.0 41.0 32.0 41.0 15 37.84189812121054 40.0 37.0 41.0 32.0 41.0 16 37.73987066252799 40.0 37.0 41.0 32.0 41.0 17 37.764641899546156 39.0 37.0 41.0 32.0 41.0 18 37.72455535791046 39.0 37.0 41.0 32.0 41.0 19 37.75990158382593 40.0 37.0 41.0 32.0 41.0 20 37.64157750867435 39.0 37.0 41.0 32.0 41.0 21 37.572295277021105 39.0 37.0 41.0 32.0 41.0 22 37.448776328820216 39.0 36.0 41.0 32.0 41.0 23 37.26391731521437 39.0 36.0 41.0 31.0 41.0 24 37.110427032149126 39.0 36.0 41.0 31.0 41.0 25 37.30239271948303 39.0 36.0 41.0 31.0 41.0 26 37.18309730709219 39.0 36.0 41.0 31.0 41.0 27 37.075588086513136 39.0 36.0 41.0 31.0 41.0 28 36.901391458407055 39.0 35.0 41.0 30.0 41.0 29 36.790444321477004 39.0 35.0 41.0 30.0 41.0 30 36.596344542105925 39.0 35.0 40.0 30.0 41.0 31 36.44022998605929 39.0 35.0 40.0 30.0 41.0 32 36.26544010601588 38.0 35.0 40.0 30.0 41.0 33 36.1219652835996 38.0 35.0 40.0 30.0 41.0 34 35.94326203068856 38.0 35.0 40.0 29.0 41.0 35 35.812576086104656 38.0 35.0 40.0 28.0 41.0 36 35.62010501841741 38.0 35.0 40.0 27.0 41.0 37 35.545378548408934 38.0 34.0 40.0 26.0 41.0 38 35.367396317468156 38.0 34.0 40.0 26.0 41.0 39 35.267153364412955 38.0 34.0 40.0 25.0 41.0 40 35.10099104897297 38.0 34.0 40.0 24.0 41.0 41 34.960944168295455 38.0 34.0 40.0 24.0 41.0 42 34.70490252191446 38.0 33.0 40.0 23.0 41.0 43 34.3473231228136 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 2.0 13 0.0 14 3.0 15 13.0 16 24.0 17 69.0 18 151.0 19 327.0 20 719.0 21 1505.0 22 2844.0 23 4814.0 24 7965.0 25 12083.0 26 17529.0 27 24648.0 28 33536.0 29 43872.0 30 56062.0 31 69486.0 32 86242.0 33 106646.0 34 131783.0 35 163555.0 36 210309.0 37 289812.0 38 389807.0 39 451539.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.28097770199183 21.06039627709473 14.02093243625154 23.637693584661896 2 19.040157313884425 23.193965834578183 34.741669417601386 23.024207433936006 3 19.616072425184473 24.041712878411854 32.888908943664816 23.453305752738864 4 13.971391862141358 16.337037397671168 35.863718297951166 33.827852442236306 5 12.860552546019774 38.21064956099832 34.88953116947579 14.039266723506124 6 32.617172007438214 36.943018840142585 13.68141563496719 16.758393517452006 7 26.09486806200409 33.086406265956406 21.337832991742445 19.480892680297053 8 27.147902125304878 34.17976626158658 19.03968233234933 19.63264928075921 9 24.651161686089456 14.519568051791987 21.733730101242312 39.09554016087625 10 16.413176937746545 27.716407524657477 33.54766083468505 22.322754702910924 11 33.314397402800964 22.45536954750884 23.460620468379293 20.769612581310902 12 21.02230275798028 27.055613213036345 30.87484474041072 21.047239288572655 13 31.634720200252215 21.080250505261606 26.045707473121983 21.239321821364193 14 20.56598799721661 23.02805478437026 27.649007644827805 28.756949573585327 15 22.76315758224899 29.798584080043888 25.089237155905565 22.349021181801557 16 22.09519104944795 28.314266782878818 26.42336529167429 23.167176875998948 17 21.7884004759315 27.086297020203336 26.831469426626043 24.29383307723912 18 23.173351635955154 25.88297879919918 29.149854299414113 21.793815265431558 19 22.79156147804754 25.153169670529056 30.39202600998886 21.66324284143454 20 23.842030641058827 24.771617003388993 29.946493330071792 21.439859025480384 21 22.643842220633672 25.543699488682375 30.601730357732343 21.210727932951606 22 21.350609995036443 25.89836820093619 30.19562114522798 22.55540065879939 23 22.414188648416292 25.99402948210388 30.82611163491019 20.76567023456963 24 22.216263842743114 26.01421619734533 28.828481792770305 22.941038167141254 25 22.248705081589954 26.345848305147136 29.867456402632346 21.53799021063056 26 21.864112532625292 27.069672666475093 29.681501131643508 21.384713669256108 27 20.845609626925754 27.065872814194346 29.484193801965947 22.60432375691395 28 21.408415247857242 26.672968088365568 29.458639795377955 22.45997686839924 29 21.55081471207807 26.55873502917574 29.017524443737248 22.87292581500894 30 21.813337006523874 26.82424970729263 30.37435669688341 20.98805658930009 31 22.610641011330685 26.494470027477686 30.068231097516083 20.82665786367555 32 22.11195789763673 26.412963196055756 29.24964791993711 22.225430986370405 33 21.6548356682634 26.42175035445497 29.859904196224374 22.06350978105726 34 20.882753182970013 26.79104849798964 30.496949431090865 21.829248887949483 35 20.52342965167229 28.541925432648807 29.49545086434765 21.439194051331253 36 22.502725206557596 26.412773203441713 29.437455618912818 21.647045971087874 37 21.68319206590844 27.01200990811482 29.472651750663193 21.832146275313548 38 21.45410847153317 25.82151618855817 30.672977587996265 22.051397751912393 39 21.034604779739187 25.49069154936602 31.44073774132031 22.033965929574485 40 19.98793546900864 25.864217028563015 31.20961172634414 22.938235776084205 41 21.199328376109378 25.052806072163946 31.202581999624762 22.54528355210191 42 20.068919820741968 26.802495552985377 30.606527671236783 22.522056955035875 43 20.255207578805372 26.70246444169483 30.07915567282322 22.963172306676576 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 636.0 1 621.5 2 607.0 3 1072.0 4 1537.0 5 1537.0 6 2360.5 7 3184.0 8 3521.0 9 3858.0 10 5965.0 11 8072.0 12 8072.0 13 15278.5 14 22485.0 15 35358.0 16 48231.0 17 44914.5 18 41598.0 19 41598.0 20 45200.0 21 48802.0 22 40047.0 23 31292.0 24 35219.0 25 39146.0 26 39146.0 27 43009.5 28 46873.0 29 49796.5 30 52720.0 31 58126.0 32 63532.0 33 63532.0 34 70323.5 35 77115.0 36 84063.5 37 91012.0 38 96063.0 39 101114.0 40 101114.0 41 106101.0 42 111088.0 43 117612.5 44 124137.0 45 132947.0 46 141757.0 47 141757.0 48 181025.0 49 220293.0 50 205431.5 51 190570.0 52 173280.0 53 155990.0 54 155990.0 55 139737.0 56 123484.0 57 107692.5 58 91901.0 59 82581.0 60 73261.0 61 73261.0 62 65280.5 63 57300.0 64 50320.0 65 43340.0 66 36921.0 67 30502.0 68 30502.0 69 26275.0 70 22048.0 71 18596.0 72 15144.0 73 12379.0 74 9614.0 75 9614.0 76 7712.0 77 5810.0 78 4516.0 79 3222.0 80 2595.0 81 1968.0 82 1968.0 83 1491.0 84 1014.0 85 783.0 86 552.0 87 425.0 88 298.0 89 298.0 90 219.5 91 141.0 92 101.0 93 61.0 94 44.5 95 28.0 96 28.0 97 17.5 98 7.0 99 4.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2105345.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.152468794486666 #Duplication Level Percentage of deduplicated Percentage of total 1 78.4457666725606 38.558030984326166 2 11.755313675700238 11.556053772285166 3 3.8456996867907143 5.670769015438433 4 1.7172812332238152 3.3763444890956467 5 0.9643510447704546 2.370011731750519 6 0.6260632262217746 1.8463531914144848 7 0.4120628068711647 1.4177732979272457 8 0.2961316381473349 1.1644480882477677 9 0.2481360706464597 1.0976850422312983 >10 1.4933407615726884 13.563035660797826 >50 0.12307960708725588 4.1625041230386985 >100 0.06348518929613672 5.738263141912922 >500 0.004644193555658503 1.6456147183146994 >1k 0.0038701612963820855 3.4438873924653146 >5k 4.837701620477607E-4 1.453246671163211 >10k+ 2.902620972286564E-4 2.9359786795906797 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23436 1.1131667256435405 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21489 1.0206878207609678 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16811 0.7984914586445452 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8561 0.40663169219296597 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5981 0.2840864561390176 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5678 0.269694515625705 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5270 0.25031526899391787 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5068 0.2407206419850428 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4591 0.21806402276111514 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4024 0.1911325697213521 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3294 0.15645891765957598 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3134 0.1488592130980908 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2876 0.13660468949269597 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2726 0.12947996646630364 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2491 0.11831790039162227 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2236 0.10620587124675529 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2207 0.1048284247949861 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2180 0.10354597465023548 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.7498153509282324E-5 0.0 2 0.0 0.0 0.0 4.7498153509282324E-5 0.0 3 0.0 0.0 0.0 4.7498153509282324E-5 0.0 4 0.0 0.0 0.0 4.7498153509282324E-5 0.0 5 0.0 0.0 0.0 4.7498153509282324E-5 0.0 6 9.499630701856465E-5 0.0 0.0 4.7498153509282324E-5 0.0 7 9.499630701856465E-5 0.0 0.0 4.7498153509282324E-5 0.0 8 9.499630701856465E-5 0.0 0.0 4.7498153509282324E-5 0.0 9 9.499630701856465E-5 0.0 0.0 9.499630701856465E-5 0.0 10 9.499630701856465E-5 0.0 0.0 9.499630701856465E-5 0.0 11 9.499630701856465E-5 0.0 0.0 1.4249446052784699E-4 0.0 12 9.499630701856465E-5 0.0 0.0 2.8498892105569397E-4 0.0 13 9.499630701856465E-5 0.0 0.0 2.8498892105569397E-4 0.0 14 9.499630701856465E-5 0.0 0.0 3.324870745649763E-4 0.0 15 9.499630701856465E-5 0.0 0.0 5.224796886021056E-4 0.0 16 9.499630701856465E-5 0.0 0.0 0.0010449593772042113 0.0 17 9.499630701856465E-5 0.0 0.0 0.0015199409122970344 0.0 18 9.499630701856465E-5 0.0 0.0 0.0018049298333527284 0.0 19 9.499630701856465E-5 0.0 0.0 0.0023749076754641164 0.0 20 1.4249446052784699E-4 0.0 0.0 0.0037523541272333036 0.0 21 1.4249446052784699E-4 0.0 0.0 0.007219719333410914 0.0 22 1.4249446052784699E-4 0.0 0.0 0.011114567921172065 0.0 23 1.4249446052784699E-4 0.0 0.0 0.013869460824710439 0.0 24 1.899926140371293E-4 0.0 0.0 0.01861927617563867 0.0 25 2.3749076754641163E-4 0.0 0.0 0.022894109991474083 0.0 26 2.3749076754641163E-4 0.0 0.0 0.030683807166996382 0.0 27 2.3749076754641163E-4 0.0 0.0 0.0930013845711748 0.0 28 2.3749076754641163E-4 0.0 0.0 0.21136678311630636 0.0 29 2.3749076754641163E-4 0.0 0.0 0.36492831341181614 0.0 30 2.3749076754641163E-4 0.0 0.0 0.576722579909706 0.0 31 2.3749076754641163E-4 0.0 0.0 0.8250904246097432 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6250 0.0 24.42 1 TGTTACG 70 5.1052484E-6 21.142859 16 ATTGGAC 645 0.0 18.643412 3 CGCGAAT 50 0.0070367786 18.5 35 TATACCG 145 1.546141E-10 17.862068 5 GACCGTT 115 6.412483E-8 17.695652 7 CCGTTTA 115 6.412483E-8 17.695652 27 CAATGCG 95 3.6092715E-6 17.526316 19 GTATTGG 670 0.0 17.395523 1 TATACTG 265 0.0 16.754717 5 AAGACCG 180 1.0913936E-11 16.444445 5 GTATCAA 9785 0.0 15.560041 2 TTGGACC 1070 0.0 14.86916 4 CGACGAG 150 8.110692E-8 14.8 24 CGTTATT 100 1.09405E-4 14.8 10 GGACCGT 150 8.110692E-8 14.8 6 TACCGAC 325 0.0 14.8 7 GTATTAG 355 0.0 14.591549 1 ACGTTTA 205 9.276846E-11 14.439024 26 ACCGTTA 130 4.4479E-6 14.230769 8 >>END_MODULE