##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088642_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1647076 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.543574795577133 31.0 31.0 34.0 30.0 34.0 2 31.730047672359987 31.0 31.0 34.0 30.0 34.0 3 31.806475232472575 31.0 31.0 34.0 30.0 34.0 4 35.52717543088479 37.0 35.0 37.0 33.0 37.0 5 35.41938805495314 37.0 35.0 37.0 33.0 37.0 6 35.44889064014047 37.0 35.0 37.0 33.0 37.0 7 35.31635820083591 37.0 35.0 37.0 32.0 37.0 8 35.334880721958186 37.0 35.0 37.0 32.0 37.0 9 36.921571317899115 39.0 37.0 39.0 33.0 39.0 10 36.7699590061418 39.0 37.0 39.0 32.0 39.0 11 36.824386974250125 39.0 37.0 39.0 32.0 39.0 12 36.70803047339649 39.0 35.0 39.0 32.0 39.0 13 36.754147956742734 39.0 35.0 39.0 32.0 39.0 14 37.74192872702899 40.0 37.0 41.0 32.0 41.0 15 37.70150193433697 39.0 37.0 41.0 32.0 41.0 16 37.598831505042874 39.0 36.0 41.0 32.0 41.0 17 37.628661943954015 39.0 36.0 41.0 32.0 41.0 18 37.60608314370436 39.0 36.0 41.0 32.0 41.0 19 37.62966371922121 39.0 37.0 41.0 32.0 41.0 20 37.50966197066802 39.0 36.0 41.0 32.0 41.0 21 37.406262977543236 39.0 36.0 41.0 32.0 41.0 22 37.2528438274858 39.0 36.0 41.0 31.0 41.0 23 37.112871537196824 39.0 36.0 40.0 31.0 41.0 24 36.96848779291302 39.0 36.0 40.0 31.0 41.0 25 36.75928797456827 39.0 35.0 40.0 30.0 41.0 26 36.91466271137458 39.0 36.0 40.0 31.0 41.0 27 36.84167579395243 39.0 35.0 40.0 30.0 41.0 28 36.715864355986 39.0 35.0 40.0 30.0 41.0 29 36.56636730788379 39.0 35.0 40.0 30.0 41.0 30 36.445429354808155 39.0 35.0 40.0 30.0 41.0 31 36.26188773317078 38.0 35.0 40.0 30.0 41.0 32 36.14870169925371 38.0 35.0 40.0 30.0 41.0 33 35.94772250946526 38.0 35.0 40.0 29.0 41.0 34 35.80575152573409 38.0 35.0 40.0 28.0 41.0 35 35.616907780818856 38.0 34.0 40.0 27.0 41.0 36 35.479112074974076 38.0 34.0 40.0 26.0 41.0 37 35.31436497162244 38.0 34.0 40.0 26.0 41.0 38 35.24249093545167 38.0 34.0 40.0 25.0 41.0 39 35.11114726946419 38.0 34.0 40.0 25.0 41.0 40 34.92927284472605 38.0 34.0 40.0 24.0 41.0 41 34.81138818123754 38.0 33.0 40.0 24.0 41.0 42 34.59568532356734 38.0 33.0 40.0 23.0 41.0 43 34.2328514288351 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 1.0 12 2.0 13 3.0 14 6.0 15 15.0 16 22.0 17 41.0 18 146.0 19 290.0 20 719.0 21 1371.0 22 2508.0 23 4299.0 24 6916.0 25 10592.0 26 15070.0 27 20963.0 28 28666.0 29 36951.0 30 46591.0 31 57374.0 32 69882.0 33 85548.0 34 104129.0 35 128334.0 36 166049.0 37 230635.0 38 313955.0 39 315996.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.32851185980489 21.382619866964244 13.940826045671237 23.348042227559628 2 19.143500360639095 22.962328392861046 34.951696218025155 22.942475028474703 3 19.96695963027814 24.717863656564724 32.017769671830564 23.29740704132657 4 14.185198497215673 16.37283282617196 36.01655297023331 33.42541570637906 5 13.110323992335509 38.22780491003451 34.70022026913148 13.961650828498504 6 32.700919690408945 37.197676367089315 13.72183190089589 16.379572041605854 7 26.28075450070306 32.58884228778757 21.706527203359165 19.423876008150202 8 26.736289035842915 34.785462237322385 19.067365440331837 19.41088328650287 9 24.666742761111205 14.494352416039089 21.439751414020968 39.39915340882874 10 16.67749393470611 27.057828539788087 33.444661934239825 22.820015591265978 11 33.58958542289487 22.311478037443326 23.201540183938082 20.897396355723718 12 20.955985030441827 26.840048668063893 30.820678584351906 21.38328771714238 13 31.273056009558758 20.80353304886963 26.167644965988213 21.755765975583397 14 20.739419431768784 22.50466887988168 27.313858012623584 29.442053675725955 15 23.22151497562954 29.16811367538596 25.073281378637052 22.537089970347452 16 22.250885812190816 27.97454397975564 26.19120186318057 23.583368344872973 17 22.03899516476471 26.5255519478154 26.828877355993285 24.6065755314266 18 23.150904997705023 25.415342097146702 29.031690098088976 22.4020628070593 19 23.19012601725725 24.80966269923185 29.79152145984763 22.208689823663267 20 24.001624697342443 24.522729977244524 29.6375516369615 21.838093688451536 21 23.024924168647956 25.26173655617591 29.91993083500701 21.793408440169124 22 21.967049486483926 25.607257952881348 29.6363980775629 22.78929448307182 23 22.681831318044825 25.87543015622837 30.427071974820834 21.01566655090597 24 22.74351638904337 25.883080076450632 28.274955132610756 23.09844840189524 25 22.703081096439995 25.809980838771253 29.176127877523562 22.31081018726519 26 22.485969074893934 26.465688286393586 29.23016302829985 21.81817961041263 27 21.668277602247862 26.561980139349977 28.957194446400774 22.812547812001387 28 21.994309916482297 26.161330746122218 29.208852536252124 22.63550680114336 29 22.278449810451978 26.176509159261624 28.6953971765723 22.849643853714095 30 22.128729943244878 26.293807936002956 30.019076229633608 21.558385891118565 31 22.570786047516933 25.8824122262725 29.97129458507076 21.575507141139813 32 22.263332110965127 25.778470453093842 29.063929047597075 22.89426838834395 33 22.002263404967348 25.775616911423636 29.618973259278867 22.603146424330145 34 21.49827937508652 26.16673426119985 30.044333109097575 22.290653254616057 35 21.227860766594866 27.73581789789906 29.15099242536471 21.885328910141368 36 22.815583494629273 25.686367842163932 29.18001355128725 22.318035111919546 37 21.94853182245385 26.207412408413454 29.160463755163697 22.683592013968997 38 21.800026228297906 24.938800638221917 30.479225002367833 22.781948131112348 39 21.233203568019935 24.93278998661871 31.22709577457264 22.606910670788718 40 20.463354453589268 25.57095118865189 30.771196957517443 23.1944974002414 41 21.38887337317768 24.71926007057355 30.804346611813905 23.087519944434863 42 20.2633029684119 26.4064924751499 30.278930662580233 23.051273893857964 43 20.598867326097885 26.197576796699117 29.6339695314606 23.569586345742394 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 88.0 1 173.5 2 259.0 3 715.0 4 1171.0 5 1171.0 6 1863.0 7 2555.0 8 2869.0 9 3183.0 10 4791.0 11 6399.0 12 6399.0 13 11516.5 14 16634.0 15 26163.5 16 35693.0 17 32980.0 18 30267.0 19 30267.0 20 32120.0 21 33973.0 22 27496.5 23 21020.0 24 23932.5 25 26845.0 26 26845.0 27 29623.5 28 32402.0 29 35834.5 30 39267.0 31 43342.0 32 47417.0 33 47417.0 34 52912.0 35 58407.0 36 63851.0 37 69295.0 38 74592.0 39 79889.0 40 79889.0 41 83265.5 42 86642.0 43 92989.5 44 99337.0 45 105759.0 46 112181.0 47 112181.0 48 139019.0 49 165857.0 50 157845.0 51 149833.0 52 139573.5 53 129314.0 54 129314.0 55 116804.5 56 104295.0 57 90525.5 58 76756.0 59 68739.0 60 60722.0 61 60722.0 62 53872.0 63 47022.0 64 41032.5 65 35043.0 66 30254.0 67 25465.0 68 25465.0 69 21713.5 70 17962.0 71 15314.0 72 12666.0 73 10389.5 74 8113.0 75 8113.0 76 6480.0 77 4847.0 78 3839.5 79 2832.0 80 2242.5 81 1653.0 82 1653.0 83 1248.5 84 844.0 85 645.5 86 447.0 87 337.0 88 227.0 89 227.0 90 187.5 91 148.0 92 109.0 93 70.0 94 45.5 95 21.0 96 21.0 97 15.5 98 10.0 99 7.5 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1647076.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 54.43946923501559 #Duplication Level Percentage of deduplicated Percentage of total 1 83.05964811019449 45.21723157966153 2 9.610542892191198 10.46385708222481 3 2.810562471361153 4.5901658757826445 4 1.2474107581811875 2.716335183737289 5 0.7120996946400032 1.9383164709309224 6 0.46055518657296357 1.504342794627943 7 0.32505788576224626 1.2387185140087111 8 0.2303308905747781 1.00312731450555 9 0.18553291852400636 0.9090282249063268 >10 1.1809409369955062 12.219816051933568 >50 0.10321264559533118 3.915605820403547 >100 0.06638179721172398 6.697138474421154 >500 0.004813390208791926 1.8147683246112365 >1k 0.002462664757986567 2.6551194057525715 >5k 1.119393071812076E-4 0.3755680720140715 >10k+ 3.358179215436228E-4 2.740860810478159 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 17599 1.068499571361613 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 14977 0.9093083743555245 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 12401 0.7529100053670869 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6163 0.37417824071263256 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3743 0.22725120152318415 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3599 0.21850843555488636 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3574 0.21699059424094574 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 3438 0.20873353749310902 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 3060 0.18578377682632738 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2729 0.16568755782975406 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1943 0.11796662691946212 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1803 0.10946671556139485 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1667 0.10120965881355809 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 6.071365255762333E-5 0.0 0.0 2 0.0 0.0 6.071365255762333E-5 0.0 0.0 3 0.0 0.0 6.071365255762333E-5 0.0 0.0 4 0.0 0.0 6.071365255762333E-5 0.0 0.0 5 6.071365255762333E-5 0.0 6.071365255762333E-5 0.0 0.0 6 6.071365255762333E-5 0.0 1.2142730511524665E-4 0.0 0.0 7 6.071365255762333E-5 0.0 1.2142730511524665E-4 0.0 0.0 8 1.2142730511524665E-4 0.0 1.2142730511524665E-4 0.0 0.0 9 1.2142730511524665E-4 0.0 1.2142730511524665E-4 3.035682627881166E-4 0.0 10 1.2142730511524665E-4 0.0 1.2142730511524665E-4 6.678501781338566E-4 0.0 11 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.0010321320934795965 0.0 12 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.0014571276613829598 0.0 13 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.0015785549664982066 0.0 14 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.00218569149207444 0.0 15 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.002428546102304933 0.0 16 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.003157109932996413 0.0 17 1.8214095767286998E-4 0.0 1.2142730511524665E-4 0.004432096636706503 0.0 18 2.428546102304933E-4 0.0 1.2142730511524665E-4 0.005282087772513229 0.0 19 2.428546102304933E-4 0.0 1.2142730511524665E-4 0.006921356391569059 0.0 20 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.011839162248736549 0.0 21 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.020824782827264802 0.0 22 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.0361853369243435 0.0 23 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.04504953019775651 0.0 24 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.05962080681158611 0.0 25 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.06787786355942288 0.0 26 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.07801704353654598 0.0 27 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.12998793012587154 0.0 28 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.2591258691159364 0.0 29 3.6428191534573995E-4 0.0 1.2142730511524665E-4 0.42305273102151936 0.0 30 4.857092204609866E-4 0.0 1.2142730511524665E-4 0.6638430770650534 0.0 31 5.4642287301861E-4 0.0 1.2142730511524665E-4 1.024967882477797 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 5005 0.0 22.917082 1 GTATTAG 215 0.0 19.790697 1 GTATTGG 675 0.0 17.266668 1 ATAGGAC 75 2.0679514E-4 17.266666 3 ACGTTTA 70 0.0025931327 15.857143 26 ACCGTTA 245 0.0 15.857142 8 GTTATAC 105 9.347934E-6 15.857142 3 CCGTTTA 240 0.0 15.416666 27 GTATCAA 7500 0.0 15.318001 2 CTAATAC 390 0.0 15.179487 3 CGTTTAC 245 0.0 15.10204 28 TCTAATA 385 0.0 14.896105 2 CGTTATT 125 2.9604435E-6 14.800001 10 TGTTACG 125 2.9604435E-6 14.800001 16 TAATACT 425 0.0 14.8 4 CTGAGCG 150 8.107054E-8 14.8 9 TCGGGTA 190 4.5656634E-10 14.605264 25 CTCTAAT 330 0.0 14.575757 1 GACCGTT 295 0.0 14.423729 7 GGACCGT 350 0.0 14.271429 6 >>END_MODULE