##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088623_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3575955 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.709583034462124 31.0 31.0 34.0 30.0 34.0 2 31.888404076673226 31.0 31.0 34.0 30.0 34.0 3 31.968886633081233 31.0 31.0 34.0 30.0 34.0 4 35.654853598549195 37.0 35.0 37.0 33.0 37.0 5 35.55868096774149 37.0 35.0 37.0 33.0 37.0 6 35.5859984255954 37.0 35.0 37.0 33.0 37.0 7 35.45524873774978 37.0 35.0 37.0 33.0 37.0 8 35.47657842450478 37.0 35.0 37.0 33.0 37.0 9 37.08820776547803 39.0 37.0 39.0 33.0 39.0 10 36.94470875612249 39.0 37.0 39.0 33.0 39.0 11 36.989495673183804 39.0 37.0 39.0 33.0 39.0 12 36.89564857499605 39.0 37.0 39.0 33.0 39.0 13 36.93943967415697 39.0 37.0 39.0 33.0 39.0 14 37.98433733086686 40.0 37.0 41.0 33.0 41.0 15 37.94194278171845 40.0 37.0 41.0 33.0 41.0 16 37.84414373223377 40.0 37.0 41.0 32.0 41.0 17 37.86316634297691 40.0 37.0 41.0 33.0 41.0 18 37.83761876198106 40.0 37.0 41.0 32.0 41.0 19 37.85569756890118 40.0 37.0 41.0 32.0 41.0 20 37.73343344644997 40.0 37.0 41.0 32.0 41.0 21 37.63481671329757 39.0 37.0 41.0 32.0 41.0 22 37.47785500656468 39.0 36.0 41.0 32.0 41.0 23 37.353916646042805 39.0 36.0 41.0 31.0 41.0 24 37.2155810126246 39.0 36.0 41.0 31.0 41.0 25 37.01348478937794 39.0 36.0 41.0 31.0 41.0 26 37.170307512258965 39.0 36.0 41.0 31.0 41.0 27 37.098446149350316 39.0 36.0 41.0 31.0 41.0 28 36.979343420149306 39.0 36.0 41.0 31.0 41.0 29 36.836580717598515 39.0 35.0 41.0 30.0 41.0 30 36.71558870287797 39.0 35.0 41.0 30.0 41.0 31 36.543325908743256 39.0 35.0 40.0 30.0 41.0 32 36.420900990085165 39.0 35.0 40.0 30.0 41.0 33 36.2272232172944 38.0 35.0 40.0 30.0 41.0 34 36.090708356229314 38.0 35.0 40.0 29.0 41.0 35 35.90951871597937 38.0 35.0 40.0 28.0 41.0 36 35.7731238228669 38.0 35.0 40.0 27.0 41.0 37 35.6077990355024 38.0 35.0 40.0 27.0 41.0 38 35.523842721734475 38.0 35.0 40.0 26.0 41.0 39 35.39217439816776 38.0 34.0 40.0 26.0 41.0 40 35.22613735351815 38.0 34.0 40.0 25.0 41.0 41 35.09962905014185 38.0 34.0 40.0 24.0 41.0 42 34.895085089158 38.0 34.0 40.0 24.0 41.0 43 34.53972854803822 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 2.0 12 3.0 13 8.0 14 9.0 15 16.0 16 47.0 17 114.0 18 245.0 19 589.0 20 1251.0 21 2498.0 22 4671.0 23 8244.0 24 13075.0 25 20007.0 26 29132.0 27 40665.0 28 55156.0 29 73001.0 30 92436.0 31 114721.0 32 141159.0 33 173498.0 34 216301.0 35 268254.0 36 347110.0 37 493246.0 38 679265.0 39 801230.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.0717822232103 20.731748581847366 13.484565661480637 23.71190353346169 2 19.097527793274804 22.76905050538947 34.71808230248982 23.4153393988459 3 19.96476465727337 24.44096751776798 31.94562012105857 23.648647703900078 4 13.982111072426806 16.105851443880027 36.13197034079008 33.780067142903086 5 13.277488111567399 38.06745330967532 34.73251201427311 13.922546564484172 6 32.882069265413016 36.874932710282984 13.89379899914848 16.349199025155517 7 26.608276670148257 32.291010373452686 21.709053945030067 19.391659011368994 8 27.088791665443217 34.354850662270636 19.06321528095292 19.493142391333222 9 24.936387622327462 14.412933048654136 21.383154989366478 39.26752433965193 10 16.80798555910239 27.02511636751581 33.38042564853305 22.786472424848746 11 33.72525660977278 22.350309218096985 23.076213207380967 20.848220964749274 12 21.042071278861172 26.724721088492444 30.777037183074174 21.456170449572213 13 31.25679713531071 20.676993977832495 25.916125902031766 22.150082984825033 14 20.86211934993589 22.487363515480478 27.277468536376997 29.37304859820663 15 23.617746867619978 29.034481697896087 24.82355063192909 22.524220802554844 16 22.509763126213837 27.76978457502961 26.157711716170923 23.562740582585633 17 22.194378844252793 26.57094398559266 26.90017072362488 24.33450644652967 18 23.053422092839533 25.475264649583117 28.84502181934616 22.626291438231185 19 23.269112726530395 24.960688822985748 29.668801760648556 22.101396689835305 20 24.00642625536395 24.644941001774352 29.36340082579339 21.985231917068308 21 22.970227533623884 25.422327741820016 29.720983625353227 21.88646109920287 22 22.192533183443302 25.758601548397557 29.3838708820441 22.664994386115037 23 22.644943798230123 25.939811882420223 30.07462342227461 21.34062089707505 24 22.796483736512343 26.03290589506859 28.140510716717632 23.030099651701434 25 22.857530366014114 25.909722018313992 29.011187221315705 22.221560394356192 26 22.52052948093586 26.58679988981964 29.056629627609965 21.83604100163453 27 21.903351692065478 26.597985712907462 28.72849350732881 22.77016908769825 28 22.035819801982967 26.348737609953144 28.98610301304127 22.629339575022616 29 22.379056783432677 26.384588172949602 28.50058236191451 22.73577268170321 30 22.20492148251306 26.484673325027856 29.817573207716542 21.492831984742537 31 22.55942818072375 26.10955674777787 29.716201685983183 21.6148133855152 32 22.191246813788204 26.058996827420927 28.910682600871656 22.839073757919213 33 22.000388707352304 26.043280745982543 29.398132806481065 22.55819774018409 34 21.62457301615932 26.25298696432142 29.781582821931487 22.340857197587777 35 21.355553970897283 27.73312303985928 28.973854536760108 21.937468452483323 36 22.834068102087414 25.981339250633745 28.98506832440565 22.19952432287319 37 21.97829670675386 26.28495045379486 28.97307152914396 22.763681310307316 38 21.81744457075103 25.235049098772215 30.227253978307893 22.72025235216886 39 21.284160455039284 25.23538467346485 30.798849538095418 22.681605333400448 40 20.704818712763444 25.775016743778934 30.528376335831968 22.991788207625653 41 21.43217685904884 24.758225425096235 30.666241605389327 23.143356110465596 42 20.368209331493265 26.33181905253282 30.184188559419788 23.115783056554122 43 20.663431167338516 25.948872399121353 29.749675261573483 23.63802117196665 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 182.0 1 393.0 2 604.0 3 1754.0 4 2904.0 5 2904.0 6 4505.0 7 6106.0 8 6662.5 9 7219.0 10 10488.5 11 13758.0 12 13758.0 13 24739.0 14 35720.0 15 55650.5 16 75581.0 17 69517.5 18 63454.0 19 63454.0 20 67770.0 21 72086.0 22 58059.5 23 44033.0 24 50045.0 25 56057.0 26 56057.0 27 62329.5 28 68602.0 29 75941.5 30 83281.0 31 92091.0 32 100901.0 33 100901.0 34 113978.0 35 127055.0 36 140031.0 37 153007.0 38 164649.0 39 176291.0 40 176291.0 41 184551.5 42 192812.0 43 207575.0 44 222338.0 45 232995.5 46 243653.0 47 243653.0 48 294787.5 49 345922.0 50 331618.0 51 317314.0 52 297965.5 53 278617.0 54 278617.0 55 252551.5 56 226486.0 57 199321.0 58 172156.0 59 154250.0 60 136344.0 61 136344.0 62 120800.5 63 105257.0 64 91944.0 65 78631.0 66 67618.0 67 56605.0 68 56605.0 69 48741.5 70 40878.0 71 34766.0 72 28654.0 73 23710.5 74 18767.0 75 18767.0 76 14858.0 77 10949.0 78 8613.5 79 6278.0 80 4962.5 81 3647.0 82 3647.0 83 2688.0 84 1729.0 85 1376.0 86 1023.0 87 769.5 88 516.0 89 516.0 90 425.0 91 334.0 92 232.5 93 131.0 94 86.0 95 41.0 96 41.0 97 32.0 98 23.0 99 16.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3575955.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.868295867237144 #Duplication Level Percentage of deduplicated Percentage of total 1 77.60404186570837 35.595651527897694 2 12.123853862505014 11.122010320330515 3 4.06587082459002 5.594836978207874 4 1.8771574399979514 3.44408051388846 5 1.0222697551125588 2.344488579181546 6 0.6293929832865881 1.7321510144491359 7 0.4346536486712838 1.3955775509920019 8 0.307138283336907 1.1270327721802051 9 0.2374841011119785 0.9803691912212182 >10 1.4314751809016573 12.50785873018664 >50 0.1470629010717443 4.708900979558641 >100 0.10653542977385475 9.57731270468897 >500 0.008424270574153516 2.6994724493920894 >1k 0.0040900444076906245 3.2946231300846542 >5k 3.0522719460377795E-4 0.8735036771637718 >10k+ 2.441817556830224E-4 3.002129880576616 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36732 1.0271941341543727 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 31350 0.8766888845077748 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 25555 0.7146342725230044 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13580 0.37975869383143807 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6709 0.18761421774043577 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6339 0.17726733138420367 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6279 0.1755894579210309 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6154 0.17209388820608762 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5715 0.15981744736720682 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4994 0.13965500125141395 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3702 0.10352479267776021 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 2.7964557719546248E-5 3 0.0 0.0 0.0 0.0 2.7964557719546248E-5 4 2.7964557719546248E-5 0.0 0.0 0.0 2.7964557719546248E-5 5 2.7964557719546248E-5 0.0 0.0 0.0 2.7964557719546248E-5 6 5.5929115439092495E-5 0.0 0.0 0.0 2.7964557719546248E-5 7 5.5929115439092495E-5 0.0 0.0 0.0 2.7964557719546248E-5 8 1.1185823087818499E-4 0.0 0.0 0.0 2.7964557719546248E-5 9 1.1185823087818499E-4 0.0 0.0 1.6778734631727748E-4 2.7964557719546248E-5 10 1.3982278859773123E-4 0.0 0.0 2.2371646175636998E-4 2.7964557719546248E-5 11 1.6778734631727748E-4 0.0 0.0 5.313265966713787E-4 2.7964557719546248E-5 12 1.9575190403682373E-4 0.0 0.0 9.507949624645724E-4 2.7964557719546248E-5 13 2.2371646175636998E-4 0.0 0.0 0.0010346886356232112 2.7964557719546248E-5 14 2.5168101947591623E-4 0.0 0.0 0.0012863696550991274 2.7964557719546248E-5 15 2.5168101947591623E-4 0.0 0.0 0.0015380506745750436 2.7964557719546248E-5 16 2.5168101947591623E-4 0.0 0.0 0.00201344815580733 2.7964557719546248E-5 17 2.5168101947591623E-4 0.0 0.0 0.0023210582907223385 2.7964557719546248E-5 18 3.0761013491500873E-4 0.0 0.0 0.002936278560552356 2.7964557719546248E-5 19 3.0761013491500873E-4 0.0 0.0 0.003915038080736475 2.7964557719546248E-5 20 3.3557469263455496E-4 0.0 0.0 0.006068309025141536 2.7964557719546248E-5 21 3.3557469263455496E-4 0.0 0.0 0.010179099009914833 2.7964557719546248E-5 22 3.3557469263455496E-4 0.0 0.0 0.01661094728541047 2.7964557719546248E-5 23 3.3557469263455496E-4 0.0 2.7964557719546248E-5 0.02175642590580698 2.7964557719546248E-5 24 3.3557469263455496E-4 0.0 5.5929115439092495E-5 0.029390750163243107 2.7964557719546248E-5 25 3.3557469263455496E-4 0.0 5.5929115439092495E-5 0.03445233511048098 2.7964557719546248E-5 26 3.3557469263455496E-4 0.0 5.5929115439092495E-5 0.04365267460021169 2.7964557719546248E-5 27 3.6353925035410124E-4 0.0 5.5929115439092495E-5 0.09740055453717958 2.7964557719546248E-5 28 3.6353925035410124E-4 0.0 5.5929115439092495E-5 0.21297807159206422 2.7964557719546248E-5 29 3.6353925035410124E-4 0.0 5.5929115439092495E-5 0.36591623776026266 2.7964557719546248E-5 30 4.4743292351273996E-4 0.0 5.5929115439092495E-5 0.5656111444355424 2.7964557719546248E-5 31 4.4743292351273996E-4 0.0 5.5929115439092495E-5 0.8632379322446732 2.7964557719546248E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 11385 0.0 20.441809 1 GACCGTT 660 0.0 17.378788 7 TAGACCG 140 1.873559E-9 17.178572 5 ACGTTTA 185 1.8189894E-12 17.0 26 GTATTGG 1550 0.0 16.351614 1 ACCGTTA 710 0.0 15.633802 8 TTATGCG 420 0.0 15.416668 4 TAGTACT 670 0.0 15.186567 4 GGACCGT 895 0.0 14.882682 6 TGTTACG 425 0.0 14.799999 16 TCTACAC 470 0.0 14.563828 3 GCTTATG 610 0.0 14.557376 2 ATTGGAC 1915 0.0 14.297651 3 CCGTTTA 740 0.0 14.25 27 TTGGACC 2385 0.0 14.1174 4 GTATTAG 745 0.0 13.90604 1 TAGGTCG 190 7.1413524E-9 13.631579 21 GTATCAA 17215 0.0 13.508278 2 CGTTCGC 630 0.0 13.5079365 23 CGTTTAC 790 0.0 13.348101 28 >>END_MODULE