##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088619_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3941254 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71410063903519 31.0 31.0 34.0 30.0 34.0 2 31.884892219582905 31.0 31.0 34.0 30.0 34.0 3 31.958979045755488 31.0 31.0 34.0 30.0 34.0 4 35.6396215519223 37.0 35.0 37.0 33.0 37.0 5 35.555001783696255 37.0 35.0 37.0 33.0 37.0 6 35.59379527429595 37.0 35.0 37.0 33.0 37.0 7 35.45674574640457 37.0 35.0 37.0 33.0 37.0 8 35.48968399397755 37.0 35.0 37.0 33.0 37.0 9 37.095523911932595 39.0 37.0 39.0 33.0 39.0 10 36.96091193310556 39.0 37.0 39.0 33.0 39.0 11 37.00622263878451 39.0 37.0 39.0 33.0 39.0 12 36.90945013947338 39.0 37.0 39.0 33.0 39.0 13 36.955053137909914 39.0 37.0 39.0 33.0 39.0 14 37.973969198635764 40.0 37.0 41.0 33.0 41.0 15 37.94248683287096 40.0 37.0 41.0 33.0 41.0 16 37.844389374549316 40.0 37.0 41.0 32.0 41.0 17 37.8860319583564 40.0 37.0 41.0 33.0 41.0 18 37.86913860410925 40.0 37.0 41.0 33.0 41.0 19 37.89838056618528 40.0 37.0 41.0 32.0 41.0 20 37.78344658831935 40.0 37.0 41.0 32.0 41.0 21 37.68924915775538 40.0 37.0 41.0 32.0 41.0 22 37.534152581893984 39.0 36.0 41.0 32.0 41.0 23 37.40581627065903 39.0 36.0 41.0 32.0 41.0 24 37.26223709509714 39.0 36.0 41.0 31.0 41.0 25 37.06396771179934 39.0 36.0 41.0 31.0 41.0 26 37.20518266521265 39.0 36.0 41.0 31.0 41.0 27 37.131459175176225 39.0 36.0 41.0 31.0 41.0 28 37.00986767155834 39.0 36.0 41.0 31.0 41.0 29 36.86032135964848 39.0 35.0 41.0 30.0 41.0 30 36.72677782249 39.0 35.0 41.0 30.0 41.0 31 36.528059851001736 39.0 35.0 40.0 30.0 41.0 32 36.401117258618704 38.0 35.0 40.0 30.0 41.0 33 36.19061217571869 38.0 35.0 40.0 30.0 41.0 34 36.04416893709464 38.0 35.0 40.0 29.0 41.0 35 35.849638719047284 38.0 35.0 40.0 28.0 41.0 36 35.70749284364824 38.0 35.0 40.0 27.0 41.0 37 35.52706016917458 38.0 35.0 40.0 27.0 41.0 38 35.42479703160466 38.0 34.0 40.0 26.0 41.0 39 35.28052467564892 38.0 34.0 40.0 25.0 41.0 40 35.09044431036416 38.0 34.0 40.0 24.0 41.0 41 34.946600498217066 38.0 34.0 40.0 24.0 41.0 42 34.712211900070386 38.0 33.0 40.0 23.0 41.0 43 34.34434598734312 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 3.0 13 6.0 14 12.0 15 15.0 16 46.0 17 84.0 18 238.0 19 596.0 20 1263.0 21 2748.0 22 5111.0 23 8864.0 24 14100.0 25 22273.0 26 32224.0 27 45470.0 28 61702.0 29 81371.0 30 102901.0 31 126578.0 32 155414.0 33 192224.0 34 238982.0 35 295938.0 36 386261.0 37 552974.0 38 739273.0 39 874581.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.20253249346528 20.791225330821103 13.853382705098428 23.15285947061519 2 19.045156693783248 23.12685251952805 34.825920887108516 23.002069899580185 3 20.04159082363126 24.421110641435444 32.33980859898905 23.197489935944247 4 13.780131907255914 15.95738310700097 35.935745323696466 34.32673966204665 5 13.093776752272246 38.25559073330468 34.60449389965732 14.046138614765757 6 32.77398513265067 36.64678805273652 13.58022091446022 16.999005900152593 7 26.312513732938807 32.601704939595365 21.45299440228922 19.632786925176607 8 27.2608159737992 34.24476067769294 18.832001185409517 19.662422163098345 9 24.596740022338068 14.353528090298164 21.68330181206286 39.366430075300904 10 16.843953726402816 27.078716570918797 33.14698824282829 22.930341459850087 11 33.41601429392777 22.216685349383724 23.332066393082 21.035233963606505 12 21.11117426078096 26.900346945413823 30.815877383188194 21.172601410617027 13 31.645461063915192 20.56946849911221 26.21592011070588 21.569150326266715 14 20.62528829656754 22.655606565829046 27.671827291516866 29.04727784608655 15 23.15811160610303 29.062805898833215 25.441598029459662 22.337484465604092 16 22.028420396148025 27.83814491529853 26.623049415236878 23.510385273316565 17 21.99492851767483 26.37178420878228 27.039033769455102 24.594253504087785 18 23.096659083631756 25.14879781917126 29.452656438788267 22.30188665840872 19 23.03071560472885 24.558934795879686 30.462766419012834 21.94758318037863 20 23.952655677609208 24.12678807303462 30.262144992431345 21.658411256924825 21 22.761486572547724 25.023406255978426 30.725322448134527 21.489784723339323 22 21.716235492561506 25.407065872942976 30.2918563482587 22.584842286236817 23 22.3877476559491 25.676802357828244 31.19798926940512 20.73746071681754 24 22.48210848628381 25.703392879525143 28.882507953052507 22.931990681138544 25 22.405229401606697 25.781845067585092 29.843572629422006 21.96935290138621 26 22.164823683020686 26.485276006063046 29.892364206925002 21.457536103991266 27 21.29154832446729 26.52891693861903 29.573100338115736 22.606434398797944 28 21.582014252316647 26.155051158844365 29.804676379649724 22.458258209189257 29 21.980288507160413 26.070433420429133 29.23584727094473 22.713430801465726 30 21.80009205192053 26.233858563797206 30.762467986077528 21.203581398204737 31 22.307113421261356 25.8081057450243 30.69449469635806 21.19028613735628 32 21.934059565813318 25.76837219829019 29.640033349791718 22.657534886104777 33 21.687259943155148 25.82853071636591 30.19186279290804 22.292346547570897 34 21.077580891766935 26.30769293224948 30.644180760742646 21.970545415240935 35 20.768719803392525 28.10580084409683 29.6319648517959 21.493514500714745 36 22.6222922958023 25.81876225181123 29.6836742823477 21.875271170038772 37 21.66828121202034 26.468301713109582 29.579215143200617 22.284201931669465 38 21.484811686838757 25.113428365692748 30.939974941985472 22.461785005483026 39 20.982661863457672 25.016149682309237 31.657690674084947 22.343497780148144 40 20.097664347438656 25.729171476895424 31.1778941423212 22.995270033344717 41 21.247983509816926 24.645633090381892 31.34695201070522 22.75943138909596 42 20.006754195492093 26.516230621015545 30.71639128054168 22.760623902950687 43 20.265275975615882 26.28414712677742 30.02894510224411 23.421631795362593 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 212.0 1 490.0 2 768.0 3 2301.5 4 3835.0 5 3835.0 6 5879.5 7 7924.0 8 8615.0 9 9306.0 10 13591.5 11 17877.0 12 17877.0 13 32669.5 14 47462.0 15 74172.5 16 100883.0 17 91562.0 18 82241.0 19 82241.0 20 87202.5 21 92164.0 22 71723.0 23 51282.0 24 57198.0 25 63114.0 26 63114.0 27 69567.5 28 76021.0 29 82567.5 30 89114.0 31 98204.5 32 107295.0 33 107295.0 34 118832.0 35 130369.0 36 143812.5 37 157256.0 38 169565.0 39 181874.0 40 181874.0 41 189783.0 42 197692.0 43 214563.0 44 231434.0 45 247409.0 46 263384.0 47 263384.0 48 336560.0 49 409736.0 50 388222.5 51 366709.0 52 339806.0 53 312903.0 54 312903.0 55 280423.0 56 247943.0 57 213545.5 58 179148.0 59 160246.0 60 141344.0 61 141344.0 62 125399.5 63 109455.0 64 95512.5 65 81570.0 66 70468.5 67 59367.0 68 59367.0 69 51521.0 70 43675.0 71 37335.0 72 30995.0 73 25486.5 74 19978.0 75 19978.0 76 15992.0 77 12006.0 78 9463.0 79 6920.0 80 5415.5 81 3911.0 82 3911.0 83 2926.0 84 1941.0 85 1476.0 86 1011.0 87 787.0 88 563.0 89 563.0 90 468.5 91 374.0 92 245.5 93 117.0 94 82.0 95 47.0 96 47.0 97 36.0 98 25.0 99 17.0 100 9.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3941254.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.302630980429775 #Duplication Level Percentage of deduplicated Percentage of total 1 76.35891147319786 32.30182854117995 2 12.322855535920477 10.425784207223803 3 4.431599713249284 5.624049819676886 4 2.0642976639807418 3.4930088925256224 5 1.104097061635486 2.335310528247139 6 0.7227459090570089 1.8344432090072342 7 0.46927962656940736 1.3896234008579669 8 0.34561344372647934 1.1696286377469431 9 0.261818168962276 0.9968037647024676 >10 1.6141077852512553 13.177987607906037 >50 0.16888879860690045 5.012378347320974 >100 0.12055475724169014 9.877666936401233 >500 0.009330670768940447 2.6991419851329987 >1k 0.005177017322100048 4.288354040135551 >5k 4.213851308686085E-4 1.3896406174002198 >10k+ 3.009893791918632E-4 3.9843494645349677 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 50704 1.2864940955340611 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 42533 1.0791742932579327 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 34925 0.8861392846033267 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 18233 0.46261925772863155 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10067 0.255426318628538 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9487 0.2407101902084971 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9461 0.24005050169311595 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 9409 0.23873112466235366 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8420 0.21363758844266315 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 7312 0.1855247086333436 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5451 0.13830623451317778 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5030 0.1276243550910446 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4724 0.11986032871771268 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4717 0.1196827202712639 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4527 0.11486191958194017 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4514 0.1145320753242496 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4476 0.11356791518638484 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4139 0.10501733712163693 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4086 0.10367258745566767 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 2.537263520696712E-5 0.0 0.0 0.0 0.0 6 5.074527041393424E-5 0.0 0.0 0.0 0.0 7 5.074527041393424E-5 0.0 0.0 2.537263520696712E-5 0.0 8 5.074527041393424E-5 0.0 0.0 2.537263520696712E-5 0.0 9 7.611790562090137E-5 0.0 0.0 1.2686317603483562E-4 0.0 10 1.0149054082786848E-4 0.0 0.0 2.0298108165573697E-4 0.0 11 1.2686317603483562E-4 0.0 0.0 4.313347985184411E-4 0.0 12 1.2686317603483562E-4 0.0 0.0 8.37296961829915E-4 0.0 13 1.2686317603483562E-4 0.0 0.0 9.387875026577835E-4 0.0 14 1.5223581124180273E-4 0.0 0.0 0.0011163959491065534 0.0 15 1.5223581124180273E-4 0.0 0.0 0.001446240206797126 0.0 16 1.5223581124180273E-4 0.0 0.0 0.0021820466277991724 0.0 17 1.5223581124180273E-4 0.0 0.0 0.00317157940087089 0.0 18 1.5223581124180273E-4 0.0 0.0 0.00405962163311474 0.0 19 1.5223581124180273E-4 0.0 0.0 0.005099899676600392 0.0 20 1.7760844644876985E-4 0.0 0.0 0.009032658133680295 0.0 21 1.7760844644876985E-4 0.0 0.0 0.015578798017077813 0.0 22 1.7760844644876985E-4 0.0 0.0 0.024002512905790897 0.0 23 1.7760844644876985E-4 0.0 0.0 0.030624770694809317 0.0 24 1.7760844644876985E-4 0.0 0.0 0.04112904167049371 0.0 25 1.7760844644876985E-4 0.0 0.0 0.0482333795284445 0.0 26 1.7760844644876985E-4 0.0 0.0 0.0593465937490961 0.0 27 1.7760844644876985E-4 0.0 0.0 0.1183125979700877 0.0 28 1.7760844644876985E-4 0.0 0.0 0.25184877706435566 0.0 29 1.7760844644876985E-4 0.0 0.0 0.41829326402205996 0.0 30 1.7760844644876985E-4 0.0 0.0 0.6440082268232395 0.0 31 2.0298108165573697E-4 0.0 0.0 0.9653780243546851 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 14450 0.0 21.201385 1 TAATACT 925 0.0 17.8 4 TCTAATA 940 0.0 16.925531 2 CTAATAC 955 0.0 16.853405 3 ACCGTTA 740 0.0 16.5 8 GTATTGG 2055 0.0 16.294405 1 TGTTACG 425 0.0 15.6705885 16 ATAACGC 190 2.7284841E-11 15.578948 3 CCGTTAT 805 0.0 15.397516 9 CTCTAAT 920 0.0 15.282607 1 AATACTG 1115 0.0 15.264574 5 ATTGGAC 2275 0.0 15.043956 3 TATACCG 210 9.094947E-12 14.97619 5 CCGTTTA 805 0.0 14.937888 27 GACCGTT 830 0.0 14.933735 7 TTGGACC 2815 0.0 14.589698 4 TACTGGT 1085 0.0 14.493088 7 TTCGCTA 570 0.0 14.280703 26 GTATTAG 740 0.0 14.25 1 ATACTGG 1005 0.0 14.17413 6 >>END_MODULE