##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088645_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1211208 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.323242580960496 31.0 31.0 34.0 30.0 34.0 2 31.53926493219992 31.0 31.0 34.0 30.0 34.0 3 31.614591383148063 31.0 31.0 34.0 30.0 34.0 4 35.36604282666561 37.0 35.0 37.0 33.0 37.0 5 35.221812438491156 37.0 35.0 37.0 33.0 37.0 6 35.2783014973481 37.0 35.0 37.0 32.0 37.0 7 35.140937807544205 37.0 35.0 37.0 32.0 37.0 8 35.169904756243355 37.0 35.0 37.0 32.0 37.0 9 36.736203855985096 39.0 35.0 39.0 32.0 39.0 10 36.503473391853426 38.0 35.0 39.0 32.0 39.0 11 36.62334793033071 38.0 35.0 39.0 32.0 39.0 12 36.461491337573726 38.0 35.0 39.0 32.0 39.0 13 36.51860456668054 38.0 35.0 39.0 32.0 39.0 14 37.458718073196344 39.0 36.0 41.0 32.0 41.0 15 37.47152264516087 39.0 36.0 41.0 32.0 41.0 16 37.35475244549244 39.0 36.0 41.0 32.0 41.0 17 37.36601888362692 39.0 36.0 41.0 32.0 41.0 18 37.32293132145759 39.0 36.0 40.0 32.0 41.0 19 37.380146102073304 39.0 36.0 41.0 32.0 41.0 20 37.249069523979365 39.0 36.0 40.0 31.0 41.0 21 37.17896017859856 39.0 36.0 40.0 31.0 41.0 22 37.035840252045894 39.0 36.0 40.0 31.0 41.0 23 36.86687257679936 39.0 36.0 40.0 30.0 41.0 24 36.72079609778007 39.0 35.0 40.0 30.0 41.0 25 36.90598724579098 39.0 36.0 40.0 31.0 41.0 26 36.77026489257006 39.0 36.0 40.0 30.0 41.0 27 36.64818511766765 39.0 35.0 40.0 30.0 41.0 28 36.476511879049674 39.0 35.0 40.0 30.0 41.0 29 36.363771540478595 39.0 35.0 40.0 30.0 41.0 30 36.17831123968798 38.0 35.0 40.0 29.0 41.0 31 36.05369680517302 38.0 35.0 40.0 29.0 41.0 32 35.86888131518286 38.0 35.0 40.0 29.0 41.0 33 35.74227135223678 38.0 34.0 40.0 28.0 41.0 34 35.565578331715116 38.0 34.0 40.0 27.0 41.0 35 35.43964207634031 38.0 34.0 40.0 27.0 41.0 36 35.255392137436345 38.0 34.0 40.0 26.0 41.0 37 35.22241596819043 38.0 34.0 40.0 25.0 41.0 38 35.024543265896526 38.0 34.0 40.0 25.0 41.0 39 34.952601039623254 38.0 33.0 40.0 24.0 41.0 40 34.80293227917913 38.0 33.0 40.0 24.0 41.0 41 34.69797095131472 38.0 33.0 40.0 24.0 41.0 42 34.4496469640227 38.0 33.0 40.0 23.0 41.0 43 34.10415882325744 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 3.0 14 1.0 15 8.0 16 20.0 17 53.0 18 123.0 19 266.0 20 613.0 21 1274.0 22 2171.0 23 3676.0 24 5763.0 25 8655.0 26 12404.0 27 17184.0 28 22780.0 29 29072.0 30 36492.0 31 44627.0 32 54889.0 33 66357.0 34 79747.0 35 97959.0 36 124809.0 37 167480.0 38 232545.0 39 202236.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.14596006631396 23.07481456529349 14.876800681633542 22.902424686759005 2 19.279595247059135 23.91521522314912 34.8345618589045 21.970627670887247 3 20.05889987516595 25.26114424607499 32.08202059431576 22.5979352844433 4 14.756590114992635 17.58294198849413 35.91175091313796 31.748716983375274 5 12.792270196365942 38.869046439587585 34.916050752637034 13.422632611409435 6 32.00515518391556 38.18196379152053 14.186498107674323 15.626382916889584 7 25.65562644896665 33.17241960092734 22.241349132436376 18.930604817669632 8 25.98265533252753 35.686934036102805 19.496898963679236 18.833511667690438 9 24.509167706950414 14.924439072397144 21.864452678648092 38.70194054200435 10 16.18078810575888 28.28382903679632 34.2082449917768 21.327137865667993 11 33.06830866374727 23.15506502599058 23.217977424191385 20.558648886070767 12 20.34910601647281 27.793657241365644 31.208182244503007 20.649054497658536 13 30.474039141088898 21.475171894505323 26.37548629137192 21.675302673033865 14 20.15335103466952 23.172403088486863 28.212495293954465 28.46175058288915 15 22.640207132053288 30.177228023592974 25.327854505584508 21.85471033876923 16 21.52297540967365 28.76136881526542 26.963824545412514 22.751831229648417 17 21.43471641534732 27.692435981268286 27.629771269674574 23.243076333709816 18 22.159529989894384 26.612852623166294 29.55867200348743 21.66894538345189 19 22.355697782709495 25.881929445644346 30.5935892101109 21.16878356153526 20 22.926037476634896 25.807375776910323 30.26119378339641 21.005392963058366 21 22.05426318188123 26.419904756243355 30.650226880932095 20.875605180943325 22 21.20544117938455 26.764106577895785 30.20546429680121 21.824987945918455 23 21.86288399680319 26.854512189483557 30.723872365440126 20.55873144827313 24 21.85165553728179 26.9447526766666 29.045382791395035 22.158208994656576 25 21.9071373372699 26.901820331437705 29.95678694328307 21.234255388009327 26 21.487473662657447 27.451436912569932 30.00137053255923 21.059718892213393 27 20.939260638965397 27.331969405750296 29.690358716256824 22.038411239027482 28 21.292461740675424 27.158258531977992 29.94159549804823 21.607684229298354 29 21.556082852821316 26.971667954637024 29.480815846658874 21.99143334588279 30 21.554101359964598 27.12762795490122 30.416245599434617 20.902025085699567 31 21.99803832207185 26.957549818032906 30.2928976691039 20.751514190791344 32 21.51191207455697 26.79226028890166 29.76004121505142 21.93578642148995 33 21.229714466879347 26.760143592182352 30.202657181920863 21.80748475901744 34 20.969560967232713 26.87152000317039 30.64609877081393 21.512820258782966 35 20.62965238010317 28.05992034398716 29.881490214727773 21.428937061181895 36 22.04765820569217 26.622182152033343 29.732217752855 21.597941889419488 37 21.253244694552876 26.715642565108556 30.054953401892988 21.976159338445587 38 21.178608463616488 26.04903534322759 30.897418114807696 21.874938078348226 39 20.638156286946586 25.9890126221095 31.513992642056525 21.85883844888739 40 19.911526343947532 26.398356021426544 31.346886744473284 22.34323089015264 41 20.75126650418425 25.605015818917977 31.31732947602724 22.326388200870536 42 19.904508556746652 27.14595676382587 30.668968500868555 22.280566178558928 43 20.160286259668034 26.84898052192522 30.254671369409714 22.736061848997036 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 570.0 1 457.0 2 344.0 3 563.5 4 783.0 5 783.0 6 1320.0 7 1857.0 8 2066.5 9 2276.0 10 3441.0 11 4606.0 12 4606.0 13 8791.0 14 12976.0 15 19788.0 16 26600.0 17 24555.0 18 22510.0 19 22510.0 20 24993.5 21 27477.0 22 23604.5 23 19732.0 24 21982.5 25 24233.0 26 24233.0 27 27009.5 28 29786.0 29 32694.0 30 35602.0 31 39501.5 32 43401.0 33 43401.0 34 48688.5 35 53976.0 36 57632.5 37 61289.0 38 64236.5 39 67184.0 40 67184.0 41 69298.5 42 71413.0 43 74299.5 44 77186.0 45 80005.5 46 82825.0 47 82825.0 48 96874.5 49 110924.0 50 103710.5 51 96497.0 52 88133.0 53 79769.0 54 79769.0 55 72671.5 56 65574.0 57 57733.0 58 49892.0 59 45406.0 60 40920.0 61 40920.0 62 36270.5 63 31621.0 64 27387.0 65 23153.0 66 19682.0 67 16211.0 68 16211.0 69 13766.0 70 11321.0 71 9536.5 72 7752.0 73 6340.0 74 4928.0 75 4928.0 76 3867.5 77 2807.0 78 2141.5 79 1476.0 80 1163.5 81 851.0 82 851.0 83 639.0 84 427.0 85 332.5 86 238.0 87 180.0 88 122.0 89 122.0 90 93.5 91 65.0 92 40.5 93 16.0 94 14.0 95 12.0 96 12.0 97 8.0 98 4.0 99 3.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1211208.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.076072168049265 #Duplication Level Percentage of deduplicated Percentage of total 1 85.84440404333294 54.14727824660449 2 8.70070039425203 10.976120119608314 3 2.223555377504543 4.207594183833916 4 0.9163775891449615 2.3120599578436236 5 0.5179084320905661 1.63338148194929 6 0.34955864143517057 1.3229271656478043 7 0.2256131613576176 0.9961554433498384 8 0.176854985428626 0.8924254259340252 9 0.12785351961356117 0.7258048047075679 >10 0.8079474202370818 9.522981679988728 >50 0.06467422526941143 2.8158668955097594 >100 0.03996596101377028 4.765811814886415 >500 0.0024896782021538648 1.0840658545012043 >1k 0.0017034640330526442 1.998364152952891 >5k 1.310356948502034E-4 0.6708876594225585 >10k+ 2.620713897004068E-4 1.9282751132596139 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 12355 1.0200560101980833 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 10975 0.9061201709367839 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 8117 0.6701573965825853 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4774 0.39415195408220555 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2299 0.18981050323313584 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2274 0.18774644817405434 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2164 0.17866460591409566 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2133 0.1761051776408346 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1825 0.15067601931295038 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1798 0.14844683984914236 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1361 0.11236715741639752 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1314 0.10848673390532428 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 8.256220236326048E-5 0.0 0.0 0.0 0.0 6 8.256220236326048E-5 0.0 0.0 0.0 0.0 7 8.256220236326048E-5 0.0 0.0 0.0 0.0 8 8.256220236326048E-5 0.0 0.0 0.0 0.0 9 8.256220236326048E-5 0.0 0.0 2.4768660708978144E-4 0.0 10 8.256220236326048E-5 0.0 0.0 4.128110118163024E-4 0.0 11 1.6512440472652096E-4 0.0 0.0 5.779354165428234E-4 0.0 12 1.6512440472652096E-4 0.0 0.0 7.430598212693443E-4 0.0 13 1.6512440472652096E-4 0.0 0.0 7.430598212693443E-4 0.0 14 1.6512440472652096E-4 0.0 0.0 0.0010733086307223862 0.0 15 1.6512440472652096E-4 0.0 0.0 0.0014861196425386886 0.0 16 1.6512440472652096E-4 0.0 0.0 0.0023117416661712934 0.0 17 1.6512440472652096E-4 0.0 0.0 0.00346761249925694 0.0 18 1.6512440472652096E-4 0.0 0.0 0.003962985713436503 0.0 19 1.6512440472652096E-4 0.0 0.0 0.0052014187488854105 0.0 20 1.6512440472652096E-4 0.0 0.0 0.009081842259958653 0.0 21 1.6512440472652096E-4 0.0 0.0 0.01560425624665623 0.0 22 1.6512440472652096E-4 0.0 0.0 0.02575940713733727 0.0 23 1.6512440472652096E-4 0.0 0.0 0.03261206993348789 0.0 24 1.6512440472652096E-4 0.0 0.0 0.043675405050164796 0.0 25 1.6512440472652096E-4 0.0 0.0 0.05019781903686237 0.0 26 1.6512440472652096E-4 0.0 0.0 0.061343716355902536 0.0 27 1.6512440472652096E-4 0.0 0.0 0.11492658568965859 0.0 28 1.6512440472652096E-4 0.0 0.0 0.2387698892345493 0.0 29 1.6512440472652096E-4 0.0 0.0 0.4026558609256214 0.0 30 1.6512440472652096E-4 0.0 0.0 0.6638001070006143 0.0 31 1.6512440472652096E-4 0.0 0.0 1.0307065343029438 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GAACCGT 40 0.0019312473 23.125 6 GGTATCA 3490 0.0 22.528654 1 TTGACGC 45 0.0038259255 20.555555 11 GTATTGG 240 0.0 19.270834 1 TCGTCCG 50 0.0070350952 18.5 10 TCTATCG 60 9.237205E-4 18.5 31 TTATGCG 135 1.1514203E-9 17.814816 4 TTAACGG 145 2.9795046E-9 16.586208 35 GTATTAG 270 0.0 16.444445 1 TATTGCG 90 4.4462748E-5 16.444445 11 TATGCGG 150 4.671165E-9 16.033333 5 TATACTG 150 4.671165E-9 16.033333 5 CGCCTAT 70 0.0025926006 15.857143 36 TAGGCGA 70 0.0025926006 15.857143 33 TATCGCC 70 0.0025926006 15.857143 33 CGATAGA 70 0.0025926006 15.857143 37 ATAGGCG 95 7.060174E-5 15.578948 32 GTATCAA 5230 0.0 15.068834 2 TCGCCTA 75 0.004104575 14.8 35 GCGCCAA 75 0.004104575 14.8 13 >>END_MODULE