##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088640_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2215348 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.605310316934403 31.0 31.0 34.0 30.0 34.0 2 31.78082946787593 31.0 31.0 34.0 30.0 34.0 3 31.86783476004673 31.0 31.0 34.0 30.0 34.0 4 35.56018738365259 37.0 35.0 37.0 33.0 37.0 5 35.4749113908966 37.0 35.0 37.0 33.0 37.0 6 35.51456204623382 37.0 35.0 37.0 33.0 37.0 7 35.37668935083788 37.0 35.0 37.0 33.0 37.0 8 35.406629567905355 37.0 35.0 37.0 33.0 37.0 9 36.99269911544371 39.0 37.0 39.0 33.0 39.0 10 36.86472870176604 39.0 37.0 39.0 32.0 39.0 11 36.91340999247071 39.0 37.0 39.0 33.0 39.0 12 36.808795277310836 39.0 37.0 39.0 32.0 39.0 13 36.85156237304478 39.0 37.0 39.0 32.0 39.0 14 37.841580645569 40.0 37.0 41.0 32.0 41.0 15 37.80774487800562 40.0 37.0 41.0 32.0 41.0 16 37.708542856472214 40.0 37.0 41.0 32.0 41.0 17 37.755920514519616 40.0 37.0 41.0 32.0 41.0 18 37.74390163531869 40.0 37.0 41.0 32.0 41.0 19 37.768937882445556 40.0 37.0 41.0 32.0 41.0 20 37.655599932832224 39.0 37.0 41.0 32.0 41.0 21 37.541472491003674 39.0 36.0 41.0 32.0 41.0 22 37.40081964549136 39.0 36.0 41.0 32.0 41.0 23 37.25573995597983 39.0 36.0 41.0 31.0 41.0 24 37.113192148592454 39.0 36.0 41.0 31.0 41.0 25 36.92012992992523 39.0 36.0 40.0 30.0 41.0 26 37.06305329907536 39.0 36.0 41.0 31.0 41.0 27 36.98165841213209 39.0 36.0 41.0 31.0 41.0 28 36.84909097803144 39.0 35.0 41.0 30.0 41.0 29 36.70020872567199 39.0 35.0 40.0 30.0 41.0 30 36.56757087374083 39.0 35.0 40.0 30.0 41.0 31 36.36475713973606 38.0 35.0 40.0 30.0 41.0 32 36.234153279755596 38.0 35.0 40.0 30.0 41.0 33 36.02438623638363 38.0 35.0 40.0 29.0 41.0 34 35.865100200961656 38.0 35.0 40.0 29.0 41.0 35 35.669955239537984 38.0 35.0 40.0 27.0 41.0 36 35.51032704568311 38.0 34.0 40.0 27.0 41.0 37 35.3329345998913 38.0 34.0 40.0 26.0 41.0 38 35.237146488948916 38.0 34.0 40.0 25.0 41.0 39 35.08148832598761 38.0 34.0 40.0 24.0 41.0 40 34.88581793921316 38.0 34.0 40.0 24.0 41.0 41 34.75117272771592 38.0 33.0 40.0 23.0 41.0 42 34.50611958030973 38.0 33.0 40.0 22.0 41.0 43 34.13436308877883 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 1.0 14 11.0 15 17.0 16 24.0 17 75.0 18 152.0 19 415.0 20 853.0 21 1697.0 22 3076.0 23 5390.0 24 8637.0 25 13452.0 26 19618.0 27 27425.0 28 37511.0 29 48701.0 30 61542.0 31 74766.0 32 90845.0 33 112438.0 34 138203.0 35 169908.0 36 220839.0 37 313746.0 38 418101.0 39 447902.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.80801391022991 21.351859843239076 14.053051710160211 22.78707453637081 2 18.850311553760402 23.435279694206056 35.053454355703934 22.660954396329604 3 20.084338893934497 24.913602738711933 32.34241302043742 22.65964534691615 4 13.92106341757593 16.24516780207895 36.19544198022162 33.6383268001235 5 12.983693758271839 38.476663711525234 34.58648483217986 13.953157698023064 6 32.40280985199617 37.00402826102265 13.81385678457741 16.77930510240378 7 25.761460501916627 32.920426045930476 21.91429969467551 19.40381375747738 8 26.99458504939179 34.396808086133646 19.27390188810065 19.334704976373914 9 24.373777844383817 14.54137228101409 22.088809523379624 38.99604035122247 10 16.628583861316596 27.184216655803063 33.4226947639829 22.764504718897438 11 32.82978565895742 22.424693547018347 23.77314986178244 20.972370932241795 12 20.806211936002832 26.977296569207187 31.32379201822919 20.892699476560793 13 31.374032431924913 20.819031592327704 26.65251689576536 21.154419079982016 14 20.414535323569933 22.747803053967143 28.06421383908984 28.773447783373086 15 22.81307496610013 29.209180679514006 25.800867403225137 22.17687695116072 16 21.681559736890097 28.13187815187501 26.889454839600823 23.297107271634072 17 21.571012770905522 26.38492913980106 27.536621785832295 24.507436303461127 18 22.9210038332578 25.265375913851912 29.818746309834843 21.99487394305545 19 22.763150529849035 24.66817854350648 30.761577864967492 21.80709306167699 20 23.658675747557496 24.348589928083534 30.588557644216618 21.404176680142353 21 22.530545990968463 25.217618180078254 30.98023425664952 21.271601572303762 22 21.48294534312442 25.48195588232639 30.76365428817504 22.27144448637415 23 22.06678138152561 25.801183380669762 31.583390058807915 20.548645178996708 24 22.245895452994294 25.786512999312073 29.344735003259082 22.62285654443455 25 22.172678965110673 25.839010394755135 30.191419135955165 21.79689150417903 26 22.049854018420582 26.52540368375533 30.153140725520323 21.271601572303762 27 21.06910516993267 26.691607819629244 29.916654178034328 22.32263283240376 28 21.41821510661079 26.278083623882114 30.13165425928567 22.17204701022142 29 21.66752131042166 26.182071620350396 29.651910219071674 22.498496850156275 30 21.54591513387513 26.333153978517142 31.048981920673413 21.071948966934315 31 22.062989652190083 25.915522075989866 31.07520804857747 20.946280223242578 32 21.762585381619502 25.83630201665833 29.997408984954056 22.403703616768112 33 21.482313388235166 25.835128386149712 30.507396580582373 22.175161645032745 34 20.853202295982392 26.438961282832313 30.91577485794557 21.792061563239727 35 20.561284276781798 28.185729736366476 29.933987797853884 21.318998188997845 36 22.25596159158742 25.9621964585248 30.04507643945782 21.736765510429965 37 21.561623726836597 26.459860933812656 29.835538254035033 22.142977085315714 38 21.292681781823894 25.11275880809697 31.177629880271635 22.416929529807504 39 20.759266715658217 24.99444782490155 31.94378490422272 22.30250055521751 40 19.945985912822724 25.690862112859918 31.437047362310572 22.92610461200678 41 21.10183140526906 24.740492238691168 31.474603538586265 22.68307281745351 42 19.827449231452576 26.629631100847362 30.852714787924967 22.6902048797751 43 20.208969426022456 26.447266975662515 30.076313066840964 23.26745053147406 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 125.0 1 281.0 2 437.0 3 1252.5 4 2068.0 5 2068.0 6 3305.0 7 4542.0 8 5023.5 9 5505.0 10 7907.5 11 10310.0 12 10310.0 13 18640.5 14 26971.0 15 41919.0 16 56867.0 17 52266.0 18 47665.0 19 47665.0 20 50364.5 21 53064.0 22 42225.0 23 31386.0 24 35097.0 25 38808.0 26 38808.0 27 41595.0 28 44382.0 29 48535.0 30 52688.0 31 57293.5 32 61899.0 33 61899.0 34 67974.5 35 74050.0 36 82614.0 37 91178.0 38 97354.5 39 103531.0 40 103531.0 41 108330.0 42 113129.0 43 122470.5 44 131812.0 45 141889.0 46 151966.0 47 151966.0 48 192859.0 49 233752.0 50 220406.5 51 207061.0 52 191826.0 53 176591.0 54 176591.0 55 156805.5 56 137020.0 57 117415.5 58 97811.0 59 86669.5 60 75528.0 61 75528.0 62 66201.0 63 56874.0 64 49142.5 65 41411.0 66 35469.5 67 29528.0 68 29528.0 69 25325.0 70 21122.0 71 17767.5 72 14413.0 73 11949.0 74 9485.0 75 9485.0 76 7503.5 77 5522.0 78 4336.5 79 3151.0 80 2435.5 81 1720.0 82 1720.0 83 1307.5 84 895.0 85 702.5 86 510.0 87 389.0 88 268.0 89 268.0 90 231.5 91 195.0 92 127.5 93 60.0 94 42.5 95 25.0 96 25.0 97 18.5 98 12.0 99 11.5 100 11.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2215348.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.116726362410716 #Duplication Level Percentage of deduplicated Percentage of total 1 80.54066031971138 39.55893573971135 2 10.7676647652217 10.577448876711314 3 3.381781245573189 4.983060721690524 4 1.5266584390465456 2.9993785919805704 5 0.8095438224518858 1.988107120287464 6 0.5303798538523444 1.563031328988059 7 0.3659035754351217 1.2580390052772206 8 0.2665864581074709 1.047508329183113 9 0.2095933420391742 0.9265084945489147 >10 1.3695380082243465 12.771621327590513 >50 0.13413357541295204 4.565047014362281 >100 0.087425499993505 7.9191600747936794 >500 0.005802354369211276 1.972194387456055 >1k 0.0035919336571307893 3.1824179452148873 >5k 3.684034520134143E-4 0.9936743793118723 >10k+ 3.684034520134143E-4 3.693866662892208 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 28147 1.2705453048460107 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 23340 1.053559079657011 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 19907 0.8985947128848379 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10262 0.46322293382348956 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5820 0.2627126753900516 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5751 0.2595980405787262 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5238 0.23644140785104642 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5157 0.23278509742036013 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4491 0.20272210054582845 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4143 0.18701350758436147 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2956 0.13343276090257603 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2854 0.1288285181380081 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2654 0.11980059114865926 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2576 0.11627969962281322 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2558 0.11546718619377182 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2506 0.11311992517654111 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2495 0.11262338919212692 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2489 0.11235255138244646 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2483 0.11208171357276599 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2248 0.1014738993602811 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 4.513963494674426E-5 0.0 0.0 0.0 0.0 7 4.513963494674426E-5 0.0 0.0 4.513963494674426E-5 0.0 8 4.513963494674426E-5 0.0 0.0 4.513963494674426E-5 0.0 9 4.513963494674426E-5 0.0 0.0 2.7083780968046553E-4 0.0 10 1.3541890484023277E-4 0.0 0.0 4.062567145206983E-4 0.0 11 1.3541890484023277E-4 0.0 0.0 7.673737940946524E-4 0.0 12 1.3541890484023277E-4 0.0 0.0 0.0015347475881893047 0.0 13 1.3541890484023277E-4 0.0 0.0 0.0016701664930295376 0.0 14 1.8055853978697704E-4 0.0 0.0 0.00212156284249698 0.0 15 2.256981747337213E-4 0.0 0.0 0.002843797001644888 0.0 16 2.256981747337213E-4 0.0 0.0 0.003836868970473262 0.0 17 2.7083780968046553E-4 0.0 0.0 0.005281337288769079 0.0 18 2.7083780968046553E-4 0.0 0.0 0.006500107432331173 0.0 19 3.1597744462720983E-4 0.0 0.0 0.008215413560307454 0.0 20 3.1597744462720983E-4 0.0 0.0 0.015302336246946303 0.0 21 3.1597744462720983E-4 0.0 0.0 0.025368474840070272 0.0 22 3.1597744462720983E-4 0.0 0.0 0.04175416232573844 0.0 23 3.1597744462720983E-4 0.0 0.0 0.05416756193609311 0.0 24 3.1597744462720983E-4 0.0 0.0 0.07366788423308664 0.0 25 3.1597744462720983E-4 0.0 0.0 0.08553960822408037 0.0 26 3.1597744462720983E-4 0.0 0.0 0.10007457067693203 0.0 27 3.1597744462720983E-4 0.0 0.0 0.15636369545552212 0.0 28 3.1597744462720983E-4 0.0 0.0 0.2884422673096958 0.0 29 3.1597744462720983E-4 0.0 0.0 0.4578061776298803 0.0 30 4.062567145206983E-4 0.0 0.0 0.700206017293897 0.0 31 5.416756193609311E-4 0.0 0.0 1.0485485801779224 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7985 0.0 21.523481 1 TGCTACG 45 0.0038269123 20.555555 2 CTAACGG 55 5.145163E-4 20.181818 27 CTCTAAT 330 0.0 17.378788 1 GTATTGG 1270 0.0 16.751968 1 ATAACGC 100 5.8827427E-6 16.650002 3 CTCGTAT 80 3.3843366E-4 16.1875 9 TCGTATG 85 5.366939E-4 15.235294 10 TCTAACG 100 1.094091E-4 14.8 2 TGGACCC 1685 0.0 14.712166 5 TTGGACC 1735 0.0 14.608069 4 ATTGGAC 1485 0.0 14.575757 3 TATTGGA 1525 0.0 14.557377 2 TAGAACA 220 1.8189894E-11 14.295454 4 CAATGCG 185 4.9058144E-9 14.0 19 GTATCAA 12385 0.0 13.891805 2 TAGATGT 400 0.0 13.875001 4 CCTATCG 80 0.0063010524 13.875001 13 CAATACT 270 0.0 13.703704 4 GGACCCT 1890 0.0 13.605821 6 >>END_MODULE