##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088643_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 961970 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.677669781801928 31.0 31.0 34.0 30.0 34.0 2 31.87081717725085 31.0 31.0 34.0 30.0 34.0 3 31.95844153144069 31.0 31.0 34.0 30.0 34.0 4 35.65106500202709 37.0 35.0 37.0 33.0 37.0 5 35.552824932170445 37.0 35.0 37.0 33.0 37.0 6 35.5714866367974 37.0 35.0 37.0 33.0 37.0 7 35.44567606058401 37.0 35.0 37.0 33.0 37.0 8 35.45978149006726 37.0 35.0 37.0 33.0 37.0 9 37.07453766749483 39.0 37.0 39.0 33.0 39.0 10 36.933083152281256 39.0 37.0 39.0 33.0 39.0 11 36.98502863914675 39.0 37.0 39.0 33.0 39.0 12 36.876216514028506 39.0 37.0 39.0 33.0 39.0 13 36.916447498362736 39.0 37.0 39.0 33.0 39.0 14 37.95224591203468 40.0 37.0 41.0 33.0 41.0 15 37.905636350405935 40.0 37.0 41.0 33.0 41.0 16 37.81573749701134 40.0 37.0 41.0 32.0 41.0 17 37.83530359574623 40.0 37.0 41.0 32.0 41.0 18 37.801174672806845 40.0 37.0 41.0 32.0 41.0 19 37.81550776011726 40.0 37.0 41.0 32.0 41.0 20 37.70106760086073 40.0 37.0 41.0 32.0 41.0 21 37.59345613688576 39.0 37.0 41.0 32.0 41.0 22 37.442327723317774 39.0 36.0 41.0 32.0 41.0 23 37.31173113506658 39.0 36.0 41.0 31.0 41.0 24 37.18062517542127 39.0 36.0 41.0 31.0 41.0 25 36.98478850691809 39.0 36.0 41.0 31.0 41.0 26 37.142927534122684 39.0 36.0 41.0 31.0 41.0 27 37.077711363140224 39.0 36.0 41.0 31.0 41.0 28 36.96431905360874 39.0 36.0 41.0 31.0 41.0 29 36.821629572647794 39.0 35.0 41.0 30.0 41.0 30 36.70261858477915 39.0 35.0 40.0 30.0 41.0 31 36.53780991091198 39.0 35.0 40.0 30.0 41.0 32 36.441018950694925 39.0 35.0 40.0 30.0 41.0 33 36.25100263001965 38.0 35.0 40.0 30.0 41.0 34 36.1138382693847 38.0 35.0 40.0 29.0 41.0 35 35.93659157769993 38.0 35.0 40.0 29.0 41.0 36 35.80342630227554 38.0 35.0 40.0 28.0 41.0 37 35.647582564944855 38.0 35.0 40.0 27.0 41.0 38 35.57469359751344 38.0 35.0 40.0 27.0 41.0 39 35.45707142634386 38.0 34.0 40.0 26.0 41.0 40 35.28676569955404 38.0 34.0 40.0 25.0 41.0 41 35.17860432238012 38.0 34.0 40.0 25.0 41.0 42 34.97097310726946 38.0 34.0 40.0 24.0 41.0 43 34.62636880568001 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 3.0 14 3.0 15 7.0 16 16.0 17 16.0 18 73.0 19 139.0 20 331.0 21 672.0 22 1162.0 23 2049.0 24 3404.0 25 4989.0 26 7603.0 27 10652.0 28 14951.0 29 19692.0 30 24770.0 31 31391.0 32 38221.0 33 47274.0 34 58649.0 35 72636.0 36 94425.0 37 133502.0 38 184326.0 39 211013.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.058692059003924 20.60989427944738 13.312785221992371 24.018628439556327 2 19.09664542553302 22.472946141771573 34.932586255288626 23.49782217740678 3 19.851866482322734 24.07195650592014 32.065345073131176 24.010831938625945 4 13.831512417227149 15.852989178456708 36.328783641901516 33.98671476241463 5 13.316111729055999 37.82508810046051 34.94246182313378 13.916338347349711 6 33.05539673794401 36.90063099680863 13.846169838976266 16.19780242627109 7 26.8937700759899 32.17553561961392 21.54453881098163 19.386155493414556 8 27.152613906878592 34.20033888790711 18.967223510088672 19.679823695125627 9 24.91179558614094 14.200234934561367 21.34058234664283 39.54738713265486 10 16.708213353846794 26.75135399232824 33.62558083931931 22.91485181450565 11 34.01509402580122 22.07438901421042 23.173487738702867 20.73702922128549 12 21.152322837510525 26.388348909009636 30.769878478538832 21.689449774941004 13 31.258771063546682 20.612285206399367 25.93635976173893 22.19258396831502 14 20.96822146220776 22.22782415252035 26.98181855983035 29.822135825441542 15 23.457072465877317 29.035416904893086 24.62581993201451 22.88169069721509 16 22.780440138465856 27.787456989303198 25.92263792010146 23.509464952129484 17 22.45236337931536 26.2843955632712 26.535027079846564 24.728213977566867 18 23.350312379803945 25.447363223385345 28.617940268407537 22.584384128403173 19 23.494599623688888 24.734347224965436 29.331995800284833 22.439057351060843 20 24.247429753526617 24.495774296495732 29.107664480181295 22.149131469796355 21 23.339813091884363 25.021362412549248 29.525452976704052 22.113371518862333 22 22.403401353472564 25.54352006819339 29.02658087050532 23.026497707828728 23 22.902793226399993 25.752986059856337 29.914134536420057 21.430086177323616 24 23.01631027994636 25.765148601307736 27.745251930933396 23.47328918781251 25 23.16132519725147 25.65828456188862 28.62916722974729 22.55122301111261 26 22.823476823601567 26.364959406218492 28.66565485410148 22.145908916078465 27 22.08509620882148 26.44864184953793 28.33404368119588 23.132218260444713 28 22.403817166855518 26.09249768703806 28.584883104462715 22.91880204164371 29 22.748838321361372 26.103724648377806 28.059191035063463 23.088245995197358 30 22.4367703774546 26.26724326122436 29.426697298252545 21.869289063068496 31 22.94998804536524 25.90548561805462 29.443433786916433 21.701092549663713 32 22.49508820441386 25.78791438402445 28.45161491522605 23.265382496335647 33 22.331465638221566 25.80912086655509 29.08562637088475 22.773787124338597 34 21.834568645591858 26.275143715500484 29.439275653086895 22.451011985820763 35 21.520213728078836 27.937981433932453 28.490805326569436 22.050999511419274 36 23.198956308408786 25.976069939811016 28.512635529174506 22.312338222605693 37 22.364522802166388 26.37888915454744 28.45462956225246 22.80195848103371 38 22.19653419545308 25.246213499381476 29.65560256556857 22.90164973959687 39 21.71564601806709 25.150160607919165 30.37402413796688 22.760169236046863 40 21.02799463600736 25.79519111822614 29.936796365791036 23.240017879975465 41 21.932076883894506 24.70960632867969 30.129110055407132 23.22920673201867 42 20.72216389284489 26.44219674210214 29.74957639011612 23.08606297493685 43 21.092653617056666 26.151647140763224 29.10745657348982 23.64824266869029 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 44.0 1 95.5 2 147.0 3 423.5 4 700.0 5 700.0 6 1049.5 7 1399.0 8 1539.5 9 1680.0 10 2423.5 11 3167.0 12 3167.0 13 5877.5 14 8588.0 15 13568.0 16 18548.0 17 17229.5 18 15911.0 19 15911.0 20 16915.5 21 17920.0 22 14794.5 23 11669.0 24 13358.0 25 15047.0 26 15047.0 27 16674.5 28 18302.0 29 20108.5 30 21915.0 31 24273.5 32 26632.0 33 26632.0 34 30106.5 35 33581.0 36 37073.0 37 40565.0 38 43914.5 39 47264.0 40 47264.0 41 49395.5 42 51527.0 43 55359.0 44 59191.0 45 61381.0 46 63571.0 47 63571.0 48 79094.0 49 94617.0 50 91307.0 51 87997.0 52 82242.0 53 76487.0 54 76487.0 55 69478.0 56 62469.0 57 54641.5 58 46814.0 59 42037.0 60 37260.0 61 37260.0 62 33077.5 63 28895.0 64 25475.0 65 22055.0 66 18940.5 67 15826.0 68 15826.0 69 13505.0 70 11184.0 71 9699.5 72 8215.0 73 6801.0 74 5387.0 75 5387.0 76 4373.0 77 3359.0 78 2608.5 79 1858.0 80 1443.5 81 1029.0 82 1029.0 83 781.5 84 534.0 85 409.0 86 284.0 87 231.5 88 179.0 89 179.0 90 134.5 91 90.0 92 66.0 93 42.0 94 27.0 95 12.0 96 12.0 97 9.0 98 6.0 99 4.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 961970.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.84965856417141 #Duplication Level Percentage of deduplicated Percentage of total 1 83.76638736786553 47.62090521017277 2 9.104687163483767 10.351967131552929 3 2.6853886484225162 4.579902833247654 4 1.1978462119967104 2.723885926575963 5 0.6987359178188065 1.9861449177261044 6 0.4798550522831425 1.6367757529553564 7 0.3276596110158493 1.3039135908064174 8 0.24885290218388023 1.131776201748539 9 0.17936089201077088 0.917694492351979 >10 1.146381352203065 12.142132250126703 >50 0.10500503647882396 4.098425804179015 >100 0.05451666797535379 5.962463694434729 >500 0.0031204826361659163 1.3124348999674562 >1k 0.0016520202191466617 1.7853580904463076 >5k 5.506734063822205E-4 2.446219203708127 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 9187 0.9550193872989802 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 7655 0.7957628616277015 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6600 0.6860920818736551 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3302 0.3432539476283044 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2264 0.23535037475181136 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2093 0.21757435263053942 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2092 0.217470399284801 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1880 0.19543228998825327 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1678 0.1744337141490899 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1531 0.15915257232554028 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1203 0.12505587492333442 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1066 0.11081426655716914 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 985 0.10239404555235611 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 3.1186003721529775E-4 0.0 10 0.0 0.0 0.0 3.1186003721529775E-4 0.0 11 0.0 0.0 0.0 4.1581338295373037E-4 0.0 12 0.0 0.0 0.0 7.276734201690281E-4 0.0 13 1.0395334573843259E-4 0.0 0.0 8.316267659074607E-4 0.0 14 1.0395334573843259E-4 0.0 0.0 9.355801116458934E-4 0.0 15 1.0395334573843259E-4 0.0 0.0 0.0013513934945996236 0.0 16 2.0790669147686519E-4 0.0 0.0 0.0019751135690302193 0.0 17 2.0790669147686519E-4 0.0 0.0 0.002494880297722382 0.0 18 3.1186003721529775E-4 0.0 0.0 0.0027027869891992472 0.0 19 3.1186003721529775E-4 0.0 0.0 0.0029106936806761125 0.0 20 3.1186003721529775E-4 0.0 0.0 0.0047818539039679 0.0 21 3.1186003721529775E-4 0.0 0.0 0.009979521190889528 0.0 22 4.1581338295373037E-4 0.0 0.0 0.017360208738318242 0.0 23 4.1581338295373037E-4 0.0 0.0 0.021102529184901814 0.0 24 4.1581338295373037E-4 0.0 0.0 0.027547636620684636 0.0 25 4.1581338295373037E-4 0.0 0.0 0.03305716394482156 0.0 26 4.1581338295373037E-4 0.0 0.0 0.03991808476355811 0.0 27 4.1581338295373037E-4 0.0 0.0 0.08368244331943823 0.0 28 4.1581338295373037E-4 0.0 0.0 0.1789037080158425 0.0 29 4.1581338295373037E-4 0.0 0.0 0.3012567959499777 0.0 30 4.1581338295373037E-4 0.0 0.0 0.4673742424399929 0.0 31 5.19766728692163E-4 0.0 0.0 0.7054274041810036 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCATCG 65 2.6820908E-6 22.76923 19 GGTATCA 2480 0.0 22.080647 1 TATAGAC 80 6.957689E-7 20.8125 3 AGCCTAC 50 0.007034069 18.5 6 TAATACT 210 0.0 17.619047 4 GTATTGG 505 0.0 17.58416 1 TACACTA 85 2.7223678E-5 17.411764 5 TAAGCCG 75 2.0668253E-4 17.266666 10 ATATAAC 120 1.04064384E-7 16.958332 3 ATTAGAC 110 7.8043377E-7 16.818182 3 ACCGTTA 165 5.4569682E-11 16.818182 8 CTTAATA 80 3.3818482E-4 16.1875 2 GCGATTT 70 0.0025920807 15.857143 30 TCTATGC 70 0.0025920807 15.857143 3 CGCCGTT 190 2.7284841E-11 15.578948 25 CGTTTAT 95 7.0577626E-5 15.578948 1 GACCGTT 170 1.4842954E-9 15.235294 7 ATACTGC 110 1.4513002E-5 15.136364 6 ATAACTG 220 1.8189894E-12 15.136364 5 AATACTG 220 1.8189894E-12 15.136364 5 >>END_MODULE