##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088620_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4156266 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.716740458863796 31.0 31.0 34.0 30.0 34.0 2 31.891789649651876 31.0 31.0 34.0 30.0 34.0 3 31.973861634457467 31.0 31.0 34.0 30.0 34.0 4 35.65347333399739 37.0 35.0 37.0 33.0 37.0 5 35.56241419581904 37.0 35.0 37.0 33.0 37.0 6 35.59579295454141 37.0 35.0 37.0 33.0 37.0 7 35.464778722054845 37.0 35.0 37.0 33.0 37.0 8 35.488934538838464 37.0 35.0 37.0 33.0 37.0 9 37.10157939843119 39.0 37.0 39.0 33.0 39.0 10 36.96982507856812 39.0 37.0 39.0 33.0 39.0 11 37.01315844558553 39.0 37.0 39.0 33.0 39.0 12 36.9162346683297 39.0 37.0 39.0 33.0 39.0 13 36.95972466632309 39.0 37.0 39.0 33.0 39.0 14 38.00101870284529 40.0 37.0 41.0 33.0 41.0 15 37.96145819348425 40.0 37.0 41.0 33.0 41.0 16 37.86675419715677 40.0 37.0 41.0 32.0 41.0 17 37.890893412500546 40.0 37.0 41.0 33.0 41.0 18 37.871753155356274 40.0 37.0 41.0 33.0 41.0 19 37.89399836295367 40.0 37.0 41.0 32.0 41.0 20 37.77368724715887 40.0 37.0 41.0 32.0 41.0 21 37.673288956962814 40.0 37.0 41.0 32.0 41.0 22 37.524195515878915 39.0 36.0 41.0 32.0 41.0 23 37.393619898245205 39.0 36.0 41.0 32.0 41.0 24 37.25519588977222 39.0 36.0 41.0 31.0 41.0 25 37.060136670752065 39.0 36.0 41.0 31.0 41.0 26 37.212261679112935 39.0 36.0 41.0 31.0 41.0 27 37.14237755716309 39.0 36.0 41.0 31.0 41.0 28 37.02245669550505 39.0 36.0 41.0 31.0 41.0 29 36.87481551950717 39.0 35.0 41.0 30.0 41.0 30 36.75219511936916 39.0 35.0 41.0 30.0 41.0 31 36.57010162487194 39.0 35.0 40.0 30.0 41.0 32 36.443161000763666 39.0 35.0 40.0 30.0 41.0 33 36.238375022195406 38.0 35.0 40.0 30.0 41.0 34 36.0895772792213 38.0 35.0 40.0 29.0 41.0 35 35.902016136599535 38.0 35.0 40.0 28.0 41.0 36 35.76420590019984 38.0 35.0 40.0 27.0 41.0 37 35.59601863788314 38.0 35.0 40.0 27.0 41.0 38 35.51405251733166 38.0 35.0 40.0 26.0 41.0 39 35.37308463895237 38.0 34.0 40.0 25.0 41.0 40 35.19422770342418 38.0 34.0 40.0 25.0 41.0 41 35.0612063809198 38.0 34.0 40.0 24.0 41.0 42 34.84288012364945 38.0 34.0 40.0 23.0 41.0 43 34.490836005202745 38.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 3.0 12 2.0 13 5.0 14 13.0 15 24.0 16 51.0 17 146.0 18 269.0 19 665.0 20 1399.0 21 2886.0 22 5292.0 23 9291.0 24 15202.0 25 23151.0 26 33750.0 27 47489.0 28 64557.0 29 85135.0 30 107471.0 31 131542.0 32 161764.0 33 200440.0 34 248961.0 35 308934.0 36 402586.0 37 575761.0 38 792166.0 39 937309.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.12329047274645 20.87508354855055 13.532194522679733 23.46943145602327 2 18.88293482659676 22.875532990429388 35.06933868044057 23.172193502533283 3 20.050112288289537 24.59447975658921 32.04732324639472 23.308084708726533 4 13.924325343950555 15.974314444744392 36.08229117193173 34.01906903937332 5 13.254036194988483 37.98811240666502 34.762717304426616 13.995134093919878 6 32.83028564581766 36.6157267123904 13.898340481576493 16.65564716021544 7 26.515675368227154 32.329619904019616 21.772932723747708 19.38177200400552 8 26.974260069013873 34.30786191259173 19.144708254957695 19.573169763436702 9 24.633457050150305 14.470633015307492 21.835248273329956 39.06066166121225 10 16.69087108476695 26.947096263809872 33.60244507930917 22.759587572114008 11 33.32315592890349 22.1571718460753 23.561557417162422 20.958114807858784 12 21.008809349545963 26.644925998480367 31.00246711832207 21.3437975336516 13 31.260294697211393 20.547337441828795 26.36101731698597 21.831350543973844 14 20.743932173734787 22.509603572052413 27.654341661481723 29.092122592731073 15 23.398887366689237 28.915088687778884 25.217659312469415 22.468364633062464 16 22.292028469785137 27.746178901927838 26.56042707564915 23.401365552637873 17 21.994092774620295 26.32521595104837 27.2433236948742 24.43736757945714 18 22.998912966590684 25.278050057431358 29.32107810231588 22.401958873662082 19 23.04402557487899 24.779982801870716 30.158223751800296 22.017767871449998 20 23.915817707528824 24.383882071070524 29.954699723261214 21.745600498139435 21 22.820050497249213 25.238687802946203 30.31425322633344 21.62700847347114 22 21.87932629913485 25.637771980907864 29.90402924163179 22.578872478325497 23 22.48008188118855 25.677495136259328 30.75705452923369 21.085368453318434 24 22.626006131465118 25.847407264116395 28.60721618876174 22.919370415656743 25 22.64284817189275 25.71673709045571 29.53155548754579 22.108859250105745 26 22.385622094447275 26.41224117994373 29.628758120870994 21.573378604738004 27 21.64291217164638 26.506003225010144 29.190985370041282 22.6600992333022 28 21.860775994606698 26.21492464630512 29.48211206886181 22.44218729022637 29 22.14911172672779 26.22678625477773 28.9759125137804 22.648189504714086 30 22.024071606581487 26.27726425594512 30.345699721817613 21.352964415655784 31 22.47375408599931 25.900507811578947 30.27339924826756 21.352338854154183 32 22.11516298523723 25.76820155399101 29.31994727960145 22.79668818117031 33 21.88534131357329 25.86687185083919 29.90147887550989 22.346307960077628 34 21.42468744781975 26.334262532763788 30.15211249713084 22.08893752228563 35 21.14448401521943 27.99416591719587 29.21097927803466 21.650370789550045 36 22.72595161137425 26.033223090148706 29.293818056880866 21.947007241596182 37 21.83175956495566 26.357528608611673 29.276422635124895 22.534289191307774 38 21.742472690631445 25.177069995038813 30.48688414071669 22.593573173613045 39 21.176748552667227 25.13664909801249 31.07900216203679 22.607600187283488 40 20.47371366510228 25.839587745346428 30.690745010064326 22.995953579486972 41 21.517246489998474 24.76342948213613 30.813908445705835 22.905415582159563 42 20.25948291086278 26.566225549567807 30.2509993344988 22.92329220507061 43 20.585568873599524 26.30231077606679 29.685154896245812 23.426965454087874 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 183.0 1 475.5 2 768.0 3 2324.5 4 3881.0 5 3881.0 6 5932.5 7 7984.0 8 8470.5 9 8957.0 10 13006.0 11 17055.0 12 17055.0 13 30742.0 14 44429.0 15 68528.5 16 92628.0 17 85543.0 18 78458.0 19 78458.0 20 84369.0 21 90280.0 22 72512.0 23 54744.0 24 61788.0 25 68832.0 26 68832.0 27 74761.0 28 80690.0 29 89427.0 30 98164.0 31 108305.5 32 118447.0 33 118447.0 34 132735.0 35 147023.0 36 162251.0 37 177479.0 38 189483.5 39 201488.0 40 201488.0 41 209781.0 42 218074.0 43 233916.0 44 249758.0 45 262204.0 46 274650.0 47 274650.0 48 342681.5 49 410713.0 50 393949.5 51 377186.0 52 353292.0 53 329398.0 54 329398.0 55 296425.0 56 263452.0 57 227562.0 58 191672.0 59 171291.0 60 150910.0 61 150910.0 62 134327.5 63 117745.0 64 102794.0 65 87843.0 66 75911.0 67 63979.0 68 63979.0 69 55299.5 70 46620.0 71 39389.5 72 32159.0 73 26730.5 74 21302.0 75 21302.0 76 17048.0 77 12794.0 78 10121.5 79 7449.0 80 5801.0 81 4153.0 82 4153.0 83 3193.0 84 2233.0 85 1717.5 86 1202.0 87 950.0 88 698.0 89 698.0 90 609.0 91 520.0 92 337.5 93 155.0 94 118.0 95 81.0 96 81.0 97 51.5 98 22.0 99 15.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 4156266.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 43.97909842041241 #Duplication Level Percentage of deduplicated Percentage of total 1 76.87230487098802 33.807746617251304 2 12.311280821153977 10.82878061829733 3 4.388819544380162 5.790489800751742 4 1.9693125269093448 3.4643435776598857 5 1.0436425745551596 2.294922975104698 6 0.6715792541975256 1.7721270070476087 7 0.43163379758256765 1.3288005685822077 8 0.3224270779014193 1.1344041753946 9 0.2459911589325787 0.9736622450322471 >10 1.4588547784629684 12.192097408955298 >50 0.15306100001634987 4.696440850709115 >100 0.11621724298673215 10.118996021302538 >500 0.00911183920828232 2.816483433559565 >1k 0.005159716153702856 4.218822810130741 >5k 3.8423418165872334E-4 1.331656325031998 >10k+ 2.1956238951927049E-4 3.2302255651891967 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 45213 1.0878273912208698 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 39310 0.9458008703004092 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 32247 0.7758646823855836 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 17040 0.4099833841241153 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 9720 0.23386376136657278 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9332 0.22452845895811288 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 8715 0.20968340332404137 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7881 0.1896173151574033 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7483 0.1800414121714058 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6563 0.15790615903794417 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5469 0.13158445585532783 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4737 0.11397249357957359 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4498 0.10822213977642432 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4392 0.10567177365452549 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4348 0.10461313111335992 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4322 0.1039875696117621 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.4060057753762632E-5 0.0 3 0.0 0.0 0.0 4.8120115507525264E-5 0.0 4 0.0 0.0 0.0 4.8120115507525264E-5 0.0 5 0.0 7.21801732612879E-5 0.0 7.21801732612879E-5 0.0 6 4.8120115507525264E-5 7.21801732612879E-5 0.0 7.21801732612879E-5 0.0 7 4.8120115507525264E-5 7.21801732612879E-5 0.0 7.21801732612879E-5 0.0 8 9.624023101505053E-5 7.21801732612879E-5 0.0 7.21801732612879E-5 0.0 9 9.624023101505053E-5 7.21801732612879E-5 0.0 1.2030028876881317E-4 0.0 10 1.2030028876881317E-4 7.21801732612879E-5 0.0 1.6842040427633842E-4 0.0 11 2.165405197838637E-4 7.21801732612879E-5 0.0 3.849609240602021E-4 0.0 12 2.165405197838637E-4 7.21801732612879E-5 0.0 5.774413860903032E-4 0.0 13 2.165405197838637E-4 7.21801732612879E-5 0.0 6.49621559351591E-4 0.0 14 2.4060057753762633E-4 7.21801732612879E-5 0.0 8.180419636279294E-4 0.0 15 2.4060057753762633E-4 7.21801732612879E-5 0.0 0.0011548827721806064 0.0 16 2.6466063529138894E-4 7.21801732612879E-5 0.0 0.0017804442737784348 0.0 17 2.6466063529138894E-4 7.21801732612879E-5 0.0 0.0029112669882052785 0.0 18 2.6466063529138894E-4 7.21801732612879E-5 0.0 0.0034165282010342937 4.8120115507525264E-5 19 2.6466063529138894E-4 7.21801732612879E-5 0.0 0.004763891435245001 4.8120115507525264E-5 20 3.127807507989142E-4 7.21801732612879E-5 0.0 0.007482677961420179 4.8120115507525264E-5 21 3.3684080855267683E-4 7.21801732612879E-5 0.0 0.012366869685433993 4.8120115507525264E-5 22 3.849609240602021E-4 7.21801732612879E-5 0.0 0.020499169206205762 4.8120115507525264E-5 23 3.849609240602021E-4 7.21801732612879E-5 0.0 0.026851024453199097 4.8120115507525264E-5 24 3.849609240602021E-4 7.21801732612879E-5 0.0 0.03630662715042781 4.8120115507525264E-5 25 3.849609240602021E-4 9.624023101505053E-5 0.0 0.044583287017722156 4.8120115507525264E-5 26 4.330810395677274E-4 9.624023101505053E-5 0.0 0.055699033699960494 4.8120115507525264E-5 27 4.330810395677274E-4 9.624023101505053E-5 0.0 0.10911236191331354 4.8120115507525264E-5 28 4.5714109732149E-4 9.624023101505053E-5 0.0 0.2239269575142688 4.8120115507525264E-5 29 4.5714109732149E-4 9.624023101505053E-5 0.0 0.3695143669822865 4.8120115507525264E-5 30 4.8120115507525266E-4 9.624023101505053E-5 0.0 0.5637512132284123 4.8120115507525264E-5 31 5.052612128290153E-4 9.624023101505053E-5 0.0 0.8525681465045789 4.8120115507525264E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14245 0.0 20.805195 1 TAATACT 1070 0.0 15.906542 4 GTATTGG 2175 0.0 15.650575 1 AATACTG 1125 0.0 15.293334 5 CTAATAC 1020 0.0 14.509805 3 ATTGGAC 2465 0.0 14.334686 3 TTATGCG 375 0.0 13.813333 4 CCGTTTA 670 0.0 13.80597 27 GTATCAA 21430 0.0 13.795147 2 ACCGTTA 645 0.0 13.767442 8 ATACTGG 995 0.0 13.758794 6 TAGAACA 425 0.0 13.494118 4 TCTAATA 995 0.0 13.386934 2 TTGGACC 2985 0.0 13.201005 4 GTATTAG 815 0.0 13.165644 1 TTCGTTA 665 0.0 13.075189 30 TCGCTAA 85 0.009410142 13.058824 14 GACCGTT 720 0.0 12.847222 7 CGTTCGC 695 0.0 12.776979 23 CTCTAAT 1000 0.0 12.765001 1 >>END_MODULE