##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088622_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2353005 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.719383511722246 31.0 31.0 34.0 30.0 34.0 2 31.898322782994512 31.0 31.0 34.0 30.0 34.0 3 31.98402000845727 31.0 31.0 34.0 30.0 34.0 4 35.66209889056759 37.0 35.0 37.0 33.0 37.0 5 35.56939020529068 37.0 35.0 37.0 33.0 37.0 6 35.6021041179258 37.0 35.0 37.0 33.0 37.0 7 35.47517791079917 37.0 35.0 37.0 33.0 37.0 8 35.49961177303066 37.0 35.0 37.0 33.0 37.0 9 37.11348339676286 39.0 37.0 39.0 33.0 39.0 10 36.976716156574255 39.0 37.0 39.0 33.0 39.0 11 37.02087245883455 39.0 37.0 39.0 33.0 39.0 12 36.920784273726575 39.0 37.0 39.0 33.0 39.0 13 36.9649813748802 39.0 37.0 39.0 33.0 39.0 14 38.014274087815366 40.0 37.0 41.0 33.0 41.0 15 37.975361293324916 40.0 37.0 41.0 33.0 41.0 16 37.87390719526733 40.0 37.0 41.0 32.0 41.0 17 37.89064324130208 40.0 37.0 41.0 33.0 41.0 18 37.87286554852199 40.0 37.0 41.0 33.0 41.0 19 37.88612646381967 40.0 37.0 41.0 32.0 41.0 20 37.76752153097847 40.0 37.0 41.0 32.0 41.0 21 37.666680691286246 40.0 37.0 41.0 32.0 41.0 22 37.51361939307396 39.0 36.0 41.0 32.0 41.0 23 37.37515814883521 39.0 36.0 41.0 31.0 41.0 24 37.237802724601096 39.0 36.0 41.0 31.0 41.0 25 37.045920854396826 39.0 36.0 41.0 31.0 41.0 26 37.19858478838761 39.0 36.0 41.0 31.0 41.0 27 37.13153775703834 39.0 36.0 41.0 31.0 41.0 28 37.00884995994484 39.0 36.0 41.0 31.0 41.0 29 36.865795865287154 39.0 35.0 41.0 30.0 41.0 30 36.753206644269774 39.0 35.0 41.0 30.0 41.0 31 36.57569448428711 39.0 35.0 40.0 30.0 41.0 32 36.44787155148416 39.0 35.0 40.0 30.0 41.0 33 36.245487366155196 38.0 35.0 40.0 30.0 41.0 34 36.10283743553456 38.0 35.0 40.0 29.0 41.0 35 35.915916030777666 38.0 35.0 40.0 28.0 41.0 36 35.77964985199777 38.0 35.0 40.0 27.0 41.0 37 35.61079385721662 38.0 35.0 40.0 27.0 41.0 38 35.53606048435936 38.0 35.0 40.0 26.0 41.0 39 35.404854218329326 38.0 34.0 40.0 25.0 41.0 40 35.24103008705889 38.0 34.0 40.0 25.0 41.0 41 35.117468088678095 38.0 34.0 40.0 24.0 41.0 42 34.911389053571924 38.0 34.0 40.0 23.0 41.0 43 34.55514884158767 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 6.0 14 7.0 15 9.0 16 21.0 17 54.0 18 137.0 19 362.0 20 815.0 21 1593.0 22 2967.0 23 5212.0 24 8432.0 25 12974.0 26 18736.0 27 26656.0 28 36082.0 29 48004.0 30 60437.0 31 75107.0 32 91653.0 33 113082.0 34 140035.0 35 175360.0 36 228551.0 37 325359.0 38 452801.0 39 528552.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.91414807873336 21.018442374750585 13.526533092789858 23.54087645372619 2 19.01283677680243 22.6125316350794 35.152198996602216 23.222432591515954 3 19.96969832193302 24.64146910015066 31.758751043877936 23.63008153403839 4 14.005835091723137 16.134687346605723 36.00396089256079 33.85551666911035 5 13.344680525540745 37.91925644016906 34.82670032575366 13.909362708536529 6 32.89844262974367 36.67455020282575 13.977828351405968 16.449178816024617 7 26.387406741592134 32.26754724278104 21.986651112088584 19.358394903538244 8 26.70177071446937 34.63549801211642 19.214918795327677 19.447812478086533 9 24.58099324055835 14.562272498358483 21.76442463998164 39.09230962110153 10 16.79401446235771 26.85612652756794 33.626490381448406 22.72336862862595 11 33.394106684856176 22.337904084351713 23.354646505213548 20.91334272557857 12 20.924264929313793 26.711800442412997 30.984422047551963 21.379512580721247 13 31.108136191805798 20.67781411429215 26.15625551156925 22.057794182332806 14 20.736505022301273 22.410279621165277 27.52051100613896 29.332704350394494 15 23.475258233620412 28.911880765234244 25.10449404059915 22.508366960546194 16 22.421711811067123 27.738190101593496 26.408826160590394 23.431271926748988 17 21.942707304064378 26.47257443141855 27.14898608375248 24.435732180764596 18 23.073219138930856 25.40700083510235 29.037549856460142 22.482230169506654 19 23.12009536741316 24.844188601384186 29.923565823277045 22.11215020792561 20 23.869647535810593 24.56552366017072 29.629006313203753 21.93582249081494 21 22.95260741052399 25.33743022220522 29.885826846946777 21.824135520324013 22 21.97160652017314 25.64065949711114 29.617786617538002 22.76994736517772 23 22.546360929959775 25.827696923720943 30.453271455011784 21.1726706913075 24 22.700291754586157 25.919536932560703 28.434321219036935 22.945850093816205 25 22.73688326204152 25.78838549004358 29.20244538366897 22.272285864245934 26 22.494724830588968 26.398711434952325 29.353996272851095 21.7525674616076 27 21.744322685247162 26.46828204784945 29.039972290751614 22.74742297615177 28 21.94164483288391 26.291019356099966 29.255653940386868 22.51168187062926 29 22.38359034511189 26.13755601879299 28.79462644575766 22.68422719033746 30 22.078066132456158 26.267050006268576 30.044092553989472 21.61079130728579 31 22.544703474918244 25.85481118824652 30.049149916808503 21.55133542002673 32 22.169268658587633 25.730587057826053 29.2317270894027 22.868417194183607 33 21.955626953618886 25.86445842656518 29.71595895461336 22.46395566520258 34 21.601611556286535 26.057403192938395 30.06534197759886 22.275643273176215 35 21.308412009324247 27.590889097133243 29.217659970973287 21.883038922569227 36 22.832165677505998 25.78562306497436 29.21863744445932 22.16357381306032 37 21.930637631454246 26.057318195243955 29.23686944991617 22.77517472338563 38 21.856009655738088 25.00287929689907 30.357351556839017 22.78375949052382 39 21.267868109077543 24.96220790011071 31.013576256744035 22.756347734067713 40 20.625880522990812 25.645334370305207 30.654163505814903 23.074621600889074 41 21.517378841098935 24.645378994094784 30.7372487521276 23.099993412678682 42 20.315468942904925 26.40619123206283 30.165214268562966 23.11312555646928 43 20.70157096988744 26.073255262950994 29.63716609186976 23.58800767529181 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 152.0 1 286.5 2 421.0 3 1279.0 4 2137.0 5 2137.0 6 3242.5 7 4348.0 8 4800.5 9 5253.0 10 7369.5 11 9486.0 12 9486.0 13 16784.0 14 24082.0 15 36664.5 16 49247.0 17 45849.5 18 42452.0 19 42452.0 20 45589.0 21 48726.0 22 39398.0 23 30070.0 24 33779.5 25 37489.0 26 37489.0 27 41262.0 28 45035.0 29 49855.5 30 54676.0 31 60853.0 32 67030.0 33 67030.0 34 75068.0 35 83106.0 36 91932.5 37 100759.0 38 107996.5 39 115234.0 40 115234.0 41 120286.0 42 125338.0 43 134787.5 44 144237.0 45 152700.0 46 161163.0 47 161163.0 48 196756.0 49 232349.0 50 221994.0 51 211639.0 52 198644.0 53 185649.0 54 185649.0 55 167429.5 56 149210.0 57 129493.0 58 109776.0 59 98304.5 60 86833.0 61 86833.0 62 76988.0 63 67143.0 64 58720.5 65 50298.0 66 43157.0 67 36016.0 68 36016.0 69 31202.0 70 26388.0 71 22424.0 72 18460.0 73 15329.5 74 12199.0 75 12199.0 76 9924.5 77 7650.0 78 5954.5 79 4259.0 80 3271.0 81 2283.0 82 2283.0 83 1731.5 84 1180.0 85 886.5 86 593.0 87 454.0 88 315.0 89 315.0 90 259.0 91 203.0 92 144.5 93 86.0 94 54.5 95 23.0 96 23.0 97 16.0 98 9.0 99 6.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2353005.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.666481572801594 #Duplication Level Percentage of deduplicated Percentage of total 1 80.74337877102687 40.909829126279725 2 10.89887625042672 11.044154254129806 3 3.3115485810385694 5.033535454758837 4 1.4645536505578438 2.9681512219347317 5 0.7976622545133295 2.020736995980949 6 0.49379459648806634 1.5011300894226967 7 0.3340974801440255 1.18492806748657 8 0.2649176314347939 1.0737955433120983 9 0.19487558040912384 0.8886294003409099 >10 1.2737398543446905 12.449571918285578 >50 0.1268617303695124 4.458804730517419 >100 0.08544812779723518 8.006630719660487 >500 0.006802334486867374 2.2870742256655148 >1k 0.003107239210050485 3.198440392611763 >5k 8.397943810947257E-5 0.3820938502814106 >10k+ 2.5193831432841773E-4 2.59249400933141 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 23479 0.9978304338494818 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 20898 0.8881409091778385 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16552 0.7034409191650677 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8980 0.3816396480245473 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 4683 0.19902210152549613 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 4618 0.19625967645627612 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 4617 0.19621717760905738 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4304 0.1829150384295826 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4015 0.1706328715833583 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3549 0.15082840877941187 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2516 0.10692709960242329 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2515 0.10688460075520452 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 4.249884721876919E-5 0.0 2 0.0 0.0 0.0 4.249884721876919E-5 0.0 3 0.0 0.0 0.0 4.249884721876919E-5 0.0 4 0.0 0.0 0.0 1.2749654165630756E-4 0.0 5 0.0 0.0 0.0 1.2749654165630756E-4 0.0 6 4.249884721876919E-5 0.0 0.0 1.2749654165630756E-4 0.0 7 4.249884721876919E-5 0.0 0.0 1.2749654165630756E-4 0.0 8 4.249884721876919E-5 0.0 0.0 1.2749654165630756E-4 0.0 9 4.249884721876919E-5 0.0 0.0 3.824896249689227E-4 0.0 10 8.499769443753838E-5 0.0 0.0 4.249884721876919E-4 0.0 11 1.2749654165630756E-4 0.0 0.0 6.799815555003071E-4 0.0 12 1.2749654165630756E-4 0.0 0.0 9.349746388129222E-4 0.0 13 1.2749654165630756E-4 0.0 0.0 0.0012324665693443065 0.0 14 1.6999538887507677E-4 0.0 0.0 0.0014874596526569218 0.0 15 1.6999538887507677E-4 0.0 0.0 0.001997445819282152 0.0 16 1.6999538887507677E-4 0.0 0.0 0.003102415846970151 0.0 17 1.6999538887507677E-4 0.0 0.0 0.004079889333001842 0.0 18 1.6999538887507677E-4 0.0 0.0 0.004504877805189534 0.0 19 1.6999538887507677E-4 0.0 0.0 0.005567348985658764 0.0 20 1.6999538887507677E-4 0.0 0.0 0.009647238318660606 0.0 21 1.6999538887507677E-4 0.0 0.0 0.016532051568101214 0.0 22 1.6999538887507677E-4 0.0 0.0 0.027411756456106127 0.0 23 1.6999538887507677E-4 0.0 0.0 0.03718649131642304 0.0 24 2.1249423609384595E-4 0.0 0.0 0.051083614356960565 0.0 25 2.549930833126151E-4 0.0 0.0 0.06073085267562117 0.0 26 2.549930833126151E-4 0.0 0.0 0.07292802182740793 0.0 27 2.549930833126151E-4 0.0 0.0 0.12532910044815035 0.0 28 3.3999077775015353E-4 0.0 0.0 0.24632331847998623 0.0 29 3.824896249689227E-4 0.0 0.0 0.4011891177451812 0.0 30 4.249884721876919E-4 0.0 0.0 0.6200156820746238 0.0 31 4.674873194064611E-4 0.0 0.0 0.9538016281308369 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7580 0.0 21.16029 1 GTACTAA 80 1.6178437E-5 18.5 1 TCACGTT 160 1.8189894E-12 18.5 24 CGAATTA 85 2.7250782E-5 17.411764 15 ACGTTTA 190 1.8189894E-12 16.552631 26 TAATACT 680 0.0 16.051472 4 ATAACGC 110 1.45307495E-5 15.136364 3 TTCGTTA 320 0.0 15.03125 30 ATCATAC 165 1.6474587E-8 14.575757 3 ATACTGG 615 0.0 14.439024 6 ACTGACG 90 8.2785566E-4 14.388888 8 GTATCAA 11195 0.0 14.310854 2 GTATTGG 1165 0.0 14.133048 1 CACGTTT 210 1.364242E-10 14.095238 25 CGTTTAT 210 1.364242E-10 14.095238 27 TATACGG 250 0.0 14.059999 2 CTAGACA 120 3.3032476E-5 13.874999 4 CTGTGCG 175 3.5706762E-8 13.742857 9 TCTATAC 230 4.0017767E-11 13.673913 3 TCGCATA 95 0.0012457517 13.631579 18 >>END_MODULE