##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088667_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2368928 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.553373509030244 31.0 31.0 34.0 30.0 34.0 2 31.749422101473748 31.0 31.0 34.0 30.0 34.0 3 31.80858557119507 31.0 31.0 34.0 30.0 34.0 4 35.514538221507784 37.0 35.0 37.0 33.0 37.0 5 35.4197725722352 37.0 35.0 37.0 33.0 37.0 6 35.49172663753394 37.0 35.0 37.0 33.0 37.0 7 35.34049029772116 37.0 35.0 37.0 33.0 37.0 8 35.39825819948939 37.0 35.0 37.0 33.0 37.0 9 36.96563508895163 39.0 37.0 39.0 33.0 39.0 10 36.81711136851774 39.0 37.0 39.0 32.0 39.0 11 36.89218203339232 39.0 37.0 39.0 33.0 39.0 12 36.7584945595645 39.0 37.0 39.0 32.0 39.0 13 36.803340160612734 39.0 37.0 39.0 32.0 39.0 14 37.75179785962258 40.0 37.0 41.0 32.0 41.0 15 37.768282531170215 40.0 37.0 41.0 32.0 41.0 16 37.63250888165449 39.0 36.0 41.0 32.0 41.0 17 37.72111562698402 39.0 37.0 41.0 32.0 41.0 18 37.69395059706331 39.0 37.0 41.0 32.0 41.0 19 37.76066769441705 40.0 37.0 41.0 32.0 41.0 20 37.64703486133813 39.0 37.0 41.0 32.0 41.0 21 37.58953290264626 39.0 37.0 41.0 32.0 41.0 22 37.47031779775494 39.0 36.0 41.0 32.0 41.0 23 37.30257610193303 39.0 36.0 41.0 31.0 41.0 24 37.14036348930824 39.0 36.0 41.0 31.0 41.0 25 37.30596075524457 39.0 36.0 41.0 31.0 41.0 26 37.17074474192546 39.0 36.0 41.0 31.0 41.0 27 37.04840459482095 39.0 36.0 41.0 31.0 41.0 28 36.86365478393603 39.0 35.0 41.0 30.0 41.0 29 36.73926096529738 39.0 35.0 41.0 30.0 41.0 30 36.51775950978671 39.0 35.0 40.0 30.0 41.0 31 36.31833766159208 38.0 35.0 40.0 30.0 41.0 32 36.13385083886045 38.0 35.0 40.0 30.0 41.0 33 35.969643231031085 38.0 35.0 40.0 30.0 41.0 34 35.776365512164155 38.0 35.0 40.0 29.0 41.0 35 35.60509268327277 38.0 35.0 40.0 27.0 41.0 36 35.37817696443286 38.0 34.0 40.0 26.0 41.0 37 35.25745569303921 38.0 34.0 40.0 25.0 41.0 38 35.03294823650191 38.0 34.0 40.0 24.0 41.0 39 34.90228196044793 38.0 34.0 40.0 24.0 41.0 40 34.692187352253846 38.0 33.0 40.0 23.0 41.0 41 34.516102220075915 38.0 33.0 40.0 22.0 41.0 42 34.19009484458793 38.0 33.0 40.0 20.0 41.0 43 33.81182247835308 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 2.0 14 5.0 15 10.0 16 20.0 17 66.0 18 173.0 19 403.0 20 848.0 21 1822.0 22 3318.0 23 5833.0 24 9565.0 25 15059.0 26 21635.0 27 30442.0 28 41354.0 29 53611.0 30 66847.0 31 82488.0 32 100068.0 33 122904.0 34 150439.0 35 183301.0 36 236189.0 37 330112.0 38 422966.0 39 489445.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.40978535438815 21.68238122897783 14.591958894487295 22.315874522146725 2 18.95515608747923 23.964890448337815 35.10174222264248 21.97821124154048 3 20.16633684096773 24.690535128125465 33.32410271650299 21.819025314403813 4 13.645834740439557 16.48581130367829 35.94929858568939 33.919055370192766 5 12.199273257777357 39.130948682273164 34.845888097907576 13.823889962041902 6 31.88931871293682 36.81813039484526 13.034672223047725 18.25787866917019 7 24.989615556065868 33.90330985154467 21.515765780977723 19.591308811411746 8 27.006434978184224 34.47559402396358 18.911254373286145 19.606716624566047 9 23.815582406894595 14.70171317997001 22.774140877223793 38.7085635359116 10 16.572517189209634 27.875857771954234 33.30616211214524 22.24546292669089 11 31.665673249672427 22.56434133920491 24.23995157303219 21.53003383809048 12 20.738325521079577 27.9424701806049 31.34291122397979 19.976293074335732 13 31.854746113009767 21.093887192856855 27.198969322832944 19.852397371300437 14 19.778566507719948 23.980889246106255 28.72839529103459 27.512148955139203 15 21.884624606573098 29.62428575288063 27.094196193383674 21.396893447162597 16 20.576817868673086 28.892857866511772 28.00794283321401 22.52238143160113 17 20.698982831052696 27.04400471436869 27.69978657012792 24.557225884450688 18 22.598196314957654 25.472407772629644 30.762395480149674 21.167000432263034 19 21.986696092072027 24.53983405152035 32.420571667859896 21.05289818854773 20 23.33181928703616 23.964088397790057 32.37346175147577 20.33063056369801 21 21.586852787421147 25.281857447756963 33.293202663820935 19.83808710100096 22 19.807524753812693 25.47667130448878 32.702049196936336 22.01375474476219 23 21.219640276108013 25.82590099825744 33.88051473071364 19.07394399492091 24 21.22668987829094 25.81175958070486 30.853829242594117 22.107721298410084 25 20.99890752272758 26.501311985843383 32.06045097191641 20.439329519512622 26 20.794004714368693 27.190822177795187 31.903375704115955 20.111797403720164 27 19.34997602290994 27.25810999743344 31.626626051952613 21.76528792770401 28 19.953033608450742 26.58903098785611 31.871335895392345 21.586599508300804 29 20.30420510880871 26.386196625646708 31.128637088168148 22.180961177376435 30 20.5474374907131 26.70587708870848 33.05714652365965 19.689538896918776 31 21.489002620594633 26.407176579448592 32.57557848951087 19.528242310445908 32 21.048930148995666 26.342463764200513 31.30787427899877 21.300731807805047 33 20.35963102297748 26.33921334882276 32.13837651460914 21.16277911359062 34 19.33726985370598 27.091874468113847 32.89690526685488 20.673950411325293 35 18.912394129327694 29.524789271771873 31.326405867970657 20.236410730929773 36 21.53231335017358 26.51245626713855 31.34358663496738 20.611643747720485 37 20.585471571951533 27.46123985194991 31.23535202420673 20.717936551891828 38 20.345658458171798 25.69921922489835 32.70209141012306 21.253030906806792 39 19.729641424306692 25.512341447270664 33.51672148752516 21.241295640897487 40 18.39676005349255 26.26812634237934 32.93139344040849 22.403720163719623 41 20.39319050642316 25.283377122479028 32.74945460562753 21.57397776547029 42 18.769713558200166 27.753101824960492 31.8938355239163 21.583349092923044 43 19.370280565724244 27.702868132758784 30.768896310905188 22.157954990611785 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 685.0 1 728.0 2 771.0 3 1515.0 4 2259.0 5 2259.0 6 3641.0 7 5023.0 8 5651.0 9 6279.0 10 9800.0 11 13321.0 12 13321.0 13 25297.5 14 37274.0 15 56357.0 16 75440.0 17 69042.0 18 62644.0 19 62644.0 20 67407.0 21 72170.0 22 55901.5 23 39633.0 24 42808.5 25 45984.0 26 45984.0 27 49541.0 28 53098.0 29 55896.0 30 58694.0 31 63918.5 32 69143.0 33 69143.0 34 76041.0 35 82939.0 36 91252.0 37 99565.0 38 104510.5 39 109456.0 40 109456.0 41 113107.5 42 116759.0 43 124007.5 44 131256.0 45 145644.0 46 160032.0 47 160032.0 48 222886.0 49 285740.0 50 259395.5 51 233051.0 52 205850.5 53 178650.0 54 178650.0 55 155363.5 56 132077.0 57 108470.0 58 84863.0 59 74613.5 60 64364.0 61 64364.0 62 56190.0 63 48016.0 64 41286.5 65 34557.0 66 29207.0 67 23857.0 68 23857.0 69 19988.0 70 16119.0 71 13263.5 72 10408.0 73 8428.5 74 6449.0 75 6449.0 76 5144.5 77 3840.0 78 2994.5 79 2149.0 80 1677.5 81 1206.0 82 1206.0 83 908.0 84 610.0 85 434.5 86 259.0 87 207.0 88 155.0 89 155.0 90 118.0 91 81.0 92 58.0 93 35.0 94 22.5 95 10.0 96 10.0 97 7.5 98 5.0 99 3.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2368928.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.69881255915797 #Duplication Level Percentage of deduplicated Percentage of total 1 80.21875180707683 37.46120454368295 2 11.304472185870274 10.558108553763415 3 3.4397420212397356 4.818956037052007 4 1.4687348923276462 2.7435270174361523 5 0.7767744970282392 1.8137223318727975 6 0.5028483679856058 1.408945300934298 7 0.34016624925431715 1.1119751939015416 8 0.2516376121967879 0.9400942147849504 9 0.19259694527091462 0.8094643782005562 >10 1.274003694578426 11.573280787090495 >50 0.13290274290711582 4.278608163893505 >100 0.08392904387478309 7.646526913860701 >500 0.00617510774647579 1.9467108814117875 >1k 0.006356728562548604 5.99491958938628 >5k 4.5405204018204306E-4 1.6867960357049385 >10k+ 4.5405204018204306E-4 5.207160057023675 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35904 1.515622256142863 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35004 1.4776303880911534 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26572 1.1216887976333598 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14912 0.6294830404301017 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10397 0.43889050237069255 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8860 0.37400883437571764 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8785 0.3708428453714085 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7659 0.3233107971200475 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7286 0.3075652784719502 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7186 0.30334395979953804 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4543 0.19177450728768455 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4523 0.19093024355320212 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4452 0.1879331072957895 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4331 0.18282531170217078 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4176 0.17628226775993192 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4151 0.17522693809182888 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3973 0.16771299085493524 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3903 0.1647580677842467 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3702 0.15627321725269827 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3203 0.1352088370773616 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 3070 0.1295944832430534 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2957 0.12482439314322766 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2939 0.12406455578219346 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2902 0.12250266787340097 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2763 0.11663503491874806 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 2715 0.11460880195599023 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2436 0.10283132285996029 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 4.221318672412163E-5 0.0 8 0.0 0.0 0.0 8.442637344824326E-5 0.0 9 0.0 0.0 0.0 4.221318672412163E-4 0.0 10 0.0 0.0 0.0 6.754109875859461E-4 0.0 11 0.0 0.0 0.0 8.864769212065542E-4 0.0 12 0.0 0.0 0.0 0.0013086087884477706 0.0 13 0.0 0.0 0.0 0.0013508219751718921 0.0 14 0.0 0.0 0.0 0.002026232962757838 0.0 15 0.0 0.0 0.0 0.0027016439503437842 0.0 16 0.0 0.0 0.0 0.004305745045860406 0.0 17 4.221318672412163E-5 0.0 0.0 0.0059520593281011495 0.0 18 8.442637344824326E-5 0.0 0.0 0.006922962622755947 0.0 19 8.442637344824326E-5 0.0 0.0 0.009118048332410271 0.0 20 8.442637344824326E-5 0.0 0.0 0.015703305461373246 0.0 21 8.442637344824326E-5 0.0 0.0 0.027143079063610208 0.0 22 8.442637344824326E-5 0.0 0.0 0.04466155155412068 0.0 23 8.442637344824326E-5 0.0 0.0 0.05597468559618528 0.0 24 8.442637344824326E-5 0.0 0.0 0.07214233611152386 0.0 25 8.442637344824326E-5 0.0 0.0 0.0833288305934161 0.0 26 8.442637344824326E-5 0.0 0.0 0.10215591187237434 0.0 27 8.442637344824326E-5 0.0 0.0 0.17442488754407057 0.0 28 8.442637344824326E-5 0.0 0.0 0.3265612124978049 0.0 29 1.2663956017236488E-4 0.0 0.0 0.5151275175944562 0.0 30 1.2663956017236488E-4 0.0 0.0 0.8109997433438247 0.0 31 1.2663956017236488E-4 0.0 0.0 1.1479031865890394 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11810 0.0 23.45004 1 GTATTGG 1070 0.0 18.845795 1 TAATACT 475 0.0 17.915789 4 GTTCTAT 145 1.546141E-10 17.862068 1 CAATGCG 150 2.5102054E-10 17.266666 19 ATTGGAC 1190 0.0 17.256304 3 TTGGACC 1580 0.0 17.094936 4 GGACCCT 1565 0.0 16.667732 6 TGGACCC 1630 0.0 16.003067 5 GTATCAA 17760 0.0 15.604167 2 TCTATCG 95 7.064734E-5 15.578948 31 GTACTAT 230 0.0 15.282609 1 TCTAACG 85 5.367134E-4 15.235294 2 TATTGGA 1295 0.0 15.000001 2 GACCCTC 1735 0.0 14.608069 7 ATACGTC 115 2.211691E-5 14.478261 5 TATACGT 115 2.211691E-5 14.478261 4 CGAATTA 135 6.573542E-6 13.703704 15 ATTAGAC 205 1.4260877E-9 13.536585 3 CGTTCGC 220 2.8558134E-10 13.454545 23 >>END_MODULE