##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088629_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4436396 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.76617844755067 31.0 31.0 34.0 30.0 34.0 2 31.943621353909794 31.0 31.0 34.0 30.0 34.0 3 32.032198433142575 33.0 31.0 34.0 30.0 34.0 4 35.70063650765171 37.0 35.0 37.0 35.0 37.0 5 35.61161244397479 37.0 35.0 37.0 33.0 37.0 6 35.64671954442299 37.0 35.0 37.0 33.0 37.0 7 35.52247206967097 37.0 35.0 37.0 33.0 37.0 8 35.54132656327343 37.0 35.0 37.0 33.0 37.0 9 37.17262818738453 39.0 37.0 39.0 33.0 39.0 10 37.03241798072129 39.0 37.0 39.0 33.0 39.0 11 37.07977150822424 39.0 37.0 39.0 33.0 39.0 12 36.98700611938159 39.0 37.0 39.0 33.0 39.0 13 37.02892077262715 39.0 37.0 39.0 33.0 39.0 14 38.10108340193256 40.0 37.0 41.0 33.0 41.0 15 38.065052804122985 40.0 37.0 41.0 33.0 41.0 16 37.97345638216246 40.0 37.0 41.0 33.0 41.0 17 37.9779548534441 40.0 37.0 41.0 33.0 41.0 18 37.951678569721906 40.0 37.0 41.0 33.0 41.0 19 37.96814734302348 40.0 37.0 41.0 33.0 41.0 20 37.84996267240346 40.0 37.0 41.0 32.0 41.0 21 37.75128640455 40.0 37.0 41.0 32.0 41.0 22 37.59756432924383 39.0 37.0 41.0 32.0 41.0 23 37.46841580417979 39.0 36.0 41.0 32.0 41.0 24 37.335608002531785 39.0 36.0 41.0 31.0 41.0 25 37.14249967766629 39.0 36.0 41.0 31.0 41.0 26 37.30243107242906 39.0 36.0 41.0 31.0 41.0 27 37.239647903388246 39.0 36.0 41.0 31.0 41.0 28 37.13228733413338 39.0 36.0 41.0 31.0 41.0 29 36.99097984039297 39.0 36.0 41.0 31.0 41.0 30 36.86863683945256 39.0 35.0 41.0 30.0 41.0 31 36.70212983692168 39.0 35.0 41.0 30.0 41.0 32 36.58042068381632 39.0 35.0 40.0 30.0 41.0 33 36.38768991767191 39.0 35.0 40.0 30.0 41.0 34 36.250784420507095 39.0 35.0 40.0 30.0 41.0 35 36.064984505440904 38.0 35.0 40.0 29.0 41.0 36 35.92479616337225 38.0 35.0 40.0 28.0 41.0 37 35.77013819325416 38.0 35.0 40.0 27.0 41.0 38 35.69278035594658 38.0 35.0 40.0 27.0 41.0 39 35.565151532910946 38.0 35.0 40.0 26.0 41.0 40 35.39746091196548 38.0 34.0 40.0 25.0 41.0 41 35.27748672571159 38.0 34.0 40.0 25.0 41.0 42 35.072901517357785 38.0 34.0 40.0 24.0 41.0 43 34.73248488187258 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 1.0 13 5.0 14 9.0 15 30.0 16 61.0 17 142.0 18 308.0 19 678.0 20 1432.0 21 2795.0 22 5381.0 23 9131.0 24 14638.0 25 22697.0 26 33601.0 27 47316.0 28 64882.0 29 85575.0 30 107679.0 31 134263.0 32 166189.0 33 207221.0 34 259304.0 35 325547.0 36 427049.0 37 613237.0 38 868258.0 39 1038964.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.28553988417625 20.657375942093537 13.237794822644327 23.81928935108588 2 18.87338280892869 22.566583325744592 35.11273565299401 23.44729821233271 3 19.93419884068059 24.659746334637394 31.547026009400426 23.859028815281594 4 13.950242494132626 15.933406305478591 36.07489051924129 34.04146068114749 5 13.475600464881854 37.71396872596585 34.836092179327544 13.97433862982475 6 33.08665412194944 36.51610451366379 14.117923647934044 16.279317716452724 7 26.94768456197328 31.9120069533919 21.987149028175125 19.153159456459704 8 26.880174808560824 34.3928495111798 19.263541847932423 19.46343383232696 9 24.768393083034066 14.44862000596881 21.62000416554338 39.162982745453746 10 16.610216941860013 26.857949560859762 33.85265877978431 22.679174717495915 11 33.60716671821001 22.06536567069306 23.43855237449497 20.888915236601964 12 21.031395754571953 26.357160181372446 31.092783421497987 21.518660642557606 13 31.026130219213975 20.501303310164374 26.22297468485681 22.249591785764842 14 20.831436147719906 22.089213857374318 27.547969117274473 29.531380877631303 15 23.561737951255928 28.723292510407095 24.977436640011398 22.737532898325576 16 22.551819089188612 27.59622901111623 26.333018964041983 23.518932935653176 17 22.191323768211856 26.297066357466736 27.10091705068709 24.41069282363432 18 23.10057533186848 25.412113796874756 28.984585686219173 22.502725185037583 19 23.166777717769108 24.77456926748649 29.769434468879695 22.289218545864706 20 23.880059399566676 24.511901101705078 29.537286572253695 22.07075292647455 21 22.921533605205667 25.344649125100645 29.84127205957268 21.89254521012101 22 22.082699560634353 25.725814377255773 29.417369414272304 22.77411664783757 23 22.63075703791997 25.764697290323046 30.22710326129588 21.377442410461104 24 22.837073155777798 25.851592148221215 28.22115068176962 23.090184014231372 25 22.867052445273146 25.755320309548562 29.00031917799944 22.377308067178856 26 22.64869952997884 26.35794911004338 29.150238166295345 21.84311319368244 27 21.91706962137735 26.42978670073636 28.78092938502334 22.872214292862946 28 22.13533237339498 26.198698222611327 29.088566485047775 22.577402918945918 29 22.510005869629314 26.185196271928834 28.611760537156737 22.693037321285114 30 22.262552756787265 26.28962788714082 29.798985482810824 21.64883387326109 31 22.75524998219275 25.881684141812407 29.75602268147388 21.60704319452096 32 22.297986924521616 25.77330788324577 28.935491782068144 22.99321341016447 33 22.103482195908573 25.891106204225235 29.40657236189015 22.59883923797605 34 21.797535657321845 26.22782096097824 29.65675291385169 22.317890467848226 35 21.555920616644684 27.703500769543567 28.84778545467988 21.89279315913187 36 23.03518441545795 25.94966725242742 28.867125477527257 22.148022854587374 37 22.078619672364685 26.154473135400895 28.921268525172234 22.845638667062182 38 21.979552772115024 25.245401898297626 29.96179781967164 22.81324750991571 39 21.545754707199265 25.16285741849916 30.445501258228525 22.845886616073045 40 20.8663969582517 25.85903061854713 30.206523493394187 23.068048929806988 41 21.843654173342504 24.71720288270028 30.31176657809627 23.12737636586094 42 20.52352855786544 26.464364317342277 29.861671500921016 23.150435623871267 43 20.990709575971124 26.10317023097127 29.340753169915402 23.56536702314221 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 216.0 1 490.0 2 764.0 3 2460.5 4 4157.0 5 4157.0 6 6274.0 7 8391.0 8 8892.0 9 9393.0 10 13369.5 11 17346.0 12 17346.0 13 30448.0 14 43550.0 15 65976.0 16 88402.0 17 82211.0 18 76020.0 19 76020.0 20 82191.0 21 88362.0 22 71686.0 23 55010.0 24 61908.0 25 68806.0 26 68806.0 27 76856.0 28 84906.0 29 94016.5 30 103127.0 31 114044.0 32 124961.0 33 124961.0 34 140566.0 35 156171.0 36 172806.0 37 189441.0 38 204448.5 39 219456.0 40 219456.0 41 228297.5 42 237139.0 43 255773.5 44 274408.0 45 286589.5 46 298771.0 47 298771.0 48 364120.0 49 429469.0 50 414529.5 51 399590.0 52 376253.0 53 352916.0 54 352916.0 55 319387.0 56 285858.0 57 246936.0 58 208014.0 59 187849.5 60 167685.0 61 167685.0 62 149490.0 63 131295.0 64 114771.0 65 98247.0 66 84374.0 67 70501.0 68 70501.0 69 61199.5 70 51898.0 71 44099.0 72 36300.0 73 29775.5 74 23251.0 75 23251.0 76 18866.5 77 14482.0 78 11295.0 79 8108.0 80 6384.0 81 4660.0 82 4660.0 83 3571.0 84 2482.0 85 1918.5 86 1355.0 87 1040.0 88 725.0 89 725.0 90 607.5 91 490.0 92 324.0 93 158.0 94 118.5 95 79.0 96 79.0 97 52.5 98 26.0 99 18.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4436396.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.43279342132551 #Duplication Level Percentage of deduplicated Percentage of total 1 76.08243758653771 33.04472794686985 2 12.443728319601629 10.809317629927111 3 4.5064208169822715 5.871793332406558 4 2.1373029879794956 3.713161566227808 5 1.1669759890367963 2.53425135297411 6 0.6978836878332519 1.8186622827464676 7 0.49541600138000047 1.5062110591889672 8 0.338097235890552 1.1747605922204407 9 0.25394787376739714 0.9926698987011789 >10 1.5858778594931517 13.153868029984913 >50 0.1634572647131349 4.956072694284828 >100 0.113164347660901 9.503700966188584 >500 0.009673283810973056 2.909318287679773 >1k 0.005044669401169457 3.979811099020426 >5k 3.640483073008881E-4 1.191316339503357 >10k+ 2.0802760417193606E-4 2.840356922075599 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 42227 0.9518311710676864 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 37318 0.8411782897649354 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 29735 0.6702512580031178 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16466 0.37115712844389903 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9516 0.21449843521633327 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9209 0.20757840373131706 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8199 0.1848121763701888 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7386 0.16648649038543897 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 6731 0.15172225382945975 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5988 0.13497442518657035 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5712 0.1287531590958066 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4671 0.10528816634042587 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4458 0.10048697185733645 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.2540819169433926E-5 0.0 0.0 0.0 0.0 3 2.2540819169433926E-5 0.0 0.0 0.0 0.0 4 2.2540819169433926E-5 0.0 0.0 0.0 0.0 5 2.2540819169433926E-5 0.0 0.0 0.0 0.0 6 2.2540819169433926E-5 0.0 0.0 0.0 0.0 7 2.2540819169433926E-5 0.0 2.2540819169433926E-5 2.2540819169433926E-5 0.0 8 6.762245750830179E-5 0.0 2.2540819169433926E-5 4.508163833886785E-5 0.0 9 1.3524491501660358E-4 0.0 2.2540819169433926E-5 2.479490108637732E-4 0.0 10 2.0286737252490534E-4 0.0 2.2540819169433926E-5 3.3811228754150895E-4 2.2540819169433926E-5 11 2.0286737252490534E-4 0.0 2.2540819169433926E-5 4.7335720255811247E-4 2.2540819169433926E-5 12 2.0286737252490534E-4 0.0 2.2540819169433926E-5 6.086021175747161E-4 2.2540819169433926E-5 13 2.0286737252490534E-4 0.0 2.2540819169433926E-5 6.53683755913584E-4 2.2540819169433926E-5 14 2.7048983003320716E-4 0.0 2.2540819169433926E-5 8.790919476079231E-4 2.2540819169433926E-5 15 2.7048983003320716E-4 0.0 2.2540819169433926E-5 0.0011270409584716965 2.2540819169433926E-5 16 2.7048983003320716E-4 0.0 2.2540819169433926E-5 0.0017807247143852803 2.2540819169433926E-5 17 2.7048983003320716E-4 0.0 2.2540819169433926E-5 0.0023893268319599963 2.2540819169433926E-5 18 2.930306492026411E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.0028626840345181087 2.2540819169433926E-5 19 2.930306492026411E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.003809398439634334 2.2540819169433926E-5 20 2.930306492026411E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.0061761844524248965 2.2540819169433926E-5 21 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.010571644190464512 2.2540819169433926E-5 22 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.017762165505513936 2.2540819169433926E-5 23 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.023600237670397324 2.2540819169433926E-5 24 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.03367598383913429 2.2540819169433926E-5 25 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.04133986235674182 2.2540819169433926E-5 26 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.0518213432705286 2.2540819169433926E-5 27 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.09830051239790136 2.2540819169433926E-5 28 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.2039718726642076 2.2540819169433926E-5 29 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.33396477681433306 2.2540819169433926E-5 30 3.3811228754150895E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.5082503906323962 2.2540819169433926E-5 31 3.606531067109428E-4 2.2540819169433926E-5 2.2540819169433926E-5 0.7842627213621146 2.2540819169433926E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 15365 0.0 18.819069 1 ACCGTTA 585 0.0 16.444445 8 GTATTGG 2485 0.0 15.782696 1 CTAATAC 1040 0.0 15.298076 3 GTATTAG 1180 0.0 14.894068 1 TGTTACG 355 0.0 14.59155 16 GACCGTT 665 0.0 14.466166 7 CCGTTTA 645 0.0 14.341085 27 ATTGGAC 2905 0.0 14.328743 3 TTGGACC 3340 0.0 14.068862 4 ATTAGAC 320 0.0 13.875001 3 ATTAGAG 975 0.0 13.851282 3 TTAACGG 710 0.0 13.809859 35 TAATACT 1225 0.0 13.742857 4 TGGACCC 3175 0.0 13.576378 5 GCGCTAG 150 1.3077952E-6 13.566667 11 CGTTATT 355 0.0 13.549296 10 TAACGGC 725 0.0 13.524138 36 CTCTAAT 1000 0.0 13.505 1 CGTTTAC 675 0.0 13.429629 28 >>END_MODULE