##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088630_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3148517 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.781291319055924 31.0 31.0 34.0 30.0 34.0 2 31.96058366526209 31.0 31.0 34.0 30.0 34.0 3 32.04748013112205 33.0 31.0 34.0 30.0 34.0 4 35.71065171317163 37.0 35.0 37.0 35.0 37.0 5 35.62568155102863 37.0 35.0 37.0 33.0 37.0 6 35.66387985200652 37.0 35.0 37.0 33.0 37.0 7 35.54172901083272 37.0 35.0 37.0 33.0 37.0 8 35.5641160584491 37.0 35.0 37.0 33.0 37.0 9 37.19454524145812 39.0 37.0 39.0 33.0 39.0 10 37.06790752598763 39.0 37.0 39.0 33.0 39.0 11 37.110870292267755 39.0 37.0 39.0 33.0 39.0 12 37.02198177745269 39.0 37.0 39.0 33.0 39.0 13 37.067924676919326 39.0 37.0 39.0 33.0 39.0 14 38.14016027228057 40.0 37.0 41.0 33.0 41.0 15 38.098837008026315 40.0 37.0 41.0 33.0 41.0 16 38.006765089723196 40.0 37.0 41.0 33.0 41.0 17 38.02248804754746 40.0 37.0 41.0 33.0 41.0 18 37.99923519549045 40.0 37.0 41.0 33.0 41.0 19 38.019275423953566 40.0 37.0 41.0 33.0 41.0 20 37.90460651792574 40.0 37.0 41.0 32.0 41.0 21 37.81098212269459 40.0 37.0 41.0 32.0 41.0 22 37.65829912939965 39.0 37.0 41.0 32.0 41.0 23 37.53558929489661 39.0 36.0 41.0 32.0 41.0 24 37.40485091870236 39.0 36.0 41.0 32.0 41.0 25 37.217919738086216 39.0 36.0 41.0 31.0 41.0 26 37.38052263970625 39.0 36.0 41.0 32.0 41.0 27 37.31481773800173 39.0 36.0 41.0 31.0 41.0 28 37.206780843171565 39.0 36.0 41.0 31.0 41.0 29 37.06463042759496 39.0 36.0 41.0 31.0 41.0 30 36.9443169593812 39.0 36.0 41.0 31.0 41.0 31 36.77332693455363 39.0 35.0 41.0 30.0 41.0 32 36.651280269409376 39.0 35.0 40.0 30.0 41.0 33 36.45642821683987 39.0 35.0 40.0 30.0 41.0 34 36.32293997459757 39.0 35.0 40.0 30.0 41.0 35 36.128198450254516 38.0 35.0 40.0 30.0 41.0 36 35.97653974871344 38.0 35.0 40.0 29.0 41.0 37 35.81984439023197 38.0 35.0 40.0 28.0 41.0 38 35.73886753668473 38.0 35.0 40.0 27.0 41.0 39 35.6132671349718 38.0 35.0 40.0 26.0 41.0 40 35.434681788283186 38.0 35.0 40.0 25.0 41.0 41 35.31163719300229 38.0 34.0 40.0 25.0 41.0 42 35.107161562094156 38.0 34.0 40.0 24.0 41.0 43 34.751696115980955 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 3.0 13 3.0 14 3.0 15 17.0 16 32.0 17 87.0 18 207.0 19 451.0 20 905.0 21 1919.0 22 3461.0 23 6101.0 24 10184.0 25 15618.0 26 23127.0 27 32846.0 28 44976.0 29 59084.0 30 74946.0 31 92994.0 32 115788.0 33 145419.0 34 182735.0 35 229729.0 36 302590.0 37 436372.0 38 613437.0 39 755481.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.88622770656789 20.9669504722382 13.699370211436051 23.447451609757863 2 18.812698168693387 22.8602227651939 35.325488158393306 23.001590907719415 3 19.91064364588154 24.753018643380358 31.781406929039925 23.55493078169818 4 14.041118405903477 16.234087349695113 35.99637543643563 33.72841880796578 5 13.38271319481521 37.8957775994222 34.66400213179729 14.057507073965297 6 32.68561040007089 36.64966712900073 14.149486885413037 16.515235585515338 7 26.326299016330545 32.32868045495705 22.05546293699542 19.28955759171699 8 26.56714256267316 34.6088015405348 19.428893031227084 19.395162865564963 9 24.59821560436231 14.698284938591724 21.952271497978256 38.75122795906771 10 16.782790119919948 27.072682154804944 33.67823645227261 22.466291273002494 11 33.06248624352354 22.564655042358037 23.455900031665703 20.916958682452723 12 20.918356165775823 26.83069521301616 31.071421878935386 21.179526742272632 13 30.895815394993896 20.761075769957728 26.3132452516534 22.029863583394977 14 20.650642826448134 22.636688955466973 27.674235203430698 29.038433014654203 15 23.22674452766175 29.08401002757806 25.2891758246819 22.400069620078277 16 22.19346441515164 27.91599981832717 26.598046000704457 23.292489765816732 17 21.947952004070487 26.638191885258994 27.28363861462396 24.13021749604655 18 22.79597029331587 25.66897367871922 29.24570520025777 22.28935082770714 19 22.941657929749148 25.05023793741625 30.151496720519532 21.856607412315068 20 23.65180178477677 24.765468949349806 29.884545644822623 21.6981836210508 21 22.573961010850503 25.637466781980216 30.204251715966596 21.584320491202682 22 21.735153407143745 26.02393444278687 29.70010960715791 22.54080254291147 23 22.29589359053802 26.1264589011271 30.51134867621804 21.066298832116832 24 22.4310048190942 26.247245925621492 28.55455441403048 22.767194841253836 25 22.514440925680248 26.139258577927322 29.333397278782357 22.01290321761007 26 22.153858467335574 26.78330782396919 29.542511601493654 21.52032210720158 27 21.47893754424702 26.80677919160036 29.18208794807206 22.532195316080557 28 21.689481111266034 26.538970569318828 29.520310673247117 22.251237646168022 29 22.053684321856927 26.552246660888283 28.96817771668376 22.42589130057103 30 21.848095468437997 26.626249755043407 30.200186309935756 21.32546846658284 31 22.28217284518394 26.25756824562167 30.06682193553346 21.393436973660933 32 21.847682575637993 26.129952609434852 29.32660042807455 22.695764386852606 33 21.61477927544936 26.196460111220617 29.84287523300652 22.345885380323498 34 21.2897055979053 26.43917755565557 30.224324658243866 22.04679218819527 35 21.056675253778206 27.82309893832557 29.31122811152044 21.808997696375787 36 22.558239323465617 26.066907054972226 29.389550699583328 21.985302921978825 37 21.58339942264882 26.313531100514943 29.479497808015648 22.623571668820592 38 21.48868816652411 25.36136854271392 30.63051589049702 22.51942740026495 39 20.963234437038135 25.24363057274266 31.207549458999267 22.585585531219937 40 20.185185596901654 26.00779986260198 30.93405562047148 22.87295892002489 41 21.15243462239524 24.911696522521556 31.0124417305036 22.923427124579604 42 19.928779168097236 26.729345911106723 30.517827917079693 22.824047003716352 43 20.286185527980315 26.384072247346925 29.938380513746633 23.391361710926127 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 198.0 1 414.0 2 630.0 3 1929.5 4 3229.0 5 3229.0 6 4729.5 7 6230.0 8 6717.5 9 7205.0 10 10344.5 11 13484.0 12 13484.0 13 23928.5 14 34373.0 15 51601.5 16 68830.0 17 63926.5 18 59023.0 19 59023.0 20 62681.5 21 66340.0 22 53513.5 23 40687.0 24 45257.5 25 49828.0 26 49828.0 27 55622.5 28 61417.0 29 68158.5 30 74900.0 31 83112.0 32 91324.0 33 91324.0 34 102459.5 35 113595.0 36 126268.0 37 138941.0 38 149510.5 39 160080.0 40 160080.0 41 168029.5 42 175979.0 43 187710.0 44 199441.0 45 209605.5 46 219770.0 47 219770.0 48 265401.5 49 311033.0 50 295873.5 51 280714.0 52 260802.5 53 240891.0 54 240891.0 55 217851.0 56 194811.0 57 167300.0 58 139789.0 59 125551.0 60 111313.0 61 111313.0 62 98730.5 63 86148.0 64 74584.5 65 63021.0 66 53896.0 67 44771.0 68 44771.0 69 38746.0 70 32721.0 71 27926.5 72 23132.0 73 19024.5 74 14917.0 75 14917.0 76 11878.0 77 8839.0 78 6972.0 79 5105.0 80 3908.0 81 2711.0 82 2711.0 83 2083.0 84 1455.0 85 1115.0 86 775.0 87 604.0 88 433.0 89 433.0 90 356.5 91 280.0 92 187.0 93 94.0 94 66.0 95 38.0 96 38.0 97 27.5 98 17.0 99 11.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3148517.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.35715259531764 #Duplication Level Percentage of deduplicated Percentage of total 1 78.26497396947451 36.28141341171494 2 11.772228114393245 10.914539501716323 3 3.877412197168848 5.392373666973064 4 1.8232773984899702 3.380877943415733 5 0.9698506366662552 2.2479756979301784 6 0.5922341627221892 1.6472573672083621 7 0.3961923882295596 1.285644569878272 8 0.30019093315533235 1.1132797516810031 9 0.23939672816920785 0.9987975592703773 >10 1.4982146580729776 13.27576391933196 >50 0.1537493636467953 4.944539522417071 >100 0.09970159801794685 8.846293045269356 >500 0.008110308806500637 2.549305213048632 >1k 0.003848960111489495 3.1246042959659936 >5k 3.4365715281156205E-4 0.9101680108350879 >10k+ 2.7492572224924964E-4 3.0871665233436025 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 32627 1.0362656450640095 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28203 0.8957550491231269 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 23190 0.7365372332434603 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12872 0.4088273939762752 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6094 0.1935514402494889 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5928 0.1882791168032442 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5633 0.17890962634154428 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5632 0.17887786535692834 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5279 0.1676662377875044 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4644 0.14749801255638767 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3449 0.10954363594034906 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3388 0.10760621587877722 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3340 0.10608168861721248 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3198 0.10157162880175016 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 6.352196923186376E-5 0.0 5 0.0 0.0 0.0 6.352196923186376E-5 0.0 6 0.0 0.0 0.0 6.352196923186376E-5 0.0 7 0.0 0.0 0.0 6.352196923186376E-5 0.0 8 0.0 0.0 0.0 9.528295384779564E-5 0.0 9 3.176098461593188E-5 0.0 0.0 4.1289280000711447E-4 0.0 10 3.176098461593188E-5 0.0 0.0 5.39936738470842E-4 0.0 11 3.176098461593188E-5 0.0 0.0 7.94024615398297E-4 0.0 12 3.176098461593188E-5 0.0 0.0 0.0012386784000213433 0.0 13 6.352196923186376E-5 0.0 0.0 0.001302200369253207 0.0 14 1.2704393846372752E-4 0.0 0.0 0.0015245272615647303 3.176098461593188E-5 15 1.2704393846372752E-4 0.0 0.0 0.0019374200615718449 3.176098461593188E-5 16 1.2704393846372752E-4 0.0 0.0 0.002636161723122346 3.176098461593188E-5 17 1.2704393846372752E-4 0.0 0.0 0.0035254692923684387 3.176098461593188E-5 18 1.2704393846372752E-4 0.0 0.0 0.004001884061607417 3.176098461593188E-5 19 1.5880492307965941E-4 0.0 0.0 0.0049229526154694414 3.176098461593188E-5 20 1.5880492307965941E-4 0.0 0.0 0.008162573046294494 3.176098461593188E-5 21 1.5880492307965941E-4 0.0 0.0 0.014578291938712734 3.176098461593188E-5 22 1.5880492307965941E-4 0.0 0.0 0.024519480123499412 6.352196923186376E-5 23 1.5880492307965941E-4 0.0 0.0 0.032142116431323066 6.352196923186376E-5 24 1.5880492307965941E-4 0.0 0.0 0.0445289004315365 6.352196923186376E-5 25 1.5880492307965941E-4 0.0 0.0 0.054279522708627584 6.352196923186376E-5 26 1.5880492307965941E-4 0.0 0.0 0.06609460898575424 6.352196923186376E-5 27 1.5880492307965941E-4 0.0 0.0 0.12199394190979436 1.2704393846372752E-4 28 1.5880492307965941E-4 0.0 0.0 0.25062592960431845 1.2704393846372752E-4 29 2.2232689231152316E-4 0.0 0.0 0.4206107192687859 1.2704393846372752E-4 30 2.2232689231152316E-4 0.0 0.0 0.6599614993344486 1.2704393846372752E-4 31 2.2232689231152316E-4 0.0 0.0 1.0429036908487392 1.2704393846372752E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11465 0.0 18.895334 1 TAATACT 895 0.0 17.156425 4 GTATTGG 1470 0.0 16.989796 1 CTCTAAT 730 0.0 16.979452 1 CTAATAC 875 0.0 16.279999 3 AATACTG 890 0.0 16.213482 5 TGCGACG 155 7.223207E-9 15.5161295 22 TCTAATA 825 0.0 14.8 2 TACTGGT 865 0.0 14.757225 7 ATACTGG 885 0.0 14.63277 6 ATTGGAC 1710 0.0 14.605263 3 GCTAGAG 735 0.0 14.598639 17 GACCGTG 330 0.0 14.575759 7 TCTAGTA 305 0.0 14.557377 2 AAGACCG 210 1.364242E-10 14.095239 5 TCTACGC 105 1.6570745E-4 14.095239 3 TGCTAGA 775 0.0 14.083872 16 GGTAAAC 750 0.0 14.059999 35 TATACCG 175 3.5723133E-8 13.742857 5 TTAACGG 475 0.0 13.63158 35 >>END_MODULE