##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088628_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3462914 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.733339898132037 31.0 31.0 34.0 30.0 34.0 2 31.900294665128847 31.0 31.0 34.0 30.0 34.0 3 31.96709072186026 33.0 31.0 34.0 30.0 34.0 4 35.63524823313545 37.0 35.0 37.0 33.0 37.0 5 35.57287995023844 37.0 35.0 37.0 33.0 37.0 6 35.62909590015808 37.0 35.0 37.0 33.0 37.0 7 35.47928276590178 37.0 35.0 37.0 33.0 37.0 8 35.52824355441689 37.0 35.0 37.0 33.0 37.0 9 37.124739453535376 39.0 37.0 39.0 33.0 39.0 10 37.00994191597019 39.0 37.0 39.0 33.0 39.0 11 37.0589154105473 39.0 37.0 39.0 33.0 39.0 12 36.96038509763742 39.0 37.0 39.0 33.0 39.0 13 37.00640703176573 39.0 37.0 39.0 33.0 39.0 14 37.998518877454075 40.0 37.0 41.0 33.0 41.0 15 37.96918375680135 40.0 37.0 41.0 33.0 41.0 16 37.86772787311495 40.0 37.0 41.0 32.0 41.0 17 37.946082403432484 40.0 37.0 41.0 33.0 41.0 18 37.942273183798385 40.0 37.0 41.0 33.0 41.0 19 37.981716265549764 40.0 37.0 41.0 33.0 41.0 20 37.878340611404155 40.0 37.0 41.0 32.0 41.0 21 37.78283751776683 40.0 37.0 41.0 32.0 41.0 22 37.63121088193354 39.0 37.0 41.0 32.0 41.0 23 37.49323719849814 39.0 36.0 41.0 32.0 41.0 24 37.346021587599346 39.0 36.0 41.0 31.0 41.0 25 37.135026165824506 39.0 36.0 41.0 31.0 41.0 26 37.26094959331938 39.0 36.0 41.0 31.0 41.0 27 37.179552538700065 39.0 36.0 41.0 31.0 41.0 28 37.046784297848575 39.0 35.0 41.0 31.0 41.0 29 36.8812046732896 39.0 35.0 41.0 31.0 41.0 30 36.713215517335975 39.0 35.0 41.0 30.0 41.0 31 36.470076068883024 39.0 35.0 40.0 30.0 41.0 32 36.33112632886638 38.0 35.0 40.0 30.0 41.0 33 36.10307041988337 38.0 35.0 40.0 30.0 41.0 34 35.94016339995738 38.0 35.0 40.0 29.0 41.0 35 35.71754250899676 38.0 35.0 40.0 28.0 41.0 36 35.54598641490952 38.0 35.0 40.0 27.0 41.0 37 35.34641691939216 38.0 34.0 40.0 26.0 41.0 38 35.203210071055764 38.0 34.0 40.0 25.0 41.0 39 35.026613713190685 38.0 34.0 40.0 24.0 41.0 40 34.78902652505953 38.0 34.0 40.0 23.0 41.0 41 34.60295433268051 38.0 33.0 40.0 22.0 41.0 42 34.315419614809954 38.0 33.0 40.0 21.0 41.0 43 33.92445812977163 38.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 2.0 11 4.0 12 10.0 13 12.0 14 13.0 15 35.0 16 58.0 17 120.0 18 230.0 19 558.0 20 1175.0 21 2427.0 22 4312.0 23 7660.0 24 12706.0 25 19516.0 26 28784.0 27 40641.0 28 55323.0 29 72762.0 30 91134.0 31 111029.0 32 137258.0 33 170491.0 34 211456.0 35 261703.0 36 342759.0 37 502276.0 38 642754.0 39 745705.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.37434137838826 20.997431642830286 14.366628798751572 22.261598180029882 2 19.06804500487162 23.61164614541395 34.94178602183017 22.37852282788426 3 20.30786788236728 24.63029691179163 33.006161862523875 22.055673343317217 4 13.719543713762455 16.017492782090457 35.85535187994851 34.40761162419858 5 12.80701744253539 38.520390630549876 34.46805205096055 14.20453987595418 6 32.19002839804858 36.483002465553575 13.185340438717219 18.141628697680623 7 25.47441259009031 33.35439459368612 21.335701666284525 19.83549114993904 8 27.390082456566926 33.946497083092446 18.74404042375872 19.919380036581906 9 24.12771440468923 14.48300477574667 22.49868174606704 38.890599073497064 10 17.19072434371746 27.119241193977096 32.687788377072025 23.00224608523342 11 32.419834855846844 22.40670718360317 23.771136100983163 21.40232185956683 12 21.146612361727723 27.47862060680687 30.853148533287282 20.521618498178125 13 32.09759179696637 20.580008628571196 26.77554221675733 20.5468573577051 14 20.290368169697544 23.4253868273945 28.346531273950205 27.937713728957753 15 22.73293532556685 29.17574620680733 26.357397267157083 21.73392120046874 16 21.250253399304746 28.15380341527396 27.432301235318 23.163641950103294 17 21.39172384875859 26.43294058125613 27.45185124435663 24.723484325628647 18 22.904755936763085 24.75472968719408 30.37603590502103 21.964478471021803 19 22.583581342187532 24.31862298630575 31.725852851095926 21.371942820410787 20 23.746128260765357 23.74843845385707 31.54167270685902 20.963760578518553 21 22.31955514921826 24.858197460289226 32.19404235854543 20.628205031947083 22 20.753099845967878 25.31821465967679 31.741533286705938 22.187152207649397 23 21.80550830889823 25.58836286433911 32.84955964831931 19.756569178443357 24 21.85584164088395 25.616229568507908 30.064361979535153 22.463566811072987 25 21.706170005954522 25.89763996449233 31.169818251333993 21.226371778219153 26 21.45360814620288 26.703204295573034 31.198955561703233 20.644231996520848 27 20.28609431247787 26.768380618173023 30.91064346385732 22.03488160549179 28 20.724078045253215 26.376658502059247 30.981653024013877 21.917610428673655 29 21.02327692804384 26.238364568106515 30.328734701468186 22.40962380238146 30 20.96644617798767 26.453992215804377 32.31241087708213 20.26715072912582 31 21.68390552003313 26.102496336900078 32.02756406887379 20.186034074193007 32 21.4053539879997 25.906418698240845 30.722564868778147 21.96566244498131 33 20.858155876813576 26.049910566649935 31.38784272436451 21.70409083217198 34 20.089265861063833 26.667136405928648 31.956843282853686 21.28675445015383 35 19.651051108979317 28.939211311629453 30.703014859739515 20.706722719651715 36 22.02058728573681 26.18346860476466 30.6513820441397 21.144562065358826 37 20.979527646369505 26.895816644594696 30.562324100454124 21.562331608581676 38 20.686970568717562 25.326386967738728 32.169871963323374 21.816770500220333 39 20.17685105665344 25.100969876814727 32.90751661750768 21.814662449024144 40 18.980806338245767 26.018549695429915 32.4007757628402 22.599868203484117 41 20.56762021811688 24.84046672831032 32.35116436619564 22.240748687377163 42 19.09856843109589 27.04589256331517 31.65998347056843 22.195555535020507 43 19.383819523095287 27.00973804142985 30.733798182686606 22.87264425278826 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 228.0 1 483.5 2 739.0 3 2295.0 4 3851.0 5 3851.0 6 6071.5 7 8292.0 8 9079.0 9 9866.0 10 14571.5 11 19277.0 12 19277.0 13 35937.5 14 52598.0 15 81646.5 16 110695.0 17 100313.5 18 89932.0 19 89932.0 20 95285.0 21 100638.0 22 76030.0 23 51422.0 24 56193.0 25 60964.0 26 60964.0 27 64050.0 28 67136.0 29 71252.0 30 75368.0 31 81867.5 32 88367.0 33 88367.0 34 97043.0 35 105719.0 36 118348.0 37 130977.0 38 139351.5 39 147726.0 40 147726.0 41 155120.0 42 162514.0 43 177007.0 44 191500.0 45 210380.0 46 229260.0 47 229260.0 48 310853.0 49 392446.0 50 368589.5 51 344733.0 52 314812.5 53 284892.0 54 284892.0 55 248650.0 56 212408.0 57 178902.5 58 145397.0 59 127197.0 60 108997.0 61 108997.0 62 95249.0 63 81501.0 64 70939.0 65 60377.0 66 51863.5 67 43350.0 68 43350.0 69 36948.0 70 30546.0 71 25501.5 72 20457.0 73 16940.0 74 13423.0 75 13423.0 76 10552.5 77 7682.0 78 6132.5 79 4583.0 80 3495.5 81 2408.0 82 2408.0 83 1852.5 84 1297.0 85 958.0 86 619.0 87 499.5 88 380.0 89 380.0 90 305.5 91 231.0 92 147.5 93 64.0 94 49.5 95 35.0 96 35.0 97 24.0 98 13.0 99 9.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3462914.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.14783161923312 #Duplication Level Percentage of deduplicated Percentage of total 1 77.02222310138849 30.922752440135525 2 12.145273900835372 9.752128230804104 3 4.2301354787429215 5.094923007813447 4 1.9465195216297873 3.1259415199177165 5 1.049015953679273 2.105785793710235 6 0.6644201679832443 1.6005017417168328 7 0.43496731674402833 1.2224096214756222 8 0.3307307313429752 1.0622497370610877 9 0.23785695509212965 0.8594496884252083 >10 1.5935451177800974 12.505421268288583 >50 0.18776657279527467 5.2766187352786975 >100 0.1389527731338273 11.033804288640793 >500 0.010953667231072094 2.952594627174977 >1k 0.006413660418117219 4.933508945506814 >5k 7.206360020356426E-4 1.9171771821301131 >10k+ 5.044452014249498E-4 5.634733171920268 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 54707 1.5797966683550329 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 48680 1.4057524963080226 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 38626 1.1154189795068545 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20534 0.5929688118157136 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 11340 0.327469870750472 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 10453 0.30185560484609203 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 10418 0.30084489536846715 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9930 0.2867527175090112 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 9532 0.27525950687773365 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 8336 0.240722120156608 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5895 0.17023235344568188 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5799 0.16746012173562497 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 5491 0.15856587833252572 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 5480 0.15824822678241504 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 5324 0.15374335025357255 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5312 0.15339682128981547 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5166 0.14918071889743725 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4720 0.1363013924111312 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 4583 0.13234518674157084 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4477 0.12928418089504964 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3981 0.11496098372642233 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3931 0.11351711304410102 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 3550 0.10251481844481267 No Hit TTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGT 3503 0.10115758000343064 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.8877413646426104E-5 2 0.0 0.0 0.0 0.0 2.8877413646426104E-5 3 0.0 0.0 0.0 2.8877413646426104E-5 2.8877413646426104E-5 4 0.0 0.0 0.0 2.8877413646426104E-5 2.8877413646426104E-5 5 0.0 0.0 0.0 5.775482729285221E-5 2.8877413646426104E-5 6 0.0 0.0 0.0 5.775482729285221E-5 1.732644818785566E-4 7 0.0 0.0 0.0 5.775482729285221E-5 1.732644818785566E-4 8 0.0 0.0 0.0 5.775482729285221E-5 2.3101930917140883E-4 9 2.8877413646426104E-5 0.0 0.0 1.443870682321305E-4 2.3101930917140883E-4 10 5.775482729285221E-5 0.0 0.0 4.6203861834281766E-4 2.3101930917140883E-4 11 5.775482729285221E-5 0.0 0.0 9.529546503320614E-4 2.598967228178349E-4 12 5.775482729285221E-5 0.0 0.0 0.0013861158550284528 2.598967228178349E-4 13 8.66322409392783E-5 0.0 0.0 0.001674889991492714 2.598967228178349E-4 14 1.732644818785566E-4 0.0 0.0 0.0019059093006641228 3.176515501106871E-4 15 1.732644818785566E-4 0.0 0.0 0.0023968253326533667 3.176515501106871E-4 16 2.0214189552498273E-4 0.0 0.0 0.0032631477420461494 3.176515501106871E-4 17 2.0214189552498273E-4 0.0 0.0 0.0045626313561353245 3.176515501106871E-4 18 2.0214189552498273E-4 0.0 0.0 0.005746605315638795 3.176515501106871E-4 19 2.0214189552498273E-4 0.0 0.0 0.007219353411606525 3.176515501106871E-4 20 2.0214189552498273E-4 0.0 0.0 0.01230177821337752 3.176515501106871E-4 21 2.0214189552498273E-4 0.0 0.0 0.020705105584487515 3.176515501106871E-4 22 2.0214189552498273E-4 0.0 0.0 0.03401759327548995 3.176515501106871E-4 23 2.0214189552498273E-4 0.0 0.0 0.0432583656423463 3.176515501106871E-4 24 2.3101930917140883E-4 0.0 0.0 0.05579116316489523 3.176515501106871E-4 25 2.3101930917140883E-4 0.0 0.0 0.06451214208611591 3.176515501106871E-4 26 2.598967228178349E-4 0.0 0.0 0.07857544253192543 3.176515501106871E-4 27 2.598967228178349E-4 0.0 0.0 0.14597532598268395 3.176515501106871E-4 28 2.598967228178349E-4 0.0 0.0 0.29749511538548173 3.176515501106871E-4 29 2.598967228178349E-4 0.0 0.0 0.5001568043561001 3.176515501106871E-4 30 2.598967228178349E-4 0.0 0.0 0.7826645420590866 3.176515501106871E-4 31 2.598967228178349E-4 0.0 0.0 1.1550965458570441 3.465289637571132E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 16915 0.0 21.513153 1 GTATTGG 1945 0.0 18.452442 1 ATTGGAC 2105 0.0 17.313538 3 TTGGACC 2745 0.0 15.905282 4 TGTTACG 400 0.0 15.725 16 TAATACT 720 0.0 15.673612 4 TATTGGA 2260 0.0 15.553098 2 ACGTTTA 120 1.9381423E-6 15.416667 26 TCTATAC 360 0.0 15.416667 3 ACCGTTA 665 0.0 15.300752 8 GACCGTT 715 0.0 14.748252 7 GGACCCT 2890 0.0 14.659169 6 TGGACCC 2920 0.0 14.635274 5 GTATCAA 25470 0.0 14.272674 2 TATACAC 1945 0.0 14.172236 37 CGTTATT 475 0.0 14.021052 10 CCGTTTA 720 0.0 13.875001 27 AATACTG 735 0.0 13.843537 5 ATACACA 1315 0.0 13.787072 37 GTATTAG 685 0.0 13.773723 1 >>END_MODULE