##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088671_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2601051 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.570545906250974 31.0 31.0 34.0 30.0 34.0 2 31.779045086005617 31.0 31.0 34.0 30.0 34.0 3 31.86126723389891 31.0 31.0 34.0 30.0 34.0 4 35.57595372024616 37.0 35.0 37.0 33.0 37.0 5 35.44986353593221 37.0 35.0 37.0 33.0 37.0 6 35.4949718402292 37.0 35.0 37.0 33.0 37.0 7 35.3594189425736 37.0 35.0 37.0 33.0 37.0 8 35.381724156888886 37.0 35.0 37.0 33.0 37.0 9 36.98252936985857 39.0 37.0 39.0 33.0 39.0 10 36.79271263808361 39.0 37.0 39.0 32.0 39.0 11 36.88303343533057 39.0 37.0 39.0 33.0 39.0 12 36.74019617454637 39.0 35.0 39.0 32.0 39.0 13 36.77476297081449 39.0 37.0 39.0 32.0 39.0 14 37.77653071777524 40.0 37.0 41.0 32.0 41.0 15 37.787179874596845 40.0 37.0 41.0 32.0 41.0 16 37.67748575479681 39.0 37.0 41.0 32.0 41.0 17 37.689715426571794 39.0 37.0 41.0 32.0 41.0 18 37.64110392299113 39.0 37.0 41.0 32.0 41.0 19 37.68763011567247 40.0 37.0 41.0 32.0 41.0 20 37.55784065748807 39.0 36.0 41.0 32.0 41.0 21 37.49444013208507 39.0 36.0 41.0 32.0 41.0 22 37.36276951124757 39.0 36.0 41.0 31.0 41.0 23 37.18589754679935 39.0 36.0 41.0 31.0 41.0 24 37.027756087827576 39.0 36.0 41.0 31.0 41.0 25 37.22113599464217 39.0 36.0 41.0 31.0 41.0 26 37.10632471258734 39.0 36.0 41.0 31.0 41.0 27 36.99588512489759 39.0 36.0 41.0 31.0 41.0 28 36.83085875671027 39.0 35.0 41.0 30.0 41.0 29 36.72060870778774 39.0 35.0 41.0 30.0 41.0 30 36.53136866597387 39.0 35.0 40.0 30.0 41.0 31 36.39447169624894 39.0 35.0 40.0 30.0 41.0 32 36.22266768317884 38.0 35.0 40.0 30.0 41.0 33 36.09394740818231 38.0 35.0 40.0 29.0 41.0 34 35.91515891076338 38.0 35.0 40.0 29.0 41.0 35 35.78898145403531 38.0 35.0 40.0 28.0 41.0 36 35.603056995037775 38.0 34.0 40.0 27.0 41.0 37 35.545048905231 38.0 34.0 40.0 26.0 41.0 38 35.36364531106849 38.0 34.0 40.0 25.0 41.0 39 35.28415859589066 38.0 34.0 40.0 25.0 41.0 40 35.13981156078831 38.0 34.0 40.0 24.0 41.0 41 35.01580860967355 38.0 34.0 40.0 24.0 41.0 42 34.77753377384757 38.0 33.0 40.0 23.0 41.0 43 34.43108035943932 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 3.0 14 7.0 15 13.0 16 33.0 17 94.0 18 182.0 19 428.0 20 918.0 21 1940.0 22 3696.0 23 6383.0 24 10273.0 25 15697.0 26 22930.0 27 31947.0 28 42820.0 29 55761.0 30 71032.0 31 87605.0 32 107847.0 33 132596.0 34 163061.0 35 200763.0 36 255981.0 37 351645.0 38 484604.0 39 552790.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.34797818266539 21.37520563802863 13.595927184818752 23.68088899448723 2 18.95814422708359 23.26847878030842 34.70301043693492 23.070366555673072 3 19.696730283258574 24.631889186332756 32.27237758890541 23.399002941503262 4 13.86539518064044 16.50705810843386 36.467335703913534 33.160211007012165 5 12.872335067632276 38.48863401755675 35.04333440597666 13.595696508834312 6 32.44361606135366 37.50729993375755 14.068197816959374 15.98088618792942 7 26.250542569138396 32.81458149032833 21.906606214180343 19.028269726352924 8 26.751763037326064 34.58121351715134 19.394736973631044 19.272286471891555 9 24.765835041296768 14.523936670215232 21.704918511786197 39.0053097767018 10 16.15416229824021 27.755741813597655 34.072572971464226 22.017522916697903 11 33.28542962056492 22.634158269099682 23.437448938909693 20.642963171425706 12 20.734579983245236 27.142720384952085 31.196351013494162 20.92634861830852 13 30.786478235144177 21.20865757726396 26.14454695428886 21.860317233303 14 20.459037519833327 22.889593475868026 27.78115461788331 28.870214386415338 15 22.890439287810967 29.620180457822627 25.28846993003982 22.20091032432659 16 22.015485278835364 28.474528181108326 26.494328638692586 23.015657901363717 17 21.588888491613584 27.23525990070937 27.21853589183757 23.95731571583948 18 22.608168774852935 26.217094551394805 29.268476473548578 21.906260200203686 19 22.611590468622104 25.493502434208327 30.26638078222995 21.628526314939613 20 23.421301619998992 25.295620885557412 29.932784862734334 21.35029263170926 21 22.350273024250583 26.103640413048417 30.310901247226603 21.235185315474396 22 21.500347359586566 26.364573397445877 29.89422352733568 22.240855715631874 23 22.171845150287325 26.468377590443247 30.504553736162805 20.855223523106623 24 22.19541254669747 26.588021534372068 28.655224368918564 22.5613415500119 25 22.233089624155774 26.63742464103933 29.578812564613305 21.550673170191587 26 21.88638361954456 27.268361904476308 29.472278705800083 21.372975770179053 27 21.078594768038 27.2444100480921 29.326799051614138 22.35019613225577 28 21.465438393941525 26.877250772860663 29.56797079334469 22.08934003985312 29 21.763587103828414 26.773523471858105 29.109771396254825 22.353118028058656 30 21.801840871247816 27.093394170279627 30.12040133007773 20.98436362839483 31 22.405904382497692 26.85302979449461 29.901451374848094 20.83961444815961 32 21.794420793748372 26.71420129785998 29.317956472210653 22.17342143618099 33 21.476587733189394 26.714047513870355 29.79853143979107 22.010833313149185 34 21.011237380581925 26.94637667619743 30.31736017479088 21.725025768429763 35 20.822429087318934 28.388447592915327 29.34348461448853 21.44563870527721 36 22.41097925415534 26.765642042389786 29.196082660432264 21.62729604302261 37 21.5657055551775 26.98117030385025 29.43344824841958 22.019675892552666 38 21.373129554168678 26.08676262018699 30.361227057831623 22.178880767812704 39 20.88659545699027 25.896608717014775 31.10211987385099 22.114675952143962 40 20.191222701900116 26.370609419038686 30.819541792913714 22.618626086147483 41 21.16356042230621 25.443868651556624 30.87336618928272 22.519204736854448 42 20.06365888250557 26.944262146340076 30.445385346154303 22.546693625000046 43 20.403444607583626 26.596941005770358 29.976613299777664 23.023001086868348 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 978.0 1 887.0 2 796.0 3 1357.0 4 1918.0 5 1918.0 6 3023.5 7 4129.0 8 4467.5 9 4806.0 10 7311.5 11 9817.0 12 9817.0 13 18110.0 14 26403.0 15 40207.5 16 54012.0 17 50429.0 18 46846.0 19 46846.0 20 51057.5 21 55269.0 22 46363.0 23 37457.0 24 42563.5 25 47670.0 26 47670.0 27 53879.0 28 60088.0 29 65642.0 30 71196.0 31 79226.0 32 87256.0 33 87256.0 34 97016.5 35 106777.0 36 115762.0 37 124747.0 38 131487.0 39 138227.0 40 138227.0 41 143153.0 42 148079.0 43 155415.5 44 162752.0 45 168869.0 46 174986.0 47 174986.0 48 210922.5 49 246859.0 50 232962.5 51 219066.0 52 201268.5 53 183471.0 54 183471.0 55 167484.5 56 151498.0 57 132654.0 58 113810.0 59 103100.5 60 92391.0 61 92391.0 62 81370.0 63 70349.0 64 61424.5 65 52500.0 66 44659.5 67 36819.0 68 36819.0 69 31580.5 70 26342.0 71 22067.0 72 17792.0 73 14432.5 74 11073.0 75 11073.0 76 8893.5 77 6714.0 78 5220.5 79 3727.0 80 2915.5 81 2104.0 82 2104.0 83 1619.0 84 1134.0 85 868.0 86 602.0 87 448.0 88 294.0 89 294.0 90 230.5 91 167.0 92 121.5 93 76.0 94 57.0 95 38.0 96 38.0 97 24.0 98 10.0 99 8.0 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2601051.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.40760485437816 #Duplication Level Percentage of deduplicated Percentage of total 1 80.14472711247079 42.80337916784808 2 11.617495171573404 12.409251830420772 3 3.5630831810432375 5.708872157893139 4 1.4919766824879086 3.1873160444104096 5 0.7631688180612789 2.03795093360998 6 0.46205746590175556 1.4806429535337762 7 0.3139568545207777 1.1737378539298429 8 0.23572065657848779 1.007142054604676 9 0.17320913588641115 0.8325616577930764 >10 1.0577764036989759 10.757113917318385 >50 0.10275852312187146 3.794956134996001 >100 0.0656964197783735 6.641667565576687 >500 0.004908647341563407 1.7911249286507434 >1k 0.0030318115933160327 3.000719294356601 >5k 2.165579709511452E-4 0.8066404115916329 >10k+ 2.165579709511452E-4 2.5669230934662384 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 25366 0.9752211702115798 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22956 0.8825663164620763 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 18260 0.7020239126414669 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9975 0.38349882412916936 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5856 0.22513976081207174 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5092 0.1957670187935569 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4854 0.18661687141082586 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4617 0.17750517002550123 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4070 0.15647520944418236 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3929 0.15105432380987532 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2792 0.10734122475876098 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2712 0.10426554496624632 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2701 0.10384263899477558 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 3.8445997406433014E-5 0.0 0.0 0.0 0.0 7 3.8445997406433014E-5 0.0 0.0 7.689199481286603E-5 0.0 8 3.8445997406433014E-5 0.0 0.0 7.689199481286603E-5 0.0 9 3.8445997406433014E-5 0.0 0.0 3.075679792514641E-4 0.0 10 3.8445997406433014E-5 0.0 0.0 4.2290597147076316E-4 0.0 11 7.689199481286603E-5 0.0 0.0 4.997979662836292E-4 0.0 12 7.689199481286603E-5 0.0 0.0 5.382439636900622E-4 0.0 13 7.689199481286603E-5 0.0 0.0 6.920279533157943E-4 0.0 14 7.689199481286603E-5 0.0 0.0 7.689199481286603E-4 0.0 15 7.689199481286603E-5 0.0 0.0 9.611499351608254E-4 0.0 16 7.689199481286603E-5 0.0 0.0 0.0015762858936637536 0.0 17 7.689199481286603E-5 0.0 0.0 0.002345205841792414 0.0 18 7.689199481286603E-5 0.0 0.0 0.002768111813263177 0.0 19 7.689199481286603E-5 0.0 0.0 0.0035370317613918375 0.0 20 7.689199481286603E-5 0.0 0.0 0.005882237603184251 0.0 21 7.689199481286603E-5 0.0 0.0 0.010226635310111183 0.0 22 7.689199481286603E-5 0.0 0.0 0.01580130493404397 0.0 23 7.689199481286603E-5 0.0 0.0 0.019569012679874404 3.8445997406433014E-5 24 7.689199481286603E-5 0.0 0.0 0.02537435828824579 3.8445997406433014E-5 25 7.689199481286603E-5 0.0 0.0 0.02998787797701775 3.8445997406433014E-5 26 7.689199481286603E-5 0.0 0.0 0.03986849931047104 3.8445997406433014E-5 27 7.689199481286603E-5 0.0 0.0 0.09019430991549185 3.8445997406433014E-5 28 7.689199481286603E-5 0.0 0.0 0.18857761727855393 3.8445997406433014E-5 29 7.689199481286603E-5 0.0 0.0 0.31817907453563965 3.8445997406433014E-5 30 7.689199481286603E-5 0.0 0.0 0.4995288443017842 3.8445997406433014E-5 31 7.689199481286603E-5 0.0 0.0 0.7304355047248209 3.8445997406433014E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7630 0.0 22.185452 1 CAATGCG 175 7.2759576E-12 16.914286 19 ACGTTTA 155 4.0199666E-10 16.709679 26 TTAACGG 300 0.0 16.65 35 GTATTGG 830 0.0 16.271084 1 ACCGTTA 120 1.9376912E-6 15.416667 8 CGTTCGC 165 1.6478225E-8 14.575759 23 GTATCAA 11700 0.0 14.499574 2 TAACGGC 350 0.0 14.271429 36 AACGGCC 390 0.0 14.23077 37 TAACCCG 105 1.6569001E-4 14.095238 5 TTCGCTA 105 1.6569001E-4 14.095238 26 TAACACT 355 0.0 14.070422 4 GACCGTT 145 8.921652E-7 14.034483 7 GGACCGT 200 9.858923E-10 13.875001 6 GTATTAG 665 0.0 13.631579 1 GGACCCT 1125 0.0 13.484445 6 ACCGGTC 110 2.4582306E-4 13.454545 8 GTAACAC 280 0.0 13.214286 3 TAAACGT 155 1.88993E-6 13.129032 4 >>END_MODULE