##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088616_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2039262 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.704472009972235 31.0 31.0 34.0 30.0 34.0 2 31.877327189934398 31.0 31.0 34.0 30.0 34.0 3 31.949992203061697 31.0 31.0 34.0 30.0 34.0 4 35.637778274689566 37.0 35.0 37.0 33.0 37.0 5 35.549095702268765 37.0 35.0 37.0 33.0 37.0 6 35.585488769956974 37.0 35.0 37.0 33.0 37.0 7 35.45116272455427 37.0 35.0 37.0 33.0 37.0 8 35.48018842110528 37.0 35.0 37.0 33.0 37.0 9 37.08546179941567 39.0 37.0 39.0 33.0 39.0 10 36.95279419711641 39.0 37.0 39.0 33.0 39.0 11 36.99667673893791 39.0 37.0 39.0 33.0 39.0 12 36.89152448287665 39.0 37.0 39.0 33.0 39.0 13 36.93883375456415 39.0 37.0 39.0 33.0 39.0 14 37.961122700270984 40.0 37.0 41.0 33.0 41.0 15 37.924914503384066 40.0 37.0 41.0 33.0 41.0 16 37.8130554092608 40.0 37.0 41.0 32.0 41.0 17 37.847709122221666 40.0 37.0 41.0 32.0 41.0 18 37.825327495927446 40.0 37.0 41.0 32.0 41.0 19 37.84566083220302 40.0 37.0 41.0 32.0 41.0 20 37.735275800755375 40.0 37.0 41.0 32.0 41.0 21 37.63615857109092 39.0 37.0 41.0 32.0 41.0 22 37.484224685204744 39.0 36.0 41.0 32.0 41.0 23 37.34608255339432 39.0 36.0 41.0 31.0 41.0 24 37.20239086493055 39.0 36.0 41.0 31.0 41.0 25 37.00029030109912 39.0 36.0 41.0 31.0 41.0 26 37.157891923646886 39.0 36.0 41.0 31.0 41.0 27 37.08813433487212 39.0 36.0 41.0 31.0 41.0 28 36.95793625340932 39.0 36.0 41.0 31.0 41.0 29 36.807789778851365 39.0 35.0 41.0 30.0 41.0 30 36.67640597431816 39.0 35.0 40.0 30.0 41.0 31 36.472834780425465 39.0 35.0 40.0 30.0 41.0 32 36.35628232174189 38.0 35.0 40.0 30.0 41.0 33 36.14844291709452 38.0 35.0 40.0 30.0 41.0 34 35.99757461277658 38.0 35.0 40.0 29.0 41.0 35 35.797163385577726 38.0 35.0 40.0 28.0 41.0 36 35.64743029586194 38.0 35.0 40.0 27.0 41.0 37 35.4745564817076 38.0 34.0 40.0 26.0 41.0 38 35.36884274801374 38.0 34.0 40.0 26.0 41.0 39 35.23137586048286 38.0 34.0 40.0 25.0 41.0 40 35.03376074285698 38.0 34.0 40.0 24.0 41.0 41 34.88721949411111 38.0 34.0 40.0 24.0 41.0 42 34.64587532156241 38.0 33.0 40.0 23.0 41.0 43 34.286619865421905 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 6.0 14 6.0 15 9.0 16 39.0 17 61.0 18 139.0 19 325.0 20 735.0 21 1489.0 22 2714.0 23 4705.0 24 7625.0 25 11743.0 26 17070.0 27 24149.0 28 32389.0 29 42500.0 30 53750.0 31 65948.0 32 81563.0 33 100624.0 34 125197.0 35 154857.0 36 200329.0 37 284144.0 38 386118.0 39 441024.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18790915537091 20.915066332820402 13.588200044918212 23.308824466890474 2 19.13991434156082 22.71189283181857 35.04630596755101 23.101886859069605 3 20.077263245232835 24.50612035138202 32.30703068070704 23.109585722678105 4 13.920869412561995 16.07610988681199 35.884746540660295 34.11827415996571 5 13.172657559450428 37.91852150434814 34.78675128551407 14.122069650687358 6 32.75096579056541 36.311518578779975 13.617328229526171 17.320187401128447 7 26.1015014255157 32.6408279073508 21.610808223759378 19.646862443374122 8 26.933174844625164 34.254450874875324 18.993488820955818 19.818885459543697 9 24.341158713299222 14.398297030984738 21.889879770230603 39.370664485485435 10 16.89925080739993 26.782973448237644 33.39492424220135 22.922851502161077 11 33.08888215442645 22.098925984007938 23.47604182297321 21.336150038592393 12 21.074830012033765 26.683084370718426 31.00837459826153 21.23371101898628 13 31.62178278220258 20.55155247339479 26.365420431509044 21.461244312893584 14 20.62456908430599 22.75445724973054 27.401481516352483 29.219492149610986 15 23.17818897228507 28.84200264605529 25.45371806074943 22.52609032091021 16 22.175718470701653 27.759895491604315 26.74134073993435 23.323045297759677 17 21.934405682055566 26.196879067035034 26.94597359240745 24.92274165850195 18 23.19952021858888 24.944465203588358 29.32296095352142 22.533053624301342 19 23.05535041598382 24.379358807254782 30.30228582693151 22.26300494982989 20 24.102788165522625 23.943563897135338 30.233192203846293 21.720455733495744 21 23.04186514533199 24.802354969591942 30.58459383835917 21.5711860467169 22 21.67749901680118 25.19838059062543 30.233780652020194 22.890339740553202 23 22.47533666591149 25.502265035096027 31.312945565601673 20.709452733390805 24 22.658687309428608 25.40894696218534 28.84842653862034 23.083939189765708 25 22.526923955823232 25.64839633161408 29.757677041988718 22.067002670573963 26 22.359412375653545 26.171379646166116 29.79568098655298 21.673526991627362 27 21.41367808550348 26.354387028248453 29.456538688996314 22.77539619725175 28 21.759489462364325 25.94624918230222 29.663966670295434 22.63029468503802 29 22.09235497939941 25.96782561534516 29.035405945876498 22.904413459378933 30 21.913466734534357 26.08914401386384 30.66246514670503 21.33492410489677 31 22.51907798017126 25.553999437051246 30.67320432587868 21.253718256898818 32 22.223726034222185 25.531589369095293 29.420545275692874 22.82413932098965 33 21.83667424784064 25.63643121874482 30.097309713023634 22.429584820390904 34 21.23827149233399 26.229930239468985 30.465138859057834 22.066659409139188 35 20.897069626168683 28.168965047159215 29.45398874690942 21.47997657976268 36 22.76348012173031 25.81732999487069 29.50077037673433 21.918419506664666 37 21.95201008992469 26.38498633329116 29.294077955652586 22.368925621131567 38 21.806565316276185 24.969523288326855 30.686787671226156 22.5371237241708 39 21.2765696609852 24.92872421493658 31.316868553427664 22.477837570650557 40 20.349126301573804 25.68213402691758 30.87979867226477 23.088940999243846 41 21.77268050892921 24.489006316991148 30.909123006264032 22.82919016781561 42 20.274050122053957 26.500959660896932 30.38427627249466 22.84071394455445 43 20.698468367478036 26.37120683855238 29.482822707430433 23.44750208653915 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 91.0 1 230.5 2 370.0 3 1028.0 4 1686.0 5 1686.0 6 2668.5 7 3651.0 8 3994.5 9 4338.0 10 6463.5 11 8589.0 12 8589.0 13 15770.5 14 22952.0 15 35058.0 16 47164.0 17 43484.5 18 39805.0 19 39805.0 20 43669.0 21 47533.0 22 37446.5 23 27360.0 24 30752.0 25 34144.0 26 34144.0 27 36816.0 28 39488.0 29 43155.5 30 46823.0 31 50911.5 32 55000.0 33 55000.0 34 60474.0 35 65948.0 36 74056.5 37 82165.0 38 87402.0 39 92639.0 40 92639.0 41 96670.0 42 100701.0 43 108540.0 44 116379.0 45 125020.5 46 133662.0 47 133662.0 48 173919.0 49 214176.0 50 204752.5 51 195329.0 52 182375.0 53 169421.0 54 169421.0 55 150546.0 56 131671.0 57 112935.5 58 94200.0 59 83501.5 60 72803.0 61 72803.0 62 64867.5 63 56932.0 64 49797.0 65 42662.0 66 36750.0 67 30838.0 68 30838.0 69 26591.5 70 22345.0 71 18969.5 72 15594.0 73 12719.0 74 9844.0 75 9844.0 76 7829.0 77 5814.0 78 4513.5 79 3213.0 80 2523.0 81 1833.0 82 1833.0 83 1403.5 84 974.0 85 757.0 86 540.0 87 416.0 88 292.0 89 292.0 90 238.5 91 185.0 92 123.5 93 62.0 94 44.5 95 27.0 96 27.0 97 20.0 98 13.0 99 9.5 100 6.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2039262.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.58308511244972 #Duplication Level Percentage of deduplicated Percentage of total 1 80.02261528532667 38.87745529327845 2 11.080235765898228 10.766240745612864 3 3.5170200482120904 5.1260305303344 4 1.5449200707299526 3.002279331528205 5 0.8453543510040037 2.0534961192503602 6 0.5282510516909742 1.5398439483026203 7 0.3822651410680154 1.3000133918820993 8 0.2816680134156888 1.094744085538323 9 0.21366241967611868 0.9342341568411143 >10 1.3485202488440529 12.581849512878666 >50 0.13321750479642216 4.477988701747832 >100 0.09125596944906968 8.194723906755927 >500 0.0062649179184295105 2.0967590462600842 >1k 0.004041882528019039 3.6756979895033495 >5k 4.041882528019039E-4 1.2378001590316725 >10k+ 3.0314118960142797E-4 3.04084308125406 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 22608 1.108636359624217 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 22554 1.105988342841675 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 16780 0.8228466965009892 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9002 0.441434205119303 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5628 0.2759821935582578 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5366 0.26313440842814706 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5218 0.2558768809500692 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 4777 0.2342514105593102 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 4769 0.2338591117767114 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 3919 0.19217736612558856 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 2930 0.14367942912681156 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 2925 0.14343424238768732 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2679 0.1313710548227741 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2602 0.12759517904026063 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2580 0.12651635738811393 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2419 0.11862134438831304 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2335 0.11450220717102559 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2326 0.11406087104060193 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2282 0.11190322773630852 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2255 0.11057921934503757 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2187 0.10724467969294774 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 4.903734782485036E-5 0.0 0.0 0.0 0.0 7 4.903734782485036E-5 0.0 0.0 1.9614939129940145E-4 0.0 8 4.903734782485036E-5 0.0 0.0 1.9614939129940145E-4 0.0 9 9.807469564970072E-5 0.0 0.0 4.413361304236533E-4 0.0 10 9.807469564970072E-5 0.0 0.0 4.903734782485036E-4 0.0 11 1.4711204347455108E-4 0.0 0.0 8.336349130224561E-4 0.0 12 1.4711204347455108E-4 0.0 0.0 0.0011768963477964086 0.0 13 1.9614939129940145E-4 0.0 0.0 0.0013730457390958102 0.0 14 1.9614939129940145E-4 0.0 0.0 0.001618232478220062 0.0 15 1.9614939129940145E-4 0.0 0.0 0.0021086059564685657 0.0 16 1.9614939129940145E-4 0.0 0.0 0.0027460914781916204 0.0 17 1.9614939129940145E-4 0.0 0.0 0.0037758757825134778 0.0 18 1.9614939129940145E-4 0.0 0.0 0.004462398652061383 0.0 19 1.9614939129940145E-4 0.0 0.0 0.005688332347682642 0.0 20 1.9614939129940145E-4 0.0 0.0 0.009268058738896719 0.0 21 2.451867391242518E-4 0.0 0.0 0.014515054956155708 0.0 22 2.451867391242518E-4 0.0 0.0 0.02285140408638027 0.0 23 2.451867391242518E-4 0.0 0.0 0.02858877378188776 0.0 24 2.451867391242518E-4 0.0 0.0 0.03903372886858089 0.0 25 2.9422408694910215E-4 0.0 0.0 0.045310509390161735 0.0 26 3.4326143477395255E-4 0.0 0.0 0.057128510215950674 0.0 27 3.4326143477395255E-4 0.0 0.0 0.1085686880842187 0.0 28 3.4326143477395255E-4 0.0 0.0 0.22591506142908563 0.0 29 3.4326143477395255E-4 0.0 0.0 0.37028101342544506 0.0 30 3.4326143477395255E-4 0.0 0.0 0.5694707202899872 0.0 31 3.4326143477395255E-4 0.0 0.0 0.8367733032832466 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 7360 0.0 23.074728 1 TATACCG 105 4.801768E-7 17.61905 5 GTATTAG 390 0.0 17.076923 1 TCTATAC 145 2.9831426E-9 16.586206 3 CTAATAC 370 0.0 16.5 3 GTATTGG 1400 0.0 16.121428 1 GTTCTAA 190 2.7284841E-11 15.578948 1 TCTAATA 440 0.0 15.556818 2 TTAACGG 240 0.0 15.416667 35 GTATCAA 11085 0.0 15.3207035 2 GTCGGGT 230 0.0 15.282609 24 ATTGGAC 1445 0.0 15.107267 3 TTGGACC 1810 0.0 14.820442 4 CGGTATA 100 1.0940232E-4 14.8 26 GAGTAGT 175 2.240995E-9 14.799999 1 ACCGTTA 350 0.0 14.799999 8 TGGACCC 1800 0.0 14.491667 5 TATTGGA 1545 0.0 14.488672 2 TAATACT 410 0.0 14.439025 4 CTCTAAT 385 0.0 14.415584 1 >>END_MODULE