##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088649_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2572289 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.33341743482167 31.0 31.0 34.0 30.0 34.0 2 31.544952375102486 31.0 31.0 34.0 30.0 34.0 3 31.609483615565747 31.0 31.0 34.0 30.0 34.0 4 35.35859228881358 37.0 35.0 37.0 33.0 37.0 5 35.22896066499526 37.0 35.0 37.0 33.0 37.0 6 35.29543569948789 37.0 35.0 37.0 32.0 37.0 7 35.134214701380756 37.0 35.0 37.0 32.0 37.0 8 35.17959062920224 37.0 35.0 37.0 32.0 37.0 9 36.715862797687194 39.0 35.0 39.0 32.0 39.0 10 36.5116831740135 38.0 35.0 39.0 32.0 39.0 11 36.624203190232514 39.0 35.0 39.0 32.0 39.0 12 36.45497725955365 38.0 35.0 39.0 32.0 39.0 13 36.512543497250896 38.0 35.0 39.0 32.0 39.0 14 37.39244151804093 39.0 36.0 41.0 32.0 41.0 15 37.41810076550497 39.0 36.0 41.0 32.0 41.0 16 37.29727336236325 39.0 36.0 41.0 32.0 41.0 17 37.35646500062784 39.0 36.0 41.0 32.0 41.0 18 37.32445382303466 39.0 36.0 40.0 32.0 41.0 19 37.38454271662321 39.0 36.0 41.0 32.0 41.0 20 37.26364183806719 39.0 36.0 41.0 31.0 41.0 21 37.20738610630454 39.0 36.0 40.0 31.0 41.0 22 37.06173256581978 39.0 36.0 40.0 31.0 41.0 23 36.87599410486147 39.0 36.0 40.0 30.0 41.0 24 36.7075421929651 39.0 35.0 40.0 30.0 41.0 25 36.88800869575697 39.0 36.0 40.0 30.0 41.0 26 36.74054276171923 39.0 35.0 40.0 30.0 41.0 27 36.61077934866572 39.0 35.0 40.0 30.0 41.0 28 36.41792115893665 39.0 35.0 40.0 30.0 41.0 29 36.291392996665614 38.0 35.0 40.0 30.0 41.0 30 36.0619059522472 38.0 35.0 40.0 29.0 41.0 31 35.87905752425175 38.0 35.0 40.0 29.0 41.0 32 35.69341858554773 38.0 34.0 40.0 28.0 41.0 33 35.548061668031856 38.0 34.0 40.0 27.0 41.0 34 35.33590899000851 38.0 34.0 40.0 27.0 41.0 35 35.19716913612739 38.0 34.0 40.0 26.0 41.0 36 34.97849658417075 38.0 33.0 40.0 25.0 41.0 37 34.881786611068975 38.0 33.0 40.0 25.0 41.0 38 34.67111354906078 38.0 33.0 40.0 24.0 41.0 39 34.544909222875035 38.0 33.0 40.0 23.0 41.0 40 34.350946958137285 38.0 33.0 40.0 23.0 41.0 41 34.1997376655578 38.0 33.0 40.0 21.0 41.0 42 33.895223670435165 38.0 33.0 40.0 20.0 41.0 43 33.5203416101379 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 1.0 13 1.0 14 10.0 15 16.0 16 52.0 17 135.0 18 259.0 19 593.0 20 1328.0 21 2712.0 22 4902.0 23 8271.0 24 12894.0 25 19808.0 26 28003.0 27 38955.0 28 51503.0 29 65680.0 30 81693.0 31 99201.0 32 119091.0 33 144607.0 34 173302.0 35 209339.0 36 267618.0 37 360085.0 38 466963.0 39 415265.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.2723410938662 22.477295513840005 14.918696927133771 22.33166646516002 2 19.34063396453509 24.479753247010734 34.19048170714877 21.989131081305406 3 20.344214821895985 24.659670822368714 33.12652660723581 21.869587748499487 4 14.228844426112309 16.977680190678416 35.76052302054707 33.03295236266221 5 12.235056014312544 39.475113410662644 34.688248482188435 13.60158209283638 6 32.03555277031469 37.75536108112269 13.31910994448913 16.88997620407349 7 25.33700528984107 33.9184671706795 21.222420964362872 19.52210657511656 8 27.295727657351097 34.60447095952282 18.937840965770175 19.161960417355903 9 24.353795393907916 14.427461300032773 22.033099702249633 39.18564360380968 10 16.159148524913025 28.513436864986787 33.46105355968945 21.86636105041074 11 32.86796312544975 22.55011003818 23.65375741217258 20.92816942419767 12 20.697635452315037 27.896321136544145 31.218887146817487 20.187156264323335 13 31.882770559606637 21.176430797628104 26.530106065065006 20.410692577700253 14 20.01135953230761 23.38376442149385 28.504728667735236 28.10014737846331 15 22.224135779455576 30.191047739970124 26.015156150805762 21.569660329768546 16 21.097551635916492 28.82646545547565 27.184426011229686 22.89155689737817 17 21.233111831524372 27.200131866986954 27.65276374466477 23.913992556823903 18 22.622691307236472 25.79609056369638 30.30814189229904 21.273076236768105 19 22.16998167779748 25.011458665803104 31.820724654189327 20.997835002210095 20 23.27432881764063 24.733573871365152 31.36599347895979 20.626103832034424 21 22.034810240995473 25.520538322093667 32.115792587846855 20.328858849064005 22 20.61743451066346 25.85868073144192 31.72610076083986 21.79778399705476 23 21.716611158388503 26.14659550307139 32.30383522224758 19.83295811629253 24 21.56483972057572 26.05605357718359 30.111935322974986 22.267171379265704 25 21.407586783600134 26.559768361953108 31.162478244085328 20.870166610361434 26 21.211535717798427 27.188196971646654 30.970392518103523 20.629874792451393 27 20.02551035284138 27.249815242377508 30.873863706605288 21.850810698175827 28 20.70611039428307 26.73560396984942 30.85889649257918 21.699389143288332 29 20.886922114894553 26.487187092896637 30.338154072112427 22.287736720096383 30 21.11166358056968 26.84694449185142 31.862321846417725 20.17907008116118 31 21.817027557945472 26.644167898708115 31.497938217673056 20.04086632567336 32 21.333916989887218 26.54810559777692 30.58268336100648 21.53529405132938 33 21.023959593964754 26.470859223049974 31.14234053794111 21.362840645044162 34 20.060459769489352 27.173307509381722 31.79117898494298 20.97505373618594 35 19.739189492315987 29.019017692024494 30.664361586120375 20.57743122953914 36 21.874874868259358 26.63600396378478 30.607758303985282 20.881362863970573 37 21.022676689905374 27.44497216292571 30.538170477734035 20.99418066943489 38 20.84738534433728 25.831506490911405 31.855129808509076 21.46597835624224 39 20.315641049664325 25.775797354029816 32.53724600929367 21.37131558701219 40 19.273378691119078 26.174702764736 32.14040102025861 22.411517523886314 41 20.699890253389103 25.38653316170928 32.05883942278648 21.854737162115143 42 19.508577768672183 27.23861898876837 31.41719301369325 21.835610228866198 43 19.844348749304608 27.23550891832139 30.562934413668135 22.357207918705868 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1243.0 1 1007.0 2 771.0 3 1248.0 4 1725.0 5 1725.0 6 3074.5 7 4424.0 8 4932.5 9 5441.0 10 8505.5 11 11570.0 12 11570.0 13 22398.0 14 33226.0 15 54155.5 16 75085.0 17 68263.5 18 61442.0 19 61442.0 20 66429.0 21 71416.0 22 57918.0 23 44420.0 24 48976.0 25 53532.0 26 53532.0 27 58065.5 28 62599.0 29 66904.0 30 71209.0 31 77445.5 32 83682.0 33 83682.0 34 91631.5 35 99581.0 36 107028.0 37 114475.0 38 119786.5 39 125098.0 40 125098.0 41 128885.0 42 132672.0 43 137868.0 44 143064.0 45 154468.5 46 165873.0 47 165873.0 48 218978.0 49 272083.0 50 249571.0 51 227059.0 52 204996.0 53 182933.0 54 182933.0 55 162407.5 56 141882.0 57 121834.5 58 101787.0 59 90872.5 60 79958.0 61 79958.0 62 70599.5 63 61241.0 64 53306.0 65 45371.0 66 39237.5 67 33104.0 68 33104.0 69 28419.5 70 23735.0 71 19981.5 72 16228.0 73 13374.5 74 10521.0 75 10521.0 76 8334.5 77 6148.0 78 4855.0 79 3562.0 80 2809.5 81 2057.0 82 2057.0 83 1555.5 84 1054.0 85 785.5 86 517.0 87 392.5 88 268.0 89 268.0 90 206.5 91 145.0 92 104.0 93 63.0 94 41.5 95 20.0 96 20.0 97 12.5 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2572289.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.67321068389461 #Duplication Level Percentage of deduplicated Percentage of total 1 79.8190429356396 40.446871792644956 2 11.467107742764822 11.621503331680822 3 3.688481426100862 5.60721589225323 4 1.5903220016506223 3.223468873795 5 0.8428403273457554 2.1354712740237085 6 0.499984774621968 1.520150029389513 7 0.3416211443156143 1.2117728153984801 8 0.2629168530402037 1.0658272869162237 9 0.1806607752571745 0.8239195374230285 >10 1.130129175836342 10.905124330217904 >50 0.1047461971949279 3.687755153590856 >100 0.06298069233832113 6.094599486792894 >500 0.00392826595441588 1.4058948425223246 >1k 0.004467439712864514 4.2858325674067475 >5k 4.621489358135704E-4 1.700656581853877 >10k+ 3.080992905423803E-4 4.263936204090397 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 37912 1.4738623848253443 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 32384 1.2589565169388042 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25554 0.9934342525276125 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13395 0.5207424204667516 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8425 0.3275292939479195 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8214 0.3193264831440013 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7287 0.28328854183958335 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6952 0.2702651218428412 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6404 0.24896113928100616 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6290 0.24452928889405504 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4351 0.16914895643529945 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4004 0.1556590258715098 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 3991 0.155153639423875 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3482 0.1353658162049443 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3386 0.13163373166856446 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3365 0.13081733817623137 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3082 0.11981546397002825 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3022 0.11748291113479084 No Hit GAGTAAAATGCAGCAACGCACATGCGAGGGTCCAAAAAAAAAA 2880 0.11196253609139564 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2681 0.1042262358545249 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 2624 0.10201031066104935 No Hit TTTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2579 0.10026089603462131 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 3.8875880587290155E-5 0.0 3 0.0 0.0 0.0 3.8875880587290155E-5 0.0 4 0.0 0.0 0.0 3.8875880587290155E-5 0.0 5 0.0 0.0 0.0 3.8875880587290155E-5 0.0 6 0.0 0.0 3.8875880587290155E-5 3.8875880587290155E-5 0.0 7 0.0 0.0 3.8875880587290155E-5 3.8875880587290155E-5 0.0 8 0.0 0.0 3.8875880587290155E-5 3.8875880587290155E-5 0.0 9 3.8875880587290155E-5 0.0 3.8875880587290155E-5 1.1662764176187046E-4 0.0 10 3.8875880587290155E-5 0.0 3.8875880587290155E-5 2.3325528352374092E-4 0.0 11 3.8875880587290155E-5 0.0 3.8875880587290155E-5 3.4988292528561135E-4 0.0 12 3.8875880587290155E-5 0.0 3.8875880587290155E-5 7.386417311585129E-4 0.0 13 7.775176117458031E-5 0.0 3.8875880587290155E-5 7.386417311585129E-4 0.0 14 1.5550352234916062E-4 0.0 3.8875880587290155E-5 8.552693729203833E-4 0.0 15 1.5550352234916062E-4 0.0 3.8875880587290155E-5 0.0010107728952695439 0.0 16 1.5550352234916062E-4 0.0 3.8875880587290155E-5 0.0014384075817297356 0.0 17 1.5550352234916062E-4 0.0 3.8875880587290155E-5 0.002060421671126378 0.0 18 1.5550352234916062E-4 0.0 3.8875880587290155E-5 0.00252693223817386 0.0 19 1.5550352234916062E-4 0.0 3.8875880587290155E-5 0.003537705133443404 0.0 20 1.5550352234916062E-4 0.0 3.8875880587290155E-5 0.006220140893966424 0.0 21 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.01037986011680647 0.0 22 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.015783607518439803 0.0 23 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.019437940293645078 0.0 24 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.026202343515833563 0.0 25 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.030051055693975287 0.0 26 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.03743747300556042 0.0 27 1.9437940293645076E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.08933677358959277 0.0 28 2.3325528352374092E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.1981114874728306 0.0 29 2.3325528352374092E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.33542109770713946 0.0 30 2.3325528352374092E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.5369147867910643 0.0 31 2.3325528352374092E-4 3.8875880587290155E-5 3.8875880587290155E-5 0.7713752226130112 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8940 0.0 24.33557 1 GTATTGG 785 0.0 20.738853 1 ATTGGAC 870 0.0 18.07471 3 TTGGACC 1175 0.0 17.161703 4 TGGACCC 1190 0.0 16.789915 5 GGACCCT 1215 0.0 16.292181 6 CTAATAC 410 0.0 15.341463 3 GTATCAA 14385 0.0 15.1755295 2 TGCGACG 135 3.9774022E-7 15.074075 22 CAATGCG 170 2.440538E-8 14.147059 19 TATTGGA 1035 0.0 14.120773 2 TATACAG 320 0.0 13.875001 5 TAGTCCG 80 0.006301415 13.875001 5 TTCGTTA 240 5.456968E-12 13.874999 30 TCTAATA 510 0.0 13.784313 2 GACCCTC 1360 0.0 13.738971 7 GTGCTAG 265 1.8189894E-12 13.264152 1 CGTTCGC 295 0.0 13.169493 23 CGACGAG 155 1.8899082E-6 13.129032 24 CGCGATA 85 0.009408867 13.058824 14 >>END_MODULE