##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088656_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3349948 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.564064278012673 31.0 31.0 34.0 30.0 34.0 2 31.768771336152085 31.0 31.0 34.0 30.0 34.0 3 31.84302950374155 31.0 31.0 34.0 30.0 34.0 4 35.55343396375108 37.0 35.0 37.0 33.0 37.0 5 35.44354987002783 37.0 35.0 37.0 33.0 37.0 6 35.49338467343374 37.0 35.0 37.0 33.0 37.0 7 35.347182105513276 37.0 35.0 37.0 33.0 37.0 8 35.38207458742643 37.0 35.0 37.0 33.0 37.0 9 36.967471435377504 39.0 37.0 39.0 33.0 39.0 10 36.78940270117626 39.0 37.0 39.0 32.0 39.0 11 36.881021735262756 39.0 37.0 39.0 33.0 39.0 12 36.730584176231986 39.0 35.0 39.0 32.0 39.0 13 36.76685190337283 39.0 37.0 39.0 32.0 39.0 14 37.72931818643155 40.0 37.0 41.0 32.0 41.0 15 37.7399117837053 40.0 37.0 41.0 32.0 41.0 16 37.63169517855203 39.0 36.0 41.0 32.0 41.0 17 37.681305500861505 39.0 37.0 41.0 32.0 41.0 18 37.6476381125916 39.0 37.0 41.0 32.0 41.0 19 37.6981436726779 40.0 37.0 41.0 32.0 41.0 20 37.580934689135475 39.0 37.0 41.0 32.0 41.0 21 37.51586979857598 39.0 36.0 41.0 32.0 41.0 22 37.3908400966224 39.0 36.0 41.0 32.0 41.0 23 37.19925622726084 39.0 36.0 41.0 31.0 41.0 24 37.03564204578698 39.0 36.0 41.0 31.0 41.0 25 37.2243184073305 39.0 36.0 41.0 31.0 41.0 26 37.09300323467708 39.0 36.0 41.0 31.0 41.0 27 36.98233345711635 39.0 36.0 41.0 31.0 41.0 28 36.80729850134987 39.0 35.0 41.0 30.0 41.0 29 36.69455406471981 39.0 35.0 41.0 30.0 41.0 30 36.48217464868112 39.0 35.0 40.0 30.0 41.0 31 36.30938748899983 38.0 35.0 40.0 30.0 41.0 32 36.12914737781004 38.0 35.0 40.0 30.0 41.0 33 35.97946535289503 38.0 35.0 40.0 29.0 41.0 34 35.78630593668917 38.0 35.0 40.0 28.0 41.0 35 35.644096266568916 38.0 35.0 40.0 27.0 41.0 36 35.44585378638713 38.0 34.0 40.0 26.0 41.0 37 35.36338056590729 38.0 34.0 40.0 26.0 41.0 38 35.164660167859324 38.0 34.0 40.0 25.0 41.0 39 35.06647744979922 38.0 34.0 40.0 24.0 41.0 40 34.88561046320719 38.0 34.0 40.0 24.0 41.0 41 34.74460469237135 38.0 33.0 40.0 23.0 41.0 42 34.45803457247695 38.0 33.0 40.0 22.0 41.0 43 34.103249363870724 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 1.0 13 4.0 14 9.0 15 22.0 16 37.0 17 90.0 18 216.0 19 521.0 20 1225.0 21 2587.0 22 4746.0 23 8136.0 24 13477.0 25 20513.0 26 30465.0 27 42958.0 28 57146.0 29 74502.0 30 93997.0 31 115676.0 32 142217.0 33 174096.0 34 212365.0 35 260743.0 36 334648.0 37 463299.0 38 607430.0 39 688820.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.37073172479096 21.35442102384873 14.153234617373164 23.121612633987155 2 19.00226510978678 23.584037722376586 34.810719449973554 22.602977717863084 3 19.780993615423284 24.25437648584396 32.91946621260987 23.045163686122887 4 13.700929089048547 16.263715138264836 35.96333435623478 34.07202141645184 5 12.490910306667447 38.78069152118182 34.84340652451919 13.884991647631544 6 32.51919134267159 37.089023471409114 13.39907365726274 16.992711528656564 7 25.940641466673515 33.36965230505071 21.268210730435218 19.421495497840564 8 27.15149608292427 34.314592345911045 18.953786745346495 19.580124825818192 9 24.492529436277817 14.42673140000979 22.032043482465998 39.0486956812464 10 16.298312690226833 28.004882463847203 33.51792326328648 22.17888158263949 11 32.90866007472355 22.49581187528881 23.632993706170964 20.96253434381668 12 21.0748942968667 27.438276653846565 30.96397317212088 20.522855877165856 13 31.69326807460892 21.121163671794307 26.303124705219304 20.882443548377466 14 20.348286003245423 23.148299615397015 28.182258351472917 28.32115602988464 15 22.383123558932855 29.80308948079194 25.787743570944983 22.026043389330223 16 21.5532300799893 28.580055571011847 26.83152096689262 23.035193382106232 17 21.41498912818945 27.143107893018044 27.14892887889603 24.292974099896476 18 22.942624781041378 25.7973855116557 29.72998386840632 21.530005838896603 19 22.491901366827186 24.97456676939463 31.14546852667564 21.388063337102544 20 23.539798229703866 24.572291868411092 30.841075742071222 21.046834159813823 21 22.271509886123606 25.45657425130181 31.509115962397026 20.762799900177555 22 20.861846213732274 25.81881868017056 31.047646112715782 22.27168899338139 23 22.086283130365008 25.929029346127162 31.699029358067648 20.28565816544018 24 21.889593510108217 26.065121010833604 29.473950043403658 22.571335435654525 25 21.7844276985792 26.40246953087033 30.55471308808376 21.258389682466714 26 21.500841207087394 27.190332506653835 30.388591106488818 20.920235179769957 27 20.31410636821825 27.18627274214406 30.235245442615827 22.264375447021862 28 20.909429041883634 26.566710886258534 30.392561317369704 22.131298754488128 29 21.20501571964699 26.40252923328959 29.817835978349517 22.574619068713904 30 21.39743661692659 26.72608649447693 31.274067537764765 20.602409350831717 31 22.173538216115592 26.606114482971076 30.860896945266013 20.35945035564731 32 21.721978968031745 26.42706692760604 29.951539546285495 21.89941455807672 33 21.25337467924875 26.31109497819071 30.592236058589567 21.843294283970973 34 20.51175122718323 26.892954756312637 31.181289978232495 21.41400403827164 35 20.06858016900561 28.792685737211443 30.1446470213866 20.994087072396347 36 22.330107810628704 26.468142192057908 29.97216673214032 21.229583265173073 37 21.35794346658515 27.08092782335726 30.103183691209534 21.457945018848054 38 21.075670428317096 25.75607143752679 31.367860038424478 21.800398095731634 39 20.61640956814852 25.49511216293507 32.085781630043215 21.8026966388732 40 19.52051196018565 25.987119800068538 31.811449013536926 22.680919226208886 41 20.866503002434662 25.13546478930419 31.763567673289256 22.234464534971888 42 19.61666270640619 27.04421083551148 31.13618480048049 22.202941657601848 43 19.90239848499141 26.936776332050528 30.447696501557637 22.713128681400427 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1253.0 1 1112.0 2 971.0 3 1832.5 4 2694.0 5 2694.0 6 4350.0 7 6006.0 8 6538.0 9 7070.0 10 10834.5 11 14599.0 12 14599.0 13 27870.0 14 41141.0 15 64414.0 16 87687.0 17 81200.0 18 74713.0 19 74713.0 20 79929.0 21 85145.0 22 68390.0 23 51635.0 24 57631.5 25 63628.0 26 63628.0 27 69942.0 28 76256.0 29 81324.0 30 86392.0 31 94649.5 32 102907.0 33 102907.0 34 114514.5 35 126122.0 36 136655.5 37 147189.0 38 154936.5 39 162684.0 40 162684.0 41 167891.0 42 173098.0 43 181805.5 44 190513.0 45 204816.5 46 219120.0 47 219120.0 48 286653.5 49 354187.0 50 326536.5 51 298886.0 52 270852.5 53 242819.0 54 242819.0 55 218207.0 56 193595.0 57 166951.5 58 140308.0 59 126890.0 60 113472.0 61 113472.0 62 100174.0 63 86876.0 64 76795.5 65 66715.0 66 56714.5 67 46714.0 68 46714.0 69 39339.5 70 31965.0 71 26876.0 72 21787.0 73 17782.0 74 13777.0 75 13777.0 76 11000.0 77 8223.0 78 6380.0 79 4537.0 80 3550.0 81 2563.0 82 2563.0 83 1955.5 84 1348.0 85 1010.5 86 673.0 87 522.0 88 371.0 89 371.0 90 289.5 91 208.0 92 134.0 93 60.0 94 45.5 95 31.0 96 31.0 97 18.5 98 6.0 99 5.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3349948.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.020671901761865 #Duplication Level Percentage of deduplicated Percentage of total 1 77.12701362277286 35.494369886963476 2 12.53254230100897 11.535120346593711 3 4.181209423048533 5.772662010320146 4 1.873703830051519 3.4491643681550213 5 1.0225149716650896 2.352841301281921 6 0.6366649870308644 1.7579850287692131 7 0.42855975949284036 1.380582565734259 8 0.30906245335508864 1.137860941040649 9 0.23974027032197348 0.9929707489914517 >10 1.414841385185579 12.26725659368534 >50 0.13735366983144168 4.369110486002931 >100 0.0859945190847499 7.5055938883600755 >500 0.0051391913550288965 1.5891311783575734 >1k 0.0048789791341256 4.541213054907364 >5k 4.5537138585172263E-4 1.6406242855201363 >10k+ 3.252652756083733E-4 4.213513315316783 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 43624 1.3022291689303835 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38365 1.1452416574824444 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 31495 0.9401638473194212 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16419 0.4901270109267368 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10839 0.32355726118733785 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9929 0.2963926604233857 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9469 0.282661103993256 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9058 0.2703922568350315 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8064 0.2407201544620991 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7481 0.22331689924739132 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5461 0.16301745579334365 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5339 0.15937560821839622 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4974 0.14847991670318464 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4881 0.145703754207528 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4565 0.13627077196422152 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3934 0.11743465868723933 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3891 0.11615105667311851 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3876 0.11570328852865777 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3733 0.11143456555146529 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 3466 0.10346429258006394 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 2.9851209630716654E-5 0.0 0.0 0.0 0.0 7 5.970241926143331E-5 0.0 0.0 0.0 0.0 8 5.970241926143331E-5 0.0 0.0 0.0 0.0 9 1.7910725778429995E-4 0.0 0.0 1.492560481535833E-4 0.0 10 2.3880967704573324E-4 0.0 0.0 2.3880967704573324E-4 0.0 11 2.686608866764499E-4 0.0 0.0 4.7761935409146647E-4 0.0 12 2.686608866764499E-4 0.0 0.0 8.059826600293498E-4 0.0 13 2.686608866764499E-4 0.0 0.0 9.552387081829329E-4 0.0 14 2.686608866764499E-4 0.0 0.0 0.0011940483852286663 0.0 15 2.985120963071666E-4 0.0 0.0 0.0015821141104279829 0.0 16 3.2836330593788324E-4 0.0 0.0 0.0025075016089801993 0.0 17 3.2836330593788324E-4 0.0 0.0 0.003641847574947432 0.0 18 3.2836330593788324E-4 0.0 0.0 0.004298574186823199 0.0 19 3.2836330593788324E-4 0.0 5.970241926143331E-5 0.0055224737816825815 0.0 20 3.8806572519931655E-4 0.0 5.970241926143331E-5 0.00892551167958428 0.0 21 5.671729829836165E-4 0.0 5.970241926143331E-5 0.015761438685018395 0.0 22 5.671729829836165E-4 0.0 5.970241926143331E-5 0.02417947980088049 0.0 23 5.671729829836165E-4 0.0 5.970241926143331E-5 0.029672102372932357 0.0 24 6.268754022450498E-4 0.0 5.970241926143331E-5 0.03791103623101015 0.0 25 6.268754022450498E-4 0.0 5.970241926143331E-5 0.043582766060846316 0.0 26 7.462802407679164E-4 0.0 5.970241926143331E-5 0.05409039185085858 0.0 27 7.462802407679164E-4 0.0 5.970241926143331E-5 0.11256891151743251 0.0 28 7.761314503986331E-4 0.0 5.970241926143331E-5 0.23018267746245613 0.0 29 7.761314503986331E-4 0.0 5.970241926143331E-5 0.38457313367252266 0.0 30 8.059826600293498E-4 0.0 5.970241926143331E-5 0.6164573300839297 0.0 31 8.65685079290783E-4 0.0 5.970241926143331E-5 0.8982228977882641 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11770 0.0 24.598557 1 GTATTGG 985 0.0 19.908628 1 GGACCCT 1535 0.0 16.993484 6 ATTGGAC 1130 0.0 16.535398 3 TGGACCC 1650 0.0 16.369696 5 TTGGACC 1695 0.0 15.935103 4 GTATCAA 18500 0.0 15.64 2 GACCCTC 1685 0.0 14.93175 7 CATTGCG 175 2.242814E-9 14.8 29 TGTTACG 100 1.0943568E-4 14.8 16 AATACTG 785 0.0 14.375796 5 GTATTAG 580 0.0 14.353448 1 CGAACTA 285 0.0 14.280702 24 TATTGGA 1300 0.0 14.088461 2 ACGCGAA 80 0.00630194 13.875001 34 TAGGTCG 200 9.858923E-10 13.875001 21 ATACGAC 95 0.0012459443 13.631579 19 ACCCTCG 1940 0.0 13.445876 8 TATACCG 180 5.1682946E-8 13.361111 5 TAATACT 890 0.0 13.30337 4 >>END_MODULE