SRR2088615_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2088615_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3424647
Sequences flagged as poor quality	0
Sequence length	43
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	31158	0.9098163985952421	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	28974	0.8460434024295058	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	22426	0.6548412142915752	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12225	0.35697109804309757	No Hit
GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG	6876	0.20077981759871896	No Hit
ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA	6587	0.19234099164089027	No Hit
ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA	6562	0.19161098939540339	No Hit
TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG	6152	0.17963895256941811	No Hit
GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA	5834	0.17035332400682465	No Hit
GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG	5007	0.14620484972611777	No Hit
GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA	3683	0.10754393080513115	No Hit
CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA	3569	0.10421512056571086	No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3444	0.10056510933827634	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	9885	22.009106	1
GTATTGG	1695	16.808258	1
ACCGTTA	480	16.1875	8
GGACCGT	695	15.172662	6
GTATCAA	14785	14.752453	2
TAATACT	910	14.637363	4
ATTGGAC	2125	14.538823	3
TGTTACG	355	14.070422	16
GTATTAG	925	14.0	1
TTAACGG	545	13.917431	35
TTGGACC	2515	13.829026	4
TGGACCC	2365	13.6892185	5
TATACTG	460	13.673912	5
GACCGTT	560	13.544642	7
ATTAGAG	840	13.434525	3
GGACCCT	2570	13.389105	6
CTAATAC	885	13.169491	3
TACCCTC	875	12.897143	5
CGTTATT	405	12.790123	10
CCGTTTA	595	12.747899	27