##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088646_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1735187 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.839591928708547 31.0 31.0 31.0 28.0 34.0 2 31.047720505052194 31.0 31.0 34.0 28.0 34.0 3 31.03796536050581 31.0 31.0 34.0 27.0 34.0 4 34.8309911266048 35.0 35.0 37.0 32.0 37.0 5 34.63553380701907 35.0 35.0 37.0 32.0 37.0 6 34.81928057321776 35.0 35.0 37.0 32.0 37.0 7 34.68015378169615 35.0 35.0 37.0 31.0 37.0 8 34.74893829886923 35.0 35.0 37.0 32.0 37.0 9 36.238438854140796 38.0 35.0 39.0 32.0 39.0 10 35.9033228118929 37.0 35.0 39.0 30.0 39.0 11 36.124370456901765 38.0 35.0 39.0 32.0 39.0 12 35.88699719396238 37.0 35.0 39.0 30.0 39.0 13 36.01304527984592 37.0 35.0 39.0 31.0 39.0 14 36.76057739021788 38.0 36.0 40.0 31.0 41.0 15 36.81519167674723 38.0 36.0 40.0 31.0 41.0 16 36.63069513545226 38.0 36.0 40.0 30.0 41.0 17 36.69308552911012 38.0 36.0 40.0 31.0 41.0 18 36.65951450765825 38.0 36.0 40.0 31.0 41.0 19 36.73340279750828 38.0 36.0 40.0 30.0 41.0 20 36.595976110932135 38.0 35.0 40.0 30.0 41.0 21 36.53241408562881 38.0 35.0 40.0 30.0 41.0 22 36.3640005371179 38.0 35.0 40.0 30.0 41.0 23 36.16431485482545 38.0 34.0 40.0 29.0 41.0 24 36.00622929978152 38.0 34.0 40.0 29.0 41.0 25 36.169191562638495 38.0 34.0 40.0 30.0 41.0 26 35.97568331251905 38.0 34.0 40.0 29.0 41.0 27 35.8194402101906 38.0 34.0 40.0 28.0 41.0 28 35.619130387675796 38.0 34.0 40.0 27.0 41.0 29 35.49825984173464 38.0 34.0 40.0 27.0 41.0 30 35.26874336887033 38.0 34.0 40.0 27.0 41.0 31 35.091615485823716 38.0 34.0 40.0 26.0 41.0 32 34.885712029884964 37.0 33.0 40.0 25.0 41.0 33 34.736409966188084 37.0 33.0 40.0 25.0 41.0 34 34.507904911689636 37.0 33.0 40.0 25.0 41.0 35 34.34487752616865 37.0 33.0 40.0 24.0 41.0 36 34.13016637399888 37.0 33.0 40.0 24.0 41.0 37 34.046168510944355 37.0 33.0 40.0 23.0 41.0 38 33.8071873521413 37.0 33.0 40.0 22.0 41.0 39 33.66422812065789 37.0 32.0 40.0 21.0 41.0 40 33.465756716711226 37.0 32.0 40.0 20.0 41.0 41 33.30720608211104 37.0 31.0 40.0 19.0 41.0 42 33.00476490430138 37.0 31.0 40.0 17.0 41.0 43 32.604975717314616 36.0 31.0 39.0 15.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 1.0 12 2.0 13 6.0 14 9.0 15 35.0 16 63.0 17 157.0 18 332.0 19 701.0 20 1467.0 21 2846.0 22 4885.0 23 7931.0 24 12058.0 25 17611.0 26 24385.0 27 32908.0 28 41973.0 29 53375.0 30 65978.0 31 79230.0 32 94160.0 33 112869.0 34 134921.0 35 164612.0 36 210391.0 37 264974.0 38 285339.0 39 121966.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.73997442350594 25.09671868219391 15.650071145069667 20.513235749230486 2 22.368770628180133 25.9776611973234 30.936492723838988 20.71707545065748 3 23.331433442044 25.30182625849548 31.616246548642884 19.750493750817636 4 17.384351081468452 19.112867950255506 33.44094901586976 30.06183195240628 5 12.311468446916672 40.777449346957994 33.98705730275757 12.924024903367764 6 32.15163552977287 38.320307840019545 13.176965940846722 16.35109068936086 7 25.103058056566812 33.99477981335729 21.6220499577279 19.280112172347994 8 27.462285044781915 35.4015446173813 18.807944042918717 18.328226294918068 9 24.64547048819522 14.003793251102042 21.68982363284188 39.66091262786086 10 16.25202355711517 29.289753784462423 33.50440039027494 20.95382226814747 11 33.5850833368392 22.59560496937794 23.032848909080116 20.786462784702746 12 19.86425670547324 28.46707588288755 31.536024647487558 20.132642764151644 13 31.88088661337366 21.112537150174592 26.60577793632617 20.40079830012558 14 19.75596866504878 23.375290386569286 28.789692407792362 28.079048540589575 15 22.74538709660688 30.329180658914574 25.86476270280955 21.060669541668997 16 21.00770695031717 28.571906082744974 27.885812883568168 22.534574083369687 17 21.249467636629365 27.65967011048377 28.299024831329415 22.791837421557446 18 21.978841473570284 25.807823594805633 30.447093022250627 21.766241909373456 19 22.097964081104806 25.195209507678424 32.01533898075539 20.691487430461386 20 22.76394417431666 24.947397600373908 31.822506738466807 20.46615148684263 21 21.841738095087155 25.700111861142343 32.30354999201815 20.154600051752347 22 20.634663583809697 25.939855473790434 31.993900369239743 21.431580573160126 23 21.441032004043368 26.19608145980808 32.56928503959516 19.793601496553396 24 21.412274296660822 26.314281976524722 30.565639323023973 21.707804403790483 25 21.419017085766548 26.631942263283438 31.336161462712663 20.612879188237347 26 21.144810328800297 27.188251179844013 31.31051581184045 20.356422679515234 27 20.484881456580762 27.01530152081591 30.99936779148299 21.500449231120335 28 20.609306086318075 27.063480766049995 31.432923367913663 20.894289779718267 29 20.94512003605375 26.316817726273882 30.973722140610782 21.764340097061584 30 21.153051515485075 26.705479006009153 31.961511929261803 20.17995754924397 31 21.46212483150231 26.818550392551348 31.621836724226267 20.097488051720074 32 21.133975761690238 26.65113327843051 31.077226834917504 21.13766412496175 33 20.894750825127208 26.660008402552577 31.38341861712887 21.061822155191344 34 20.349276475676685 27.13903458243982 31.87114702910983 20.640541912773667 35 19.96528328070692 28.544646772941473 30.9681319650274 20.521937981324204 36 21.936540557300162 26.675972099837082 30.606326580362808 20.78116076249995 37 21.029030300480585 27.40615276624364 30.673639210067847 20.89117772320793 38 21.084932056314393 26.026359118642546 31.638030944215235 21.25067788082783 39 20.397743874291358 26.051889508162525 32.26902921702387 21.281337400522247 40 19.663644321908823 26.48256355078732 31.76867968697322 22.08511244033064 41 20.857406147003175 25.785117108415406 31.603279646516487 21.754197098064935 42 20.183415389811014 27.05944661872179 30.844398903403498 21.912739088063706 43 20.38927216490211 26.909088184731672 30.322726023189432 22.378913627176782 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 750.0 1 611.5 2 473.0 3 647.0 4 821.0 5 821.0 6 1661.0 7 2501.0 8 2909.0 9 3317.0 10 5348.5 11 7380.0 12 7380.0 13 15356.0 14 23332.0 15 37189.5 16 51047.0 17 44910.5 18 38774.0 19 38774.0 20 44646.5 21 50519.0 22 40394.0 23 30269.0 24 32997.5 25 35726.0 26 35726.0 27 39226.0 28 42726.0 29 46364.0 30 50002.0 31 54601.5 32 59201.0 33 59201.0 34 65330.0 35 71459.0 36 76920.5 37 82382.0 38 86103.5 39 89825.0 40 89825.0 41 92147.0 42 94469.0 43 98458.5 44 102448.0 45 107685.0 46 112922.0 47 112922.0 48 141313.5 49 169705.0 50 157398.5 51 145092.0 52 131326.0 53 117560.0 54 117560.0 55 104981.0 56 92402.0 57 80584.5 58 68767.0 59 61946.0 60 55125.0 61 55125.0 62 48674.0 63 42223.0 64 36577.0 65 30931.0 66 26493.0 67 22055.0 68 22055.0 69 18649.5 70 15244.0 71 12855.5 72 10467.0 73 8480.0 74 6493.0 75 6493.0 76 5245.5 77 3998.0 78 3107.0 79 2216.0 80 1728.0 81 1240.0 82 1240.0 83 931.5 84 623.0 85 476.0 86 329.0 87 261.0 88 193.0 89 193.0 90 153.0 91 113.0 92 75.5 93 38.0 94 28.5 95 19.0 96 19.0 97 13.5 98 8.0 99 5.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1735187.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.56087535918295 #Duplication Level Percentage of deduplicated Percentage of total 1 84.74964607478289 49.6301346052023 2 9.26555926363488 10.851985223416904 3 2.451385168992783 4.306657840162079 4 1.0482508358413762 2.4554594617146472 5 0.550197314989879 1.611001819303971 6 0.3565809108973067 1.2529014167112658 7 0.2551027857699019 1.0457329708876102 8 0.17511739278762728 0.8204022249809059 9 0.13817320565812138 0.7282389487071598 >10 0.878512996788059 9.825282512657763 >50 0.07604976503485988 3.057442520560071 >100 0.048139804437449536 5.19077033005563 >500 0.0039375569647852205 1.5834970830465644 >1k 0.002854728799469285 3.208096260097723 >5k 1.9687784823926106E-4 0.8507499345298772 >10k+ 2.953167723588916E-4 3.5816468479655645 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 25105 1.446818123925548 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23335 1.3448118271978755 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 13691 0.7890215867223533 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9679 0.5578073141396287 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5079 0.2927062039999147 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4955 0.2855600001613659 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4613 0.26585030892923933 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3384 0.1950222079810418 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3289 0.18954729374989554 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3016 0.1738141191698647 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2801 0.16142352380463892 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2673 0.1540467972616208 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2132 0.12286860148214573 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2128 0.12263807877767642 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 1869 0.10771173366328815 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTCTGT 1805 0.1040233703917791 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 1793 0.10333180227837115 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.763067611732914E-5 0.0 5 0.0 0.0 0.0 5.763067611732914E-5 0.0 6 0.0 0.0 0.0 5.763067611732914E-5 0.0 7 0.0 0.0 0.0 5.763067611732914E-5 0.0 8 0.0 0.0 0.0 5.763067611732914E-5 0.0 9 0.0 0.0 0.0 1.1526135223465828E-4 0.0 10 0.0 0.0 0.0 1.1526135223465828E-4 0.0 11 5.763067611732914E-5 0.0 0.0 2.881533805866457E-4 0.0 12 5.763067611732914E-5 0.0 0.0 4.0341473282130396E-4 0.0 13 5.763067611732914E-5 0.0 0.0 4.0341473282130396E-4 0.0 14 1.1526135223465828E-4 0.0 0.0 4.0341473282130396E-4 0.0 15 1.1526135223465828E-4 0.0 0.0 6.915681134079497E-4 0.0 16 1.1526135223465828E-4 0.0 0.0 0.0013255055506985703 0.0 17 1.7289202835198744E-4 0.0 0.0 0.0016136589312852158 0.0 18 1.7289202835198744E-4 0.0 0.0 0.0018441816357545324 0.0 19 1.7289202835198744E-4 0.0 0.0 0.002823903129749128 0.0 20 1.7289202835198744E-4 0.0 0.0 0.004379931384917015 0.0 21 2.3052270446931655E-4 0.0 0.0 0.007549618571370117 0.0 22 2.3052270446931655E-4 0.0 0.0 0.012505856717460424 0.0 23 2.3052270446931655E-4 0.0 0.0 0.016655265397908122 0.0 24 2.3052270446931655E-4 0.0 0.0 0.02201491827681973 0.0 25 2.3052270446931655E-4 0.0 0.0 0.025703281548328797 0.0 26 2.3052270446931655E-4 0.0 0.0 0.03261896268240829 0.0 27 2.3052270446931655E-4 0.0 0.0 0.07169256108995745 0.0 28 2.3052270446931655E-4 0.0 0.0 0.15427731996609012 0.0 29 2.3052270446931655E-4 0.0 0.0 0.2533444522117789 0.0 30 2.3052270446931655E-4 0.0 0.0 0.3925225350351288 0.0 31 2.3052270446931655E-4 0.0 0.0 0.5419588782073632 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6710 0.0 24.538002 1 TTATGCG 155 4.0199666E-10 16.709679 4 GTATCAA 9880 0.0 16.646255 2 CGAACTA 205 0.0 16.243902 24 CCGGTCT 295 0.0 13.79661 9 TCGAACC 290 0.0 13.396551 31 TACGGCT 210 2.042725E-9 13.214287 4 TATGCGG 210 2.042725E-9 13.214287 5 GTATTGG 465 0.0 13.129033 1 ATTAGAG 255 1.6370905E-11 13.058824 3 CCGTAGG 85 0.009407255 13.058824 1 GTGCTAT 185 7.388553E-8 13.0 1 CGAACCA 115 3.578805E-4 12.869564 14 ATTGGAC 640 0.0 12.71875 3 GTATTAG 350 0.0 12.685715 1 TCACGTA 295 1.8189894E-12 12.542373 25 ACGTTCG 120 5.123785E-4 12.333333 22 TATGGGC 135 9.965716E-5 12.333333 3 CACGTAG 300 1.8189894E-12 12.333333 26 TACTCCG 410 0.0 12.182926 5 >>END_MODULE