##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088668_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2459290 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.563082027739714 31.0 31.0 34.0 30.0 34.0 2 31.769156138560316 31.0 31.0 34.0 30.0 34.0 3 31.82578223796299 31.0 31.0 34.0 30.0 34.0 4 35.5387050734155 37.0 35.0 37.0 33.0 37.0 5 35.4401038511115 37.0 35.0 37.0 33.0 37.0 6 35.50562398090506 37.0 35.0 37.0 33.0 37.0 7 35.35426850839063 37.0 35.0 37.0 33.0 37.0 8 35.40284960293418 37.0 35.0 37.0 33.0 37.0 9 36.97884552045509 39.0 37.0 39.0 33.0 39.0 10 36.81412074216542 39.0 37.0 39.0 32.0 39.0 11 36.90042857898011 39.0 37.0 39.0 33.0 39.0 12 36.75643580057659 39.0 37.0 39.0 32.0 39.0 13 36.793255777073874 39.0 37.0 39.0 32.0 39.0 14 37.74261351853584 40.0 37.0 41.0 32.0 41.0 15 37.751571795111595 40.0 37.0 41.0 32.0 41.0 16 37.628689987760694 39.0 36.0 41.0 32.0 41.0 17 37.708782616120914 39.0 37.0 41.0 32.0 41.0 18 37.6810067133197 39.0 37.0 41.0 32.0 41.0 19 37.74210198878538 40.0 37.0 41.0 32.0 41.0 20 37.62301599242058 39.0 37.0 41.0 32.0 41.0 21 37.56368830028179 39.0 37.0 41.0 32.0 41.0 22 37.44457424703878 39.0 36.0 41.0 32.0 41.0 23 37.25473449654169 39.0 36.0 41.0 31.0 41.0 24 37.09325537045245 39.0 36.0 41.0 31.0 41.0 25 37.26824896616503 39.0 36.0 41.0 31.0 41.0 26 37.13981921611522 39.0 36.0 41.0 31.0 41.0 27 37.025600478186796 39.0 36.0 41.0 31.0 41.0 28 36.83656543148632 39.0 35.0 41.0 30.0 41.0 29 36.72009929695156 39.0 35.0 41.0 30.0 41.0 30 36.492423016399044 39.0 35.0 40.0 30.0 41.0 31 36.289555522122235 38.0 35.0 40.0 30.0 41.0 32 36.111417929565036 38.0 35.0 40.0 30.0 41.0 33 35.94693631088648 38.0 35.0 40.0 29.0 41.0 34 35.751956458978 38.0 35.0 40.0 28.0 41.0 35 35.59646564658905 38.0 35.0 40.0 27.0 41.0 36 35.38405312102273 38.0 34.0 40.0 26.0 41.0 37 35.27296333494626 38.0 34.0 40.0 25.0 41.0 38 35.06765407902281 38.0 34.0 40.0 25.0 41.0 39 34.94796059025166 38.0 34.0 40.0 24.0 41.0 40 34.74813299773512 38.0 33.0 40.0 23.0 41.0 41 34.57536687417913 38.0 33.0 40.0 22.0 41.0 42 34.2616795904509 38.0 33.0 40.0 21.0 41.0 43 33.893283833952076 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 4.0 14 7.0 15 9.0 16 31.0 17 65.0 18 178.0 19 367.0 20 915.0 21 1765.0 22 3421.0 23 5924.0 24 9886.0 25 15173.0 26 22351.0 27 31055.0 28 42618.0 29 55428.0 30 69574.0 31 85478.0 32 104346.0 33 128463.0 34 156367.0 35 190803.0 36 246759.0 37 344237.0 38 445358.0 39 498704.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.273009689788516 21.44801955035803 14.583965290795312 22.695005469058145 2 18.967710192779215 23.637635252450913 35.15722017330205 22.23743438146782 3 19.852559071927264 24.350279958849914 33.39061273782271 22.40654823140012 4 13.621533044089961 16.37631186236678 35.83595265300147 34.16620244054178 5 12.234181410081773 38.852595667855354 34.95931752660321 13.953905395459664 6 31.984637842629375 36.95867506475446 13.050311268699502 18.00637582391666 7 25.3748032968865 33.85786141528653 21.192376661556793 19.574958626270185 8 27.129008778956525 34.506503909664985 18.782738107339924 19.581749204038566 9 24.028073143061615 14.59998617487161 22.367797209763793 39.004143472302985 10 16.453041324935246 27.861252637956486 33.404397204071095 22.281308833037176 11 32.19750415770405 22.38609517381033 24.02738188664208 21.389018781843543 12 21.04684685417336 27.727514851847484 31.112556876171578 20.113081417807578 13 32.17912486937286 20.96149701743186 26.81818736301941 20.041190750175865 14 20.02931740461678 23.574690256130832 28.413729165734825 27.98226317351756 15 22.015825705793134 29.687226801231247 26.586209841051684 21.710737651923928 16 21.000898633345397 28.672381053068165 27.575031818126373 22.75168849546007 17 21.172248901105604 26.98575605154333 27.21500920997524 24.626985837375827 18 23.036567464593443 25.348535552944142 30.298338138243153 21.316558844219266 19 22.37771877249125 24.419934208653718 31.97463495561727 21.227712063237764 20 23.633853673214627 23.798413363206453 31.85988638997434 20.707846573604577 21 22.069987679370875 25.02734529071399 32.79194401636244 20.110723013552693 22 20.276705878525917 25.229842759495625 32.20018785909755 22.293263502880915 23 21.760386127703523 25.455273676548924 33.300830727567714 19.48350946817984 24 21.601234502641006 25.48487571616198 30.389421337052564 22.52446844414445 25 21.327090339081607 26.166861167247458 31.652102842690372 20.853945650980567 26 21.156309341313957 26.895933379146015 31.41817353789102 20.529583741649013 27 19.673279686413558 26.99108279218799 31.251865375779186 22.083772145619264 28 20.447039592727982 26.20569351316843 31.337377861089987 22.009889033013593 29 20.79112264108747 26.004415908656565 30.586226105908615 22.61823534434735 30 21.045952287042194 26.373506174546314 32.44655977944854 20.133981758962953 31 22.01895669075221 26.12623968706415 31.989761272562404 19.86504234962123 32 21.589605129935876 26.01027125715145 30.77977790337862 21.620345709534053 33 20.920346929398324 25.956271932143014 31.603836879749846 21.519544258708816 34 19.866750159598908 26.64293352959594 32.43513371745504 21.055182593350114 35 19.43064868315652 29.00853498367415 30.89208674048201 20.66872959268732 36 22.120734032993262 26.198333665407496 30.7413521788809 20.939580122718347 37 21.177616303892588 27.177071431185425 30.609972797026785 21.035339467895206 38 20.841299724717295 25.496871048148044 32.203603479052894 21.458225748081762 39 20.30447812173432 25.19475133066861 33.02424683546877 21.476523712128298 40 18.915134042752175 25.8486799035494 32.43334458319271 22.802841470505715 41 20.879400152076414 24.896779151706387 32.32595586531072 21.89786483090648 42 19.357904110535966 27.347079848248885 31.483802235604585 21.811213805610564 43 19.831618068629563 27.391198272672195 30.45887227614474 22.318311382553503 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 549.0 1 623.0 2 697.0 3 1279.5 4 1862.0 5 1862.0 6 3143.0 7 4424.0 8 5014.0 9 5604.0 10 8730.5 11 11857.0 12 11857.0 13 22988.5 14 34120.0 15 53019.0 16 71918.0 17 66192.0 18 60466.0 19 60466.0 20 65027.0 21 69588.0 22 53995.0 23 38402.0 24 41541.5 25 44681.0 26 44681.0 27 48685.0 28 52689.0 29 55713.0 30 58737.0 31 64237.5 32 69738.0 33 69738.0 34 77818.0 35 85898.0 36 94726.0 37 103554.0 38 109267.5 39 114981.0 40 114981.0 41 120065.0 42 125149.0 43 132845.5 44 140542.0 45 153671.0 46 166800.0 47 166800.0 48 230669.5 49 294539.0 50 267525.5 51 240512.0 52 213831.0 53 187150.0 54 187150.0 55 163279.0 56 139408.0 57 115598.0 58 91788.0 59 81209.0 60 70630.0 61 70630.0 62 62329.0 63 54028.0 64 47106.0 65 40184.0 66 33892.0 67 27600.0 68 27600.0 69 23319.5 70 19039.0 71 16103.0 72 13167.0 73 10687.5 74 8208.0 75 8208.0 76 6505.5 77 4803.0 78 3801.5 79 2800.0 80 2191.5 81 1583.0 82 1583.0 83 1196.0 84 809.0 85 616.0 86 423.0 87 309.0 88 195.0 89 195.0 90 142.5 91 90.0 92 69.0 93 48.0 94 36.0 95 24.0 96 24.0 97 13.5 98 3.0 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2459290.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.48272442574555 #Duplication Level Percentage of deduplicated Percentage of total 1 80.19841909833022 38.88237852524794 2 11.435383693471412 11.088371126264777 3 3.4786884161038722 5.05968875522992 4 1.4907894696257316 2.8911014013067087 5 0.7774513247780727 1.8846479166823051 6 0.4732797433909435 1.376753482506641 7 0.3228006402785878 1.0955178140956694 8 0.23430023428660163 0.9087610953443941 9 0.18003026068116368 0.7855521765209995 >10 1.2003322368125413 11.270454395617834 >50 0.12780935056806242 4.269286837965896 >100 0.06881828573828326 6.374223701742957 >500 0.005445922434898294 1.8100082195995706 >1k 0.00561348927904895 5.659164818289703 >5k 4.189171103767873E-4 1.7185308859399537 >10k+ 4.189171103767873E-4 4.925558847644761 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35196 1.4311447612928934 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 34723 1.4119115679728702 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26623 1.0825482151352626 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13999 0.5692293304165024 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10717 0.4357761793037828 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9596 0.39019391775675094 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9283 0.37746666720882854 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8353 0.33965087484599216 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8070 0.32814348856783865 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7005 0.2848383069910421 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4839 0.19676410671372632 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4751 0.19318583818907084 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4573 0.18594797685510858 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4459 0.1813124926299867 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3940 0.16020884076298444 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3890 0.15817573364670293 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3829 0.15569534296483944 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3641 0.1480508602076209 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3349 0.13617751464853675 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3326 0.13524228537504726 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3275 0.1331685161164401 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3259 0.13251792183923003 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3087 0.12552403335922155 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3061 0.12446681765875517 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2711 0.11023506784478447 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2650 0.10775467716292102 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2618 0.10645348860850083 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 4.066214232563057E-5 0.0 0.0 0.0 0.0 3 4.066214232563057E-5 0.0 0.0 4.066214232563057E-5 0.0 4 4.066214232563057E-5 0.0 0.0 8.132428465126114E-5 0.0 5 8.132428465126114E-5 0.0 0.0 8.132428465126114E-5 0.0 6 8.132428465126114E-5 0.0 0.0 8.132428465126114E-5 0.0 7 1.219864269768917E-4 0.0 0.0 1.219864269768917E-4 0.0 8 2.439728539537834E-4 0.0 0.0 1.219864269768917E-4 4.066214232563057E-5 9 2.439728539537834E-4 0.0 0.0 3.2529713860504454E-4 4.066214232563057E-5 10 2.84634996279414E-4 0.0 0.0 5.286078502331974E-4 4.066214232563057E-5 11 2.84634996279414E-4 0.0 0.0 0.0010978778427920253 4.066214232563057E-5 12 2.84634996279414E-4 0.0 0.0 0.0017484721200021144 4.066214232563057E-5 13 2.84634996279414E-4 0.0 0.0 0.0019517828316302673 4.066214232563057E-5 14 2.84634996279414E-4 0.0 0.0 0.002358404254886573 4.066214232563057E-5 15 2.84634996279414E-4 0.0 0.0 0.003049660674422293 4.066214232563057E-5 16 3.659592809306751E-4 0.0 0.0 0.004554159940470624 4.066214232563057E-5 17 3.659592809306751E-4 0.0 0.0 0.006099321348844586 4.066214232563057E-5 18 3.659592809306751E-4 0.0 0.0 0.007400509903264764 4.066214232563057E-5 19 4.879457079075668E-4 0.0 0.0 0.009514941304197553 4.066214232563057E-5 20 4.879457079075668E-4 0.0 0.0 0.01598022193397281 8.132428465126114E-5 21 4.879457079075668E-4 0.0 0.0 0.027731581066080046 8.132428465126114E-5 22 4.879457079075668E-4 0.0 0.0 0.04480968084284489 8.132428465126114E-5 23 4.879457079075668E-4 0.0 0.0 0.05408064929308866 8.132428465126114E-5 24 5.286078502331974E-4 0.0 0.0 0.06819041268008247 8.132428465126114E-5 25 5.286078502331974E-4 0.0 0.0 0.0770140975647443 8.132428465126114E-5 26 5.286078502331974E-4 0.0 0.0 0.09209975236755323 8.132428465126114E-5 27 5.286078502331974E-4 0.0 0.0 0.1512631694513457 8.132428465126114E-5 28 5.286078502331974E-4 0.0 0.0 0.2817479841742942 8.132428465126114E-5 29 5.286078502331974E-4 0.0 0.0 0.44220079779123245 8.132428465126114E-5 30 5.286078502331974E-4 0.0 0.0 0.7071959793273669 8.132428465126114E-5 31 5.286078502331974E-4 0.0 0.0 1.027694985137987 8.132428465126114E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9845 0.0 25.011173 1 GTATTGG 755 0.0 21.317883 1 GTACGAT 60 9.240896E-4 18.5 20 ATTGGAC 885 0.0 18.18644 3 CGAACTA 190 0.0 17.526316 24 CGAATTA 170 5.456968E-12 17.411764 15 GGACCCT 1395 0.0 16.97491 6 TTGGACC 1490 0.0 16.513422 4 CGTAACG 90 4.449273E-5 16.444445 21 TGGACCC 1470 0.0 16.234694 5 GTATCAA 15635 0.0 15.772626 2 TATACTG 250 0.0 15.54 5 TCTATAC 240 0.0 15.416667 3 CTGGTCG 110 1.4531277E-5 15.136364 9 TTTTTAC 1680 0.0 14.97619 1 CCGAATT 210 9.094947E-12 14.97619 14 GACCCTC 1515 0.0 14.897689 7 CGGGTAC 75 0.004106175 14.8 6 ATAAGAC 150 8.112511E-8 14.8 3 TATTGGA 1095 0.0 14.698629 2 >>END_MODULE