##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088673_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1763174 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.609750370638405 31.0 31.0 34.0 30.0 34.0 2 31.8212677818525 31.0 31.0 34.0 30.0 34.0 3 31.899108652917977 31.0 31.0 34.0 30.0 34.0 4 35.61408006243286 37.0 35.0 37.0 33.0 37.0 5 35.4975992159594 37.0 35.0 37.0 33.0 37.0 6 35.54377957025228 37.0 35.0 37.0 33.0 37.0 7 35.41103487233818 37.0 35.0 37.0 33.0 37.0 8 35.430707916518735 37.0 35.0 37.0 33.0 37.0 9 37.0388974655933 39.0 37.0 39.0 33.0 39.0 10 36.85165559383248 39.0 37.0 39.0 32.0 39.0 11 36.946825440937765 39.0 37.0 39.0 33.0 39.0 12 36.797706295578315 39.0 37.0 39.0 32.0 39.0 13 36.833221224904634 39.0 37.0 39.0 32.0 39.0 14 37.8216438082685 40.0 37.0 41.0 32.0 41.0 15 37.83250603740754 40.0 37.0 41.0 32.0 41.0 16 37.72708706004059 39.0 37.0 41.0 32.0 41.0 17 37.75240617205109 39.0 37.0 41.0 32.0 41.0 18 37.71386091219585 39.0 37.0 41.0 32.0 41.0 19 37.76113304756082 40.0 37.0 41.0 32.0 41.0 20 37.64742731006696 39.0 37.0 41.0 32.0 41.0 21 37.57938411070036 39.0 37.0 41.0 32.0 41.0 22 37.44168414461647 39.0 36.0 41.0 32.0 41.0 23 37.269384076670825 39.0 36.0 41.0 31.0 41.0 24 37.12756199898592 39.0 36.0 41.0 31.0 41.0 25 37.31004483959042 39.0 36.0 41.0 31.0 41.0 26 37.19779670072268 39.0 36.0 41.0 31.0 41.0 27 37.09819393888522 39.0 36.0 41.0 31.0 41.0 28 36.939116048671316 39.0 36.0 41.0 30.0 41.0 29 36.836888474988854 39.0 35.0 41.0 30.0 41.0 30 36.64463235052241 39.0 35.0 40.0 30.0 41.0 31 36.50587576722433 39.0 35.0 40.0 30.0 41.0 32 36.33674044649025 38.0 35.0 40.0 30.0 41.0 33 36.20164203873242 38.0 35.0 40.0 30.0 41.0 34 36.02449843293969 38.0 35.0 40.0 29.0 41.0 35 35.884821917746066 38.0 35.0 40.0 29.0 41.0 36 35.71356598951663 38.0 35.0 40.0 27.0 41.0 37 35.64246637030718 38.0 35.0 40.0 27.0 41.0 38 35.46872174839239 38.0 34.0 40.0 26.0 41.0 39 35.38123009980864 38.0 34.0 40.0 26.0 41.0 40 35.22163949786011 38.0 34.0 40.0 25.0 41.0 41 35.082388351915355 38.0 34.0 40.0 24.0 41.0 42 34.83136774929758 38.0 33.0 40.0 24.0 41.0 43 34.48468160260984 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 2.0 14 2.0 15 8.0 16 16.0 17 49.0 18 110.0 19 238.0 20 547.0 21 1179.0 22 2225.0 23 3890.0 24 6255.0 25 9631.0 26 14367.0 27 20040.0 28 27279.0 29 35897.0 30 46299.0 31 57670.0 32 71542.0 33 88973.0 34 109801.0 35 136914.0 36 177634.0 37 245170.0 38 331195.0 39 376240.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.39886364023063 21.120377228793075 13.732450682689286 23.74830844828701 2 18.8850334680525 23.224310249583986 34.87506054422309 23.01559573814042 3 19.509985968486376 24.429806700870135 32.82069721990002 23.239510110743467 4 13.59241912596261 16.413014257242903 36.583627027168056 33.41093958962644 5 12.80242335696874 38.22850155458282 35.242409427543734 13.726665660904711 6 32.32477339162215 37.262062621159345 13.954323282897773 16.458840704320732 7 26.23722899725155 32.835500069760556 21.627927816539945 19.29934311644795 8 26.93778379218387 34.24636479439919 19.188747111742803 19.62710430167414 9 24.69574755526114 14.258093642487923 21.69689435075608 39.34926445149486 10 16.19857143991461 27.61962234016609 34.04207412314383 22.139732096775475 11 33.372883220827894 22.451839693643397 23.441759009604272 20.73351807592444 12 21.16711113026848 26.98860123844839 30.916007155277924 20.928280476005202 13 31.461387248223943 20.96990994649422 26.00928779575924 21.5594150095226 14 20.671981324588497 22.82089005395951 27.668965173034536 28.838163448417458 15 22.994327275697124 29.543198799437832 25.134671904190963 22.327802020674078 16 22.11063684015304 28.17974856707279 26.54808884432279 23.16152574845137 17 21.849176541850095 26.941016598475247 26.971926763892846 24.23788009578181 18 22.903014676940565 25.811519452986488 29.282816103232012 22.002649766840936 19 22.79729623962241 25.04687569122503 30.348337713691333 21.80749035546123 20 23.705034216702376 24.774015497052474 29.987511158853298 21.53343912739185 21 22.693335995199565 25.53888612241333 30.4345458814615 21.3332320009256 22 21.562817963513528 25.890864996874953 30.04933148968848 22.49698554992304 23 22.435618946286638 26.003729637574057 30.74863853482413 20.812012881315173 24 22.30284702474061 26.059254503526024 28.693311040203636 22.94458743152973 25 22.336366121551247 26.178528040908045 29.782256317300504 21.702849520240203 26 21.925516143046575 26.85582931690236 29.660657428024688 21.55799711202638 27 21.03394219742351 26.90250650247792 29.438841543716048 22.624709756382526 28 21.49680065608953 26.60956887975889 29.5117781909216 22.38185227322998 29 21.738637253044793 26.61790611703666 28.93639538695557 22.707061242962975 30 21.749469989915912 26.844259273333204 30.362573404553377 21.043697332197503 31 22.481842404663407 26.564139443980007 29.98076196677129 20.9732561845853 32 21.948202502986092 26.51672495170641 29.201769082348083 22.333303462959414 33 21.59531617412689 26.51899358770036 29.853491487510592 22.032198750662157 34 21.01885576806373 27.00890553059426 30.444301016235492 21.52793768510652 35 20.730001690133815 28.874915351519476 29.243285121037406 21.151797837309307 36 22.58636980808474 26.990699726742797 29.039561608780527 21.38336885639194 37 21.738467105345247 27.58610324335545 29.121232504562794 21.554197146736513 38 21.52141535662391 26.506686237433176 30.087047563087932 21.884850842854988 39 21.19314372829908 26.28566437572242 30.724874572787485 21.796317323191015 40 20.304462293568303 26.787543373484407 30.421614656295976 22.48637967665131 41 21.670634889126088 25.786734604752564 30.364104733849295 22.17852577227205 42 20.375470600178996 27.507778585664262 29.874533086354493 22.242217727802245 43 20.799365235648892 27.235428834590348 29.19161693627515 22.77358899348561 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 593.0 1 503.5 2 414.0 3 784.5 4 1155.0 5 1155.0 6 1874.0 7 2593.0 8 2749.0 9 2905.0 10 4623.5 11 6342.0 12 6342.0 13 11794.5 14 17247.0 15 27638.5 16 38030.0 17 35630.0 18 33230.0 19 33230.0 20 36098.5 21 38967.0 22 31948.0 23 24929.0 24 28303.5 25 31678.0 26 31678.0 27 35725.5 28 39773.0 29 43603.5 30 47434.0 31 52447.5 32 57461.0 33 57461.0 34 63889.0 35 70317.0 36 76736.5 37 83156.0 38 86619.0 39 90082.0 40 90082.0 41 92808.5 42 95535.0 43 100236.5 44 104938.0 45 110365.5 46 115793.0 47 115793.0 48 144911.0 49 174029.0 50 164299.0 51 154569.0 52 141526.5 53 128484.0 54 128484.0 55 116386.5 56 104289.0 57 90737.5 58 77186.0 59 69735.0 60 62284.0 61 62284.0 62 55202.0 63 48120.0 64 41992.5 65 35865.0 66 30822.0 67 25779.0 68 25779.0 69 22006.0 70 18233.0 71 15490.5 72 12748.0 73 10483.0 74 8218.0 75 8218.0 76 6602.5 77 4987.0 78 3848.5 79 2710.0 80 2112.0 81 1514.0 82 1514.0 83 1157.0 84 800.0 85 586.0 86 372.0 87 291.0 88 210.0 89 210.0 90 164.0 91 118.0 92 85.0 93 52.0 94 38.0 95 24.0 96 24.0 97 16.5 98 9.0 99 5.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1763174.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.381044775822495 #Duplication Level Percentage of deduplicated Percentage of total 1 81.28572190964539 44.20402482803482 2 10.907405700083281 11.863122355285807 3 3.251364625916219 5.3043781591342585 4 1.3728680858427391 2.9863200339004687 5 0.752769147959887 2.046818637053218 6 0.46181542999959924 1.5068403346184354 7 0.29513639163408406 1.1234877729899466 8 0.22645144900164588 0.985173311016671 9 0.179912750971546 0.880545902969254 >10 1.1093302720570088 11.44873863137004 >50 0.09459975708969481 3.5507524882076105 >100 0.054483746466878785 5.49594902020157 >500 0.004279103418096531 1.6456012463729544 >1k 0.0033397880336363166 3.4137967775001887 >5k 2.087367521022698E-4 0.6723388412959239 >10k+ 3.131051281534047E-4 2.872111660048872 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 19254 1.0920079356887067 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 17512 0.9932088381521053 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13838 0.7848346221076309 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6809 0.38617856207044793 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5037 0.28567798753838247 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4390 0.24898280033621187 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4277 0.24257390365329798 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3962 0.22470839520092745 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3491 0.1979952063721448 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3479 0.19731461557395924 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2572 0.1458732944111018 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2350 0.13328236464466922 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2330 0.1321480466476933 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2210 0.12534213866583785 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1971 0.11178703860197575 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1804 0.10231548332722692 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 5.6715899848795414E-5 0.0 0.0 0.0 0.0 13 5.6715899848795414E-5 0.0 0.0 5.6715899848795414E-5 0.0 14 1.1343179969759083E-4 0.0 0.0 2.8357949924397705E-4 0.0 15 1.1343179969759083E-4 0.0 0.0 2.8357949924397705E-4 0.0 16 1.1343179969759083E-4 0.0 0.0 6.238748983367496E-4 0.0 17 1.1343179969759083E-4 0.0 0.0 0.0010776020971271128 0.0 18 1.1343179969759083E-4 0.0 0.0 0.0013044656965222944 0.0 19 1.1343179969759083E-4 0.0 0.0 0.0018149087951614532 0.0 20 1.1343179969759083E-4 0.0 0.0 0.003346238091078929 0.0 21 1.1343179969759083E-4 0.0 0.0 0.005841737684425927 0.0 22 1.1343179969759083E-4 0.0 0.0 0.009414839374900038 0.0 23 1.1343179969759083E-4 0.0 0.0 0.011343179969759082 0.0 24 1.1343179969759083E-4 0.0 0.0 0.013781963663257285 0.0 25 1.1343179969759083E-4 0.0 0.0 0.01678790635524344 0.0 26 1.1343179969759083E-4 0.0 0.0 0.02115503064360069 0.0 27 1.1343179969759083E-4 0.0 0.0 0.051101025763764664 0.0 28 1.1343179969759083E-4 0.0 0.0 0.1223361959738517 0.0 29 1.1343179969759083E-4 0.0 0.0 0.2286217922904943 0.0 30 1.1343179969759083E-4 0.0 0.0 0.36973095111429727 0.0 31 1.1343179969759083E-4 0.0 0.0 0.5247355054010552 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5335 0.0 23.337395 1 TATTCCG 65 6.904805E-5 19.923077 5 GTATTGG 625 0.0 19.536 1 ATTGGAC 620 0.0 19.096775 3 TTGGACC 840 0.0 18.500002 4 ATAGGAC 130 6.9667294E-10 18.5 3 GCGTAGA 50 0.0070363386 18.499998 1 TATACCG 105 4.800859E-7 17.61905 5 GGACCCT 865 0.0 17.53757 6 ATCGCGT 75 2.068055E-4 17.266666 22 TGGACCC 930 0.0 16.311829 5 GACCCTC 855 0.0 16.22807 7 ACGTTTA 115 1.2430392E-6 16.086956 26 TAAGGTC 225 0.0 15.622222 5 CGCACTA 110 1.452664E-5 15.136364 29 ACTTAGC 185 3.0559022E-10 15.0 8 TATTGGA 780 0.0 14.942308 2 CGCGTAT 75 0.0041055614 14.8 24 GTATCAA 8430 0.0 14.747331 2 TCACGTT 140 5.999573E-7 14.535714 24 >>END_MODULE