##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088631_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3466964 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.752925037583314 31.0 31.0 34.0 30.0 34.0 2 31.936356420199346 31.0 31.0 34.0 30.0 34.0 3 32.01933074586295 33.0 31.0 34.0 30.0 34.0 4 35.69418776774146 37.0 35.0 37.0 35.0 37.0 5 35.60306019906754 37.0 35.0 37.0 33.0 37.0 6 35.6311314452645 37.0 35.0 37.0 33.0 37.0 7 35.50698247804131 37.0 35.0 37.0 33.0 37.0 8 35.5244799196069 37.0 35.0 37.0 33.0 37.0 9 37.14509524759992 39.0 37.0 39.0 33.0 39.0 10 37.00566028375258 39.0 37.0 39.0 33.0 39.0 11 37.05454368721452 39.0 37.0 39.0 33.0 39.0 12 36.96233563428983 39.0 37.0 39.0 33.0 39.0 13 37.00500207097622 39.0 37.0 39.0 33.0 39.0 14 38.06167644082834 40.0 37.0 41.0 33.0 41.0 15 38.02417388816267 40.0 37.0 41.0 33.0 41.0 16 37.93109908265561 40.0 37.0 41.0 33.0 41.0 17 37.94456648525915 40.0 37.0 41.0 33.0 41.0 18 37.91777503314139 40.0 37.0 41.0 33.0 41.0 19 37.94071268118157 40.0 37.0 41.0 33.0 41.0 20 37.81770794274183 40.0 37.0 41.0 32.0 41.0 21 37.714520254608935 40.0 37.0 41.0 32.0 41.0 22 37.55976641234233 39.0 36.0 41.0 32.0 41.0 23 37.44286240064795 39.0 36.0 41.0 32.0 41.0 24 37.303693952403314 39.0 36.0 41.0 31.0 41.0 25 37.10817101071716 39.0 36.0 41.0 31.0 41.0 26 37.2657330736633 39.0 36.0 41.0 31.0 41.0 27 37.20134475004644 39.0 36.0 41.0 31.0 41.0 28 37.087466440378385 39.0 36.0 41.0 31.0 41.0 29 36.94162558365186 39.0 36.0 41.0 31.0 41.0 30 36.82142791214446 39.0 35.0 41.0 30.0 41.0 31 36.653075428530556 39.0 35.0 40.0 30.0 41.0 32 36.53191005156096 39.0 35.0 40.0 30.0 41.0 33 36.336501907720994 39.0 35.0 40.0 30.0 41.0 34 36.205139424580125 38.0 35.0 40.0 30.0 41.0 35 36.02745687581411 38.0 35.0 40.0 29.0 41.0 36 35.89271102901559 38.0 35.0 40.0 28.0 41.0 37 35.72915813374468 38.0 35.0 40.0 27.0 41.0 38 35.64690778444772 38.0 35.0 40.0 27.0 41.0 39 35.5199967464329 38.0 35.0 40.0 26.0 41.0 40 35.357391942921815 38.0 34.0 40.0 25.0 41.0 41 35.23019535247554 38.0 34.0 40.0 25.0 41.0 42 35.0253821499156 38.0 34.0 40.0 24.0 41.0 43 34.66816528813106 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 4.0 12 4.0 13 3.0 14 6.0 15 21.0 16 47.0 17 99.0 18 214.0 19 533.0 20 1103.0 21 2314.0 22 4259.0 23 7293.0 24 11672.0 25 18234.0 26 26537.0 27 38005.0 28 51610.0 29 67681.0 30 85380.0 31 106728.0 32 131894.0 33 164882.0 34 205310.0 35 256663.0 36 335719.0 37 476378.0 38 666772.0 39 807598.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.008310441066016 20.8477503660263 13.455057508529075 23.68888168437861 2 18.9834679564022 22.81289912442125 34.95386741829451 23.249765500882038 3 19.87586257024878 24.590419744768045 31.939010615627968 23.594707069355206 4 13.86083039800817 16.215541897752615 36.34136379841267 33.58226390582654 5 13.3254051671722 37.99078963611967 34.808379896647324 13.875425300060803 6 32.70094526507919 37.09755855555466 14.06752420850058 16.133971970865577 7 26.492631593521015 32.30950768453321 21.94597347996691 19.25188724197886 8 26.777318714587174 34.6056953576674 19.23212932121591 19.384856606529517 9 24.880616008703868 14.433117851815016 21.524682690676915 39.1615834488042 10 16.66152287707631 27.11879904146683 33.56660178761591 22.65307629384095 11 33.562044486184455 22.501704661484805 23.248957877843555 20.687292974487185 12 20.878959227727776 26.788510062406186 30.990832324765993 21.341698385100045 13 30.952672136197553 20.79462030756593 26.12680720076701 22.12590035546951 14 20.72438594689763 22.59083163251767 27.507381097698158 29.17740132288654 15 23.519252002616696 29.041374528261617 24.969973729176306 22.46939973994538 16 22.331382731404194 27.878253134442698 26.36283503376441 23.427529100388696 17 22.081221495233294 26.690787674749433 27.10847300404619 24.11951782597108 18 22.9025164380132 25.576037132199815 28.983023763731037 22.53842266605595 19 23.105547101152478 25.14107443861546 29.84213277092003 21.911245689312032 20 23.76987473766673 24.844446034051696 29.484903794789908 21.900775433491663 21 22.736636434644257 25.641252692557526 29.85626617409353 21.76584469870469 22 22.01392918991948 25.931968142732376 29.516689530090307 22.537413137257843 23 22.484138860397742 26.00782702099012 30.199102153930646 21.30893196468149 24 22.573900392389422 26.21529961084107 28.375143208870927 22.835656787898575 25 22.64370209785853 26.000818006763264 29.224329990158537 22.13114990521967 26 22.339747398588507 26.693181700184947 29.20298566699856 21.764085234227988 27 21.73218412420781 26.71916985581621 28.873590842016245 22.675055177959734 28 21.95304018155366 26.424675883568447 29.14593286806555 22.47635106681235 29 22.220940280891295 26.48726666905108 28.811807679572098 22.47998537048553 30 22.0843654563474 26.51230298324413 29.932644238590306 21.470687321818165 31 22.387224095779477 26.24809487493957 29.828374335585835 21.536306693695117 32 22.07490472932514 26.096550180503748 29.07442938547963 22.754115704691483 33 21.882027041526822 26.13447961963262 29.541783531643244 22.441709807197306 34 21.500280937442675 26.36121978768744 29.908675140555253 22.229824134314633 35 21.294423593668697 27.78272286646184 29.097042830557225 21.82581070931224 36 22.7204551301946 26.09929033009861 29.114118289085205 22.066136250621582 37 21.857942568771985 26.321069385202733 29.168661687862922 22.65232635816236 38 21.8095140301428 25.294378597527984 30.319870641864178 22.57623673046504 39 21.149224508820975 25.30750247190337 30.912579421072735 22.63069359820292 40 20.634105228666925 25.835168752833894 30.62405609057377 22.906669927925414 41 21.367542322331584 24.89769146723185 30.74831466378076 22.986451546655807 42 20.378204100186792 26.481122965222596 30.21231255934587 22.92836037524474 43 20.667131242204995 26.04777551771521 29.80143433851635 23.48365890156344 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 176.0 1 423.0 2 670.0 3 1797.0 4 2924.0 5 2924.0 6 4488.5 7 6053.0 8 6496.0 9 6939.0 10 10151.0 11 13363.0 12 13363.0 13 24082.5 14 34802.0 15 53324.5 16 71847.0 17 66425.5 18 61004.0 19 61004.0 20 65986.0 21 70968.0 22 58095.0 23 45222.0 24 51489.0 25 57756.0 26 57756.0 27 64110.5 28 70465.0 29 77867.0 30 85269.0 31 94384.5 32 103500.0 33 103500.0 34 115701.5 35 127903.0 36 141774.5 37 155646.0 38 166083.5 39 176521.0 40 176521.0 41 182947.0 42 189373.0 43 203146.0 44 216919.0 45 225663.0 46 234407.0 47 234407.0 48 281454.0 49 328501.0 50 315427.5 51 302354.0 52 283329.5 53 264305.0 54 264305.0 55 239532.0 56 214759.0 57 187958.0 58 161157.0 59 144154.0 60 127151.0 61 127151.0 62 112809.5 63 98468.0 64 86521.0 65 74574.0 66 64195.0 67 53816.0 68 53816.0 69 46722.5 70 39629.0 71 33591.0 72 27553.0 73 22912.5 74 18272.0 75 18272.0 76 14619.0 77 10966.0 78 8541.0 79 6116.0 80 4838.0 81 3560.0 82 3560.0 83 2726.5 84 1893.0 85 1448.5 86 1004.0 87 761.0 88 518.0 89 518.0 90 462.5 91 407.0 92 271.5 93 136.0 94 97.0 95 58.0 96 58.0 97 44.0 98 30.0 99 20.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3466964.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.27176318426919 #Duplication Level Percentage of deduplicated Percentage of total 1 77.55247938874894 35.88489960629108 2 12.202066467563775 11.292222598916462 3 4.105775208600353 5.69944374420597 4 1.8588512554529737 3.440493003484059 5 1.0171841223796811 2.3533451412775652 6 0.6118404157889471 1.6986560895570575 7 0.4330566659578306 1.4026806844798936 8 0.2986519543127887 1.1055322003584434 9 0.23139051934334265 0.9636162582726191 >10 1.4265350709827742 12.553930326580872 >50 0.14658963051796645 4.748065658044931 >100 0.10279101034339574 9.31765475463565 >500 0.008359174932094962 2.6736108575040305 >1k 0.003867677952825558 3.0547759046553153 >5k 3.119095123246418E-4 0.8507153564902007 >10k+ 2.495276098597134E-4 2.960357815245725 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 35023 1.0101922027456876 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29901 0.8624548740627246 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 24262 0.699805362847725 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13372 0.38569768823673967 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6481 0.18693588972945782 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6013 0.17343704751477085 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5927 0.17095649103942237 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5823 0.1679567483250475 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5228 0.15079475875722967 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4671 0.1347288290273565 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3617 0.1043275903643649 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3487 0.1005779119713963 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.884367994591233E-5 0.0 0.0 0.0 0.0 3 2.884367994591233E-5 0.0 0.0 0.0 0.0 4 2.884367994591233E-5 0.0 0.0 0.0 0.0 5 2.884367994591233E-5 0.0 0.0 0.0 2.884367994591233E-5 6 2.884367994591233E-5 0.0 0.0 0.0 2.884367994591233E-5 7 2.884367994591233E-5 0.0 0.0 0.0 8.653103983773699E-5 8 5.768735989182466E-5 0.0 0.0 2.884367994591233E-5 8.653103983773699E-5 9 5.768735989182466E-5 0.0 0.0 4.0381151924277265E-4 8.653103983773699E-5 10 1.1537471978364932E-4 0.0 0.0 4.3265519918868497E-4 8.653103983773699E-5 11 2.0190575962138633E-4 0.0 0.0 5.768735989182466E-4 8.653103983773699E-5 12 2.0190575962138633E-4 0.0 0.0 8.364667184314576E-4 8.653103983773699E-5 13 2.0190575962138633E-4 0.0 0.0 8.941540783232823E-4 8.653103983773699E-5 14 2.884367994591233E-4 0.0 0.0 9.806851181610192E-4 8.653103983773699E-5 15 2.884367994591233E-4 0.0 0.0 0.001211434557728318 1.1537471978364932E-4 16 2.884367994591233E-4 0.0 0.0 0.0015575587170792659 1.1537471978364932E-4 17 3.1728047940503566E-4 0.0 0.0 0.0023651817555648113 1.1537471978364932E-4 18 3.1728047940503566E-4 0.0 0.0 0.0027113059149157593 1.1537471978364932E-4 19 3.1728047940503566E-4 0.0 0.0 0.003720834713022691 1.1537471978364932E-4 20 3.1728047940503566E-4 0.0 0.0 0.006287922228208888 1.1537471978364932E-4 21 3.4612415935094797E-4 0.0 2.884367994591233E-5 0.01113366045912216 1.1537471978364932E-4 22 3.749678392968603E-4 0.0 2.884367994591233E-5 0.01952717132338265 1.1537471978364932E-4 23 3.749678392968603E-4 0.0 2.884367994591233E-5 0.02486325211337643 1.1537471978364932E-4 24 3.749678392968603E-4 0.0 2.884367994591233E-5 0.032218390499584075 1.1537471978364932E-4 25 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.037785220729145155 1.1537471978364932E-4 26 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.04727479143135031 1.1537471978364932E-4 27 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.09832810493561514 1.1537471978364932E-4 28 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.21136648664364557 1.1537471978364932E-4 29 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.35422923341574936 1.1537471978364932E-4 30 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.5483760431316852 1.1537471978364932E-4 31 4.0381151924277265E-4 0.0 2.884367994591233E-5 0.8460428201735005 1.1537471978364932E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11230 0.0 20.70748 1 GTATTAG 800 0.0 17.80625 1 GTTATCG 195 0.0 17.076923 11 GTATTGG 1530 0.0 15.598039 1 TTAACGG 450 0.0 15.211111 35 ATTAGAG 610 0.0 14.557376 3 TATACAG 435 0.0 14.45977 5 GGACCGT 845 0.0 14.23077 6 TAAACGT 200 9.858923E-10 13.874999 4 GTATCAA 16840 0.0 13.809085 2 CGAATTA 230 4.0017767E-11 13.673913 15 ACCGTTA 660 0.0 13.454545 8 TACCCCG 400 0.0 13.412499 5 GACCGTT 720 0.0 13.361111 7 ATTGGAC 1750 0.0 13.320001 3 CGGAATA 85 0.00940973 13.058824 28 TCTAACG 170 3.737532E-7 13.058824 2 TCTATAC 370 0.0 13.0 3 TTGGACC 2070 0.0 12.869565 4 TGGACCC 1995 0.0 12.796992 5 >>END_MODULE