##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088650_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2555709 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.350063328806215 31.0 31.0 34.0 30.0 34.0 2 31.5658046358173 31.0 31.0 34.0 30.0 34.0 3 31.64679899002586 31.0 31.0 34.0 30.0 34.0 4 35.39513770934015 37.0 35.0 37.0 33.0 37.0 5 35.247636174541 37.0 35.0 37.0 33.0 37.0 6 35.30030296876522 37.0 35.0 37.0 32.0 37.0 7 35.162104136269036 37.0 35.0 37.0 32.0 37.0 8 35.17796353184185 37.0 35.0 37.0 32.0 37.0 9 36.7495990349449 39.0 37.0 39.0 32.0 39.0 10 36.514029179378404 38.0 35.0 39.0 32.0 39.0 11 36.63261192882288 39.0 35.0 39.0 32.0 39.0 12 36.471216793461224 38.0 35.0 39.0 32.0 39.0 13 36.518631033501855 38.0 35.0 39.0 32.0 39.0 14 37.458023585627316 39.0 36.0 41.0 32.0 41.0 15 37.47220751658346 39.0 36.0 41.0 32.0 41.0 16 37.35247166246236 39.0 36.0 41.0 32.0 41.0 17 37.35603388335683 39.0 36.0 41.0 32.0 41.0 18 37.31120561848004 39.0 36.0 40.0 32.0 41.0 19 37.3612594391615 39.0 36.0 41.0 32.0 41.0 20 37.227840884858175 39.0 36.0 40.0 31.0 41.0 21 37.159903181465495 39.0 36.0 40.0 31.0 41.0 22 37.01653122479907 39.0 36.0 40.0 31.0 41.0 23 36.83220507499093 39.0 36.0 40.0 30.0 41.0 24 36.676264394733515 39.0 35.0 40.0 30.0 41.0 25 36.875119585210996 39.0 36.0 40.0 30.0 41.0 26 36.74502926585147 39.0 36.0 40.0 30.0 41.0 27 36.62065125567895 39.0 35.0 40.0 30.0 41.0 28 36.44925537297087 39.0 35.0 40.0 30.0 41.0 29 36.34841134104078 39.0 35.0 40.0 30.0 41.0 30 36.15378041866269 38.0 35.0 40.0 29.0 41.0 31 36.02484476910321 38.0 35.0 40.0 29.0 41.0 32 35.8523654297105 38.0 35.0 40.0 28.0 41.0 33 35.72783951537519 38.0 34.0 40.0 27.0 41.0 34 35.532906132896976 38.0 34.0 40.0 27.0 41.0 35 35.40651420016911 38.0 34.0 40.0 26.0 41.0 36 35.21932113554399 38.0 34.0 40.0 25.0 41.0 37 35.17216005421587 38.0 34.0 40.0 25.0 41.0 38 34.98480499931721 38.0 33.0 40.0 25.0 41.0 39 34.90480684616285 38.0 33.0 40.0 24.0 41.0 40 34.76314361298567 38.0 33.0 40.0 24.0 41.0 41 34.649571997437896 38.0 33.0 40.0 23.0 41.0 42 34.40412308287055 38.0 33.0 40.0 23.0 41.0 43 34.06227508687413 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 2.0 13 3.0 14 5.0 15 29.0 16 50.0 17 103.0 18 266.0 19 626.0 20 1269.0 21 2554.0 22 4623.0 23 7879.0 24 12228.0 25 18531.0 26 26504.0 27 35946.0 28 48596.0 29 62148.0 30 77589.0 31 95298.0 32 116270.0 33 140555.0 34 168997.0 35 207094.0 36 263091.0 37 352002.0 38 483028.0 39 430421.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.39247034775869 22.235277960049444 13.82410908284159 23.548142609350283 2 19.238888308488956 24.06416379955621 34.024491833772935 22.672456058181897 3 20.077324922360095 25.136390723670026 32.09864659865423 22.68763775531565 4 14.31266235709934 17.17875548429027 36.387906447878066 32.12067571073233 5 12.743626132709164 38.945318109377865 35.02918368249281 13.281872075420168 6 32.27742282082976 38.01688689909532 14.126608311040107 15.579081969034817 7 26.22563836493122 32.891264224526346 22.06996179925023 18.81313561129221 8 26.76235831231177 34.90933435692405 19.483008433276243 18.84529889748794 9 24.968139956466093 14.403948180328824 21.393163306151052 39.23474855705403 10 15.760518901017292 28.219879493322598 34.46362633617521 21.555975269484907 11 33.35841443607234 22.748794952790007 23.438466585984553 20.4543240251531 12 20.541070990476616 27.258698075563377 31.43112146179397 20.769109472166043 13 30.783982057425163 21.351570151374823 26.20760031756354 21.65684747363647 14 20.47830954150101 22.8441892249861 27.84092398625978 28.83657724725311 15 22.834759356405602 29.93975448691537 25.06975559424019 22.155730562438837 16 21.861800384942104 28.62642030058978 26.608154527765095 22.903624786703027 17 21.594790330198 27.442795717352798 27.419123225688057 23.543290726761146 18 22.409280555806628 26.4949961047991 29.31660059889448 21.779122740499798 19 22.43044885000601 25.77061785985807 30.292924585702053 21.506008704433878 20 23.256912269745893 25.615083720407917 29.87621047623184 21.251793533614354 21 22.309895218900117 26.266527214170317 30.232315181423235 21.19126238550633 22 21.505813064006894 26.541715038762238 29.87304110131474 22.079430795916124 23 22.13714472187561 26.687897565802682 30.326026945947287 20.84893076637442 24 22.096881922002858 26.700379425044083 28.681630029083905 22.52110862386915 25 22.161325878650505 26.72236940903679 29.552621210004737 21.56368350230797 26 21.82396352636392 27.35886597417781 29.403464948474177 21.41370555098409 27 21.133078922522085 27.367004615940232 29.330021532185395 22.169894929352285 28 21.53781983786104 26.991374996136102 29.548199736354963 21.9226054296479 29 21.648630575703258 26.960737705270827 29.159501336028477 22.23113038299744 30 21.781470425623574 27.146791751330063 30.02998385183916 21.041753971207207 31 22.189419843965023 27.004443776658455 29.84827302325891 20.957863356117617 32 21.784483288199084 26.919027166238408 29.273872729641752 22.02261681592075 33 21.584577899909576 26.85325285468729 29.664801430835823 21.89736781456731 34 21.163755341472758 27.192532483158296 30.117356866529015 21.526355308839936 35 20.890876073919216 28.532317255211765 29.308618469473636 21.268188201395386 36 22.355909847326124 26.986953522486324 29.145884762310576 21.511251867876975 37 21.66925107670709 27.308038591248064 29.271525044517976 21.751185287526866 38 21.532576674417943 26.385359209518768 30.137664342849675 21.944399773213615 39 21.07630407061211 26.32040658776097 30.72102496802257 21.88226437360435 40 20.484413522822827 26.583190809282275 30.48907367779352 22.443321990101378 41 21.414370728435827 25.783334487611853 30.459492845233942 22.342801938718377 42 20.307241552148543 27.193275916780824 30.11903937420105 22.380443156869582 43 20.707600121923115 26.82758483066734 29.61346538279593 22.851349664613615 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1251.0 1 997.0 2 743.0 3 1135.0 4 1527.0 5 1527.0 6 2620.0 7 3713.0 8 4057.0 9 4401.0 10 6698.0 11 8995.0 12 8995.0 13 16974.5 14 24954.0 15 38377.0 16 51800.0 17 48316.5 18 44833.0 19 44833.0 20 49630.5 21 54428.0 22 47209.5 23 39991.0 24 45414.5 25 50838.0 26 50838.0 27 57237.5 28 63637.0 29 69989.5 30 76342.0 31 84369.5 32 92397.0 33 92397.0 34 102002.5 35 111608.0 36 119620.5 37 127633.0 38 133130.5 39 138628.0 40 138628.0 41 142844.5 42 147061.0 43 152384.5 44 157708.0 45 163171.0 46 168634.0 47 168634.0 48 199271.0 49 229908.0 50 216832.0 51 203756.0 52 189455.5 53 175155.0 54 175155.0 55 160205.5 56 145256.0 57 127219.5 58 109183.0 59 99159.5 60 89136.0 61 89136.0 62 79240.0 63 69344.0 64 60552.0 65 51760.0 66 44409.5 67 37059.0 68 37059.0 69 31940.5 70 26822.0 71 22975.0 72 19128.0 73 15625.0 74 12122.0 75 12122.0 76 9695.5 77 7269.0 78 5654.5 79 4040.0 80 3153.0 81 2266.0 82 2266.0 83 1717.5 84 1169.0 85 902.0 86 635.0 87 486.0 88 337.0 89 337.0 90 242.0 91 147.0 92 98.0 93 49.0 94 41.0 95 33.0 96 33.0 97 22.5 98 12.0 99 6.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2555709.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.40686690638701 #Duplication Level Percentage of deduplicated Percentage of total 1 80.54444510939199 44.62715350224876 2 11.396991052199423 12.629431327249943 3 3.435866083927999 5.711117244611033 4 1.4782102344012849 3.2761199086852453 5 0.7517015646503685 2.082471427295292 6 0.474810486976659 1.5784656874603527 7 0.30986338501310196 1.2017991532808445 8 0.2338716243529337 1.036647517096283 9 0.16679468748477255 0.8317413945145087 >10 1.0626639204397734 11.165914224440202 >50 0.0854665833960287 3.2627130899465526 >100 0.052795759230190656 5.411256861909656 >500 0.0038975322766389665 1.5541728932490746 >1k 0.0022676551427703866 2.568902556313627 >5k 1.4172844642314916E-4 0.6090184106100031 >10k+ 2.1259266963472376E-4 2.4530748010883348 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 24456 0.9569164564510279 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21433 0.8386322542981224 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16588 0.6490566805532242 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9682 0.37883812280662627 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5829 0.2280776097748218 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4671 0.1827672868859483 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4594 0.17975442431043598 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4184 0.1637119092979678 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4106 0.16065991863705922 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3599 0.14082197934115345 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2605 0.10192866245726723 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2594 0.10149825351790834 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 3.912808539626381E-5 0.0 0.0 3.912808539626381E-5 0.0 10 3.912808539626381E-5 0.0 0.0 1.1738425618879145E-4 0.0 11 7.825617079252763E-5 0.0 0.0 1.5651234158505525E-4 0.0 12 7.825617079252763E-5 0.0 0.0 1.9564042698131908E-4 0.0 13 7.825617079252763E-5 0.0 0.0 3.130246831701105E-4 0.0 14 1.1738425618879145E-4 0.0 0.0 3.9128085396263816E-4 0.0 15 1.1738425618879145E-4 0.0 0.0 5.477931955476935E-4 0.0 16 1.1738425618879145E-4 0.0 0.0 7.825617079252763E-4 0.0 17 1.1738425618879145E-4 0.0 0.0 0.0011347144764916506 0.0 18 1.1738425618879145E-4 0.0 0.0 0.001486867245058025 0.0 19 1.5651234158505525E-4 0.0 0.0 0.0023085570383795653 0.0 20 1.5651234158505525E-4 0.0 0.0 0.0036389119418525346 0.0 21 1.5651234158505525E-4 0.0 0.0 0.006573518346572321 0.0 22 1.5651234158505525E-4 0.0 0.0 0.010368942630009911 0.0 23 1.5651234158505525E-4 0.0 0.0 0.013029652436955851 0.0 24 1.5651234158505525E-4 0.0 0.0 0.017098973318167288 0.0 25 1.5651234158505525E-4 0.0 0.0 0.020620501003831032 0.0 26 1.5651234158505525E-4 0.0 0.0 0.026998378923422033 0.0 27 1.5651234158505525E-4 0.0 0.0 0.06565692729493068 0.0 28 1.5651234158505525E-4 0.0 0.0 0.14539996533251634 0.0 29 1.5651234158505525E-4 0.0 0.0 0.24560699203234798 0.0 30 1.5651234158505525E-4 0.0 0.0 0.3784859700380599 0.0 31 1.5651234158505525E-4 0.0 0.0 0.5349983116231152 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6825 0.0 23.257143 1 CATACCG 90 9.489668E-8 20.555557 5 GTATTGG 765 0.0 16.444445 1 ACGTTCG 195 1.8189894E-12 16.128204 22 CGAACTA 315 0.0 15.269841 24 TTGGACC 1050 0.0 15.15238 4 ATTGGAC 875 0.0 15.011429 3 GTATCAA 10615 0.0 14.953368 2 GGACCCT 1080 0.0 14.217593 6 GACGGTA 80 0.006301401 13.875001 7 CTTAGAC 230 4.0017767E-11 13.673913 3 TGGACCC 1140 0.0 13.631579 5 TTAGACC 165 2.59859E-7 13.454545 4 CTAATAC 545 0.0 12.899082 3 CGTTCGC 275 3.6379788E-12 12.781817 23 GACCCTC 1185 0.0 12.489452 7 GTGTTAT 285 9.094947E-12 12.333334 1 CGTATAC 105 0.0026450953 12.333333 3 TAATACT 685 0.0 12.153284 4 AATACTG 655 0.0 12.145038 5 >>END_MODULE