##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088641_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3427323 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.627602650815227 31.0 31.0 34.0 30.0 34.0 2 31.800758492852875 31.0 31.0 34.0 30.0 34.0 3 31.87653483491343 31.0 31.0 34.0 30.0 34.0 4 35.57180224916064 37.0 35.0 37.0 33.0 37.0 5 35.48741539679803 37.0 35.0 37.0 33.0 37.0 6 35.52452657657303 37.0 35.0 37.0 33.0 37.0 7 35.38561057711806 37.0 35.0 37.0 33.0 37.0 8 35.4174327893811 37.0 35.0 37.0 33.0 37.0 9 37.001634803606194 39.0 37.0 39.0 33.0 39.0 10 36.8755495178015 39.0 37.0 39.0 33.0 39.0 11 36.91893352333585 39.0 37.0 39.0 33.0 39.0 12 36.82033091132642 39.0 37.0 39.0 32.0 39.0 13 36.86827445210154 39.0 37.0 39.0 33.0 39.0 14 37.85638412253528 40.0 37.0 41.0 32.0 41.0 15 37.82067257740225 40.0 37.0 41.0 32.0 41.0 16 37.71535597899585 40.0 37.0 41.0 32.0 41.0 17 37.77535003266398 40.0 37.0 41.0 32.0 41.0 18 37.7630217519621 40.0 37.0 41.0 32.0 41.0 19 37.793740770858186 40.0 37.0 41.0 32.0 41.0 20 37.68211458330598 40.0 37.0 41.0 32.0 41.0 21 37.57646886505882 39.0 37.0 41.0 32.0 41.0 22 37.427183256436585 39.0 36.0 41.0 32.0 41.0 23 37.297531922144486 39.0 36.0 41.0 31.0 41.0 24 37.15054431694941 39.0 36.0 41.0 31.0 41.0 25 36.946536991115224 39.0 36.0 41.0 31.0 41.0 26 37.079543713854804 39.0 36.0 41.0 31.0 41.0 27 36.99720481553679 39.0 36.0 41.0 31.0 41.0 28 36.86527006646295 39.0 35.0 41.0 30.0 41.0 29 36.70815940020827 39.0 35.0 41.0 30.0 41.0 30 36.55931232626747 39.0 35.0 40.0 30.0 41.0 31 36.34866191485308 38.0 35.0 40.0 30.0 41.0 32 36.22181189225527 38.0 35.0 40.0 30.0 41.0 33 36.003169820877694 38.0 35.0 40.0 29.0 41.0 34 35.85139072097961 38.0 35.0 40.0 29.0 41.0 35 35.64930005138121 38.0 35.0 40.0 27.0 41.0 36 35.48286519829033 38.0 34.0 40.0 27.0 41.0 37 35.291676039871355 38.0 34.0 40.0 26.0 41.0 38 35.16787212643804 38.0 34.0 40.0 25.0 41.0 39 35.010729656936334 38.0 34.0 40.0 24.0 41.0 40 34.799278620661084 38.0 33.0 40.0 24.0 41.0 41 34.643149770243426 38.0 33.0 40.0 23.0 41.0 42 34.38217290871039 38.0 33.0 40.0 21.0 41.0 43 34.003816681415785 38.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 5.0 13 6.0 14 12.0 15 19.0 16 47.0 17 114.0 18 265.0 19 591.0 20 1263.0 21 2694.0 22 4937.0 23 8385.0 24 13821.0 25 21118.0 26 30551.0 27 43167.0 28 58204.0 29 75416.0 30 95091.0 31 115620.0 32 141381.0 33 174538.0 34 214703.0 35 263389.0 36 340281.0 37 483446.0 38 633108.0 39 705148.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.08030582469175 21.11041182870713 14.026165610886398 22.783116735714724 2 19.08938842355973 23.421311618426394 34.80042587173721 22.688874086276662 3 20.16935666699637 24.6594499555484 32.583710376874315 22.587483000580917 4 13.779675857805056 16.19179166947498 36.13187318499015 33.89665928772981 5 12.963937160285155 38.5348273273339 34.49307228994758 14.008163222433367 6 32.37325457798988 36.89961523906559 13.590490303948592 17.13663987899594 7 25.850817095441542 33.03377008820003 21.537012998191297 19.578399818167124 8 27.284151508334638 34.119457080642825 18.919576590826136 19.6768148201964 9 24.434288802076722 14.446260244511533 22.09561223147045 39.023838721941296 10 16.898319767351953 27.221507864884636 33.05113057625441 22.829041791509 11 32.99426403639225 22.458315133998166 23.5504503077183 20.996970521891285 12 21.110032523926108 27.226730599946375 30.854226461877097 20.809010414250423 13 31.596059081679783 20.7275765954945 26.459309496070254 21.217054826755458 14 20.435570268690753 23.094584315513885 27.993684867168923 28.476160548626435 15 23.024792235806196 29.26730278996173 25.73699648384468 21.970908490387394 16 21.67683057593346 28.167698229784587 26.88856579902157 23.26690539526038 17 21.701543741281462 26.540743314826177 27.300023954555787 24.457688989336575 18 22.756419514589084 25.234038344212085 29.851694748350244 22.157847392848588 19 22.725900068362392 24.767814413756742 30.91990454357526 21.5863809743056 20 23.724784620533285 24.30059845541258 30.66346533431486 21.31115158973928 21 22.498346377041205 25.28413575259758 31.185388712998453 21.032129157362757 22 21.248186996089952 25.743298778667782 30.7477877048647 22.260726520377567 23 22.020188934629157 25.907187621359295 31.70033871916945 20.3722847248421 24 22.175616362974836 26.01870322697919 29.213908347710444 22.59177206233553 25 22.09742122350301 26.100603882388672 30.269834503488585 21.532140390619734 26 21.76958518353829 26.800712976279158 30.345958055310224 21.083743784872333 27 20.8225778544946 26.86507807988917 29.956032740421605 22.356311325194618 28 21.121820149428576 26.606859055887057 30.179384901860722 22.091935892823642 29 21.51688066750639 26.5866975479113 29.596276744269506 22.300145040312806 30 21.40443138857937 26.63548197820865 31.299034260850235 20.661052372361752 31 21.957953773251017 26.368217994043746 31.00314735436374 20.670680878341493 32 21.614828832882107 26.173926414288935 29.91419250534601 22.29705224748295 33 21.211131836713378 26.252209085633304 30.548886113155955 21.987772964497367 34 20.582857232889925 26.74492599617836 31.072034938055154 21.600181832876565 35 20.302959481787973 28.56620166818243 29.971117399789865 21.159721450239736 36 22.279516695683483 26.348202372522227 29.92673874041052 21.445542191383772 37 21.27255003394778 26.883868255195086 29.925950953557628 21.917630757299502 38 21.094393496031742 25.42555808133637 31.297487864435304 22.182560558196588 39 20.5470566970198 25.418001163006814 31.95067987464269 22.084262265330697 40 19.574956897847095 26.175939647357428 31.597693009967255 22.651410444828223 41 20.831768701111624 25.04499867680986 31.65170017532634 22.471532446752175 42 19.639555419783896 26.886114906590365 31.052281912151265 22.42204776147448 43 19.876299957722104 26.71035090652384 30.330844218651116 23.082504917102938 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 211.0 1 451.0 2 691.0 3 2038.0 4 3385.0 5 3385.0 6 5227.0 7 7069.0 8 7881.0 9 8693.0 10 12777.0 11 16861.0 12 16861.0 13 30682.0 14 44503.0 15 70445.0 16 96387.0 17 87372.5 18 78358.0 19 78358.0 20 82541.0 21 86724.0 22 68026.0 23 49328.0 24 54514.0 25 59700.0 26 59700.0 27 64043.0 28 68386.0 29 73684.5 30 78983.0 31 87079.5 32 95176.0 33 95176.0 34 105425.5 35 115675.0 36 127852.5 37 140030.0 38 148927.0 39 157824.0 40 157824.0 41 164962.5 42 172101.0 43 186468.5 44 200836.0 45 214851.5 46 228867.0 47 228867.0 48 294170.0 49 359473.0 50 340159.5 51 320846.0 52 295663.5 53 270481.0 54 270481.0 55 240252.0 56 210023.0 57 180017.5 58 150012.0 59 132627.0 60 115242.0 61 115242.0 62 101372.5 63 87503.0 64 75845.0 65 64187.0 66 55318.5 67 46450.0 68 46450.0 69 40105.5 70 33761.0 71 28667.0 72 23573.0 73 19521.5 74 15470.0 75 15470.0 76 12254.0 77 9038.0 78 7145.0 79 5252.0 80 4069.5 81 2887.0 82 2887.0 83 2213.5 84 1540.0 85 1189.0 86 838.0 87 640.0 88 442.0 89 442.0 90 390.5 91 339.0 92 214.5 93 90.0 94 73.0 95 56.0 96 56.0 97 38.0 98 20.0 99 16.0 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3427323.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.17227839026078 #Duplication Level Percentage of deduplicated Percentage of total 1 77.94128487110434 33.64902848549938 2 11.785443619757814 10.17608905809814 3 4.091050265367111 5.298598828949374 4 1.87162007500416 3.232084116755215 5 1.0091061304276454 2.178270539407056 6 0.5983075775376443 1.549818078027463 7 0.41585376569379107 1.2567348179519438 8 0.30175422579436856 1.0421933953145672 9 0.2285444257930224 0.8880105217390792 >10 1.4522608753355464 12.186682446798217 >50 0.16306657197329247 4.9349532142159225 >100 0.12572259062257377 10.678342296557721 >500 0.009753562732047768 2.9045113432974987 >1k 0.005554112111142607 4.657476211725933 >5k 4.0639844715677616E-4 1.4068868459293926 >10k+ 2.709322981045174E-4 3.9603197997330275 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 47373 1.3822157993279303 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 38526 1.1240843071983586 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32381 0.944789854939263 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17153 0.5004780699105396 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9045 0.2639085957174156 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8289 0.24185056383655695 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 8228 0.2400707490948475 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7948 0.23190110765749244 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7621 0.22236013355029566 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6981 0.20368666740776986 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4987 0.14550714945746288 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4688 0.1367831394940016 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4641 0.13541180682415985 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4398 0.12832172514816959 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4250 0.12400348610271048 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4232 0.12347829486745193 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4052 0.11822638251486656 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 3786 0.11046522314937927 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 3703 0.10804350800902045 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3555 0.10372526896356137 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.9177290847696583E-5 0.0 3 0.0 0.0 0.0 2.9177290847696583E-5 0.0 4 0.0 0.0 0.0 2.9177290847696583E-5 0.0 5 0.0 0.0 0.0 2.9177290847696583E-5 0.0 6 5.8354581695393165E-5 0.0 0.0 2.9177290847696583E-5 0.0 7 5.8354581695393165E-5 0.0 0.0 5.8354581695393165E-5 0.0 8 8.753187254308975E-5 0.0 0.0 8.753187254308975E-5 0.0 9 8.753187254308975E-5 0.0 0.0 2.3341832678157266E-4 0.0 10 1.1670916339078633E-4 0.0 0.0 3.2095019932466243E-4 0.0 11 1.4588645423848292E-4 2.9177290847696583E-5 0.0 5.835458169539317E-4 0.0 12 1.4588645423848292E-4 2.9177290847696583E-5 0.0 9.336733071262906E-4 0.0 13 1.4588645423848292E-4 2.9177290847696583E-5 0.0 0.0010212051796693804 0.0 14 2.042410359338761E-4 2.9177290847696583E-5 0.0 0.001254623506450953 0.0 15 2.042410359338761E-4 2.9177290847696583E-5 0.0 0.0015463964149279189 0.0 16 2.6259561762926925E-4 5.8354581695393165E-5 0.0 0.0021299422318818506 0.0 17 2.6259561762926925E-4 5.8354581695393165E-5 0.0 0.003355388447485107 0.0 18 3.2095019932466243E-4 5.8354581695393165E-5 0.0 0.003997288846134432 0.0 19 3.793047810200556E-4 5.8354581695393165E-5 0.0 0.005018494025803812 0.0 20 3.793047810200556E-4 8.753187254308975E-5 0.0 0.008986605581090547 0.0 21 3.793047810200556E-4 1.1670916339078633E-4 0.0 0.01581409163945155 0.0 22 4.084820718677522E-4 1.1670916339078633E-4 0.0 0.02623038447207923 0.0 23 4.084820718677522E-4 1.1670916339078633E-4 0.0 0.033203756984678715 0.0 24 4.668366535631453E-4 1.1670916339078633E-4 0.0 0.042686376510180105 0.0 25 4.668366535631453E-4 1.750637450861795E-4 0.0 0.05056424503905818 0.0 26 4.96013944410842E-4 1.750637450861795E-4 0.0 0.0615057291069444 0.0 27 4.96013944410842E-4 2.042410359338761E-4 0.0 0.11948100602131752 0.0 28 5.251912352585385E-4 2.3341832678157266E-4 0.0 0.24908653196678573 0.0 29 6.127231078016282E-4 2.3341832678157266E-4 0.0 0.4202405200793739 0.0 30 6.127231078016282E-4 2.3341832678157266E-4 0.0 0.657568603834538 0.0 31 6.127231078016282E-4 2.3341832678157266E-4 0.0 0.9839166019660243 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14185 0.0 20.593233 1 ACGTTTA 170 0.0 18.5 26 GTATTGG 1645 0.0 18.331306 1 TATACCG 190 0.0 17.526316 5 ACCGTTA 685 0.0 16.474453 8 GTATTAG 710 0.0 16.15493 1 GAACCGT 150 4.6802597E-9 16.033333 6 ATTGGAC 2075 0.0 15.245783 3 TACCCCG 440 0.0 15.136364 5 TTGGACC 2560 0.0 15.03125 4 ATTAGAG 600 0.0 14.8 3 TGGACCC 2565 0.0 14.641326 5 TAATACT 835 0.0 14.622754 4 TGTTACG 495 0.0 14.575758 16 TATTGGA 2255 0.0 14.274943 2 AATACTG 870 0.0 14.034482 5 GACCGTT 795 0.0 13.729559 7 GGACCCT 2725 0.0 13.713761 6 TATACAC 1900 0.0 13.53421 37 TCTAGAC 260 1.8189894E-12 13.519231 3 >>END_MODULE