##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088615_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3424647 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71049103747043 31.0 31.0 34.0 30.0 34.0 2 31.892589805606242 31.0 31.0 34.0 30.0 34.0 3 31.971985141826295 31.0 31.0 34.0 30.0 34.0 4 35.66036762329081 37.0 35.0 37.0 33.0 37.0 5 35.558937023290284 37.0 35.0 37.0 33.0 37.0 6 35.587186358185235 37.0 35.0 37.0 33.0 37.0 7 35.46286376376894 37.0 35.0 37.0 33.0 37.0 8 35.475999424174226 37.0 35.0 37.0 33.0 37.0 9 37.091818806434645 39.0 37.0 39.0 33.0 39.0 10 36.952112144696954 39.0 37.0 39.0 33.0 39.0 11 36.9982690186755 39.0 37.0 39.0 33.0 39.0 12 36.900110872741045 39.0 37.0 39.0 33.0 39.0 13 36.945331299839076 39.0 37.0 39.0 33.0 39.0 14 38.002471203601424 40.0 37.0 41.0 33.0 41.0 15 37.960291381856294 40.0 37.0 41.0 33.0 41.0 16 37.86334533165024 40.0 37.0 41.0 32.0 41.0 17 37.873381694522095 40.0 37.0 41.0 33.0 41.0 18 37.85493891779211 40.0 37.0 41.0 33.0 41.0 19 37.874644014404986 40.0 37.0 41.0 32.0 41.0 20 37.75456156503137 40.0 37.0 41.0 32.0 41.0 21 37.65485815034367 40.0 37.0 41.0 32.0 41.0 22 37.50817412714361 39.0 36.0 41.0 32.0 41.0 23 37.3917960011645 39.0 36.0 41.0 32.0 41.0 24 37.2589653765775 39.0 36.0 41.0 31.0 41.0 25 37.066354576106676 39.0 36.0 41.0 31.0 41.0 26 37.22914011283499 39.0 36.0 41.0 31.0 41.0 27 37.16214342675318 39.0 36.0 41.0 31.0 41.0 28 37.048154160122195 39.0 36.0 41.0 31.0 41.0 29 36.913380561558604 39.0 36.0 41.0 30.0 41.0 30 36.804687023217284 39.0 35.0 41.0 30.0 41.0 31 36.64665993312595 39.0 35.0 40.0 30.0 41.0 32 36.53976950033098 39.0 35.0 40.0 30.0 41.0 33 36.35674946936137 39.0 35.0 40.0 30.0 41.0 34 36.23132982757055 38.0 35.0 40.0 30.0 41.0 35 36.062064498910395 38.0 35.0 40.0 29.0 41.0 36 35.92853278016683 38.0 35.0 40.0 28.0 41.0 37 35.779456393607866 38.0 35.0 40.0 27.0 41.0 38 35.718514930151926 38.0 35.0 40.0 27.0 41.0 39 35.60021952627526 38.0 35.0 40.0 26.0 41.0 40 35.43631241409699 38.0 34.0 40.0 26.0 41.0 41 35.32520432032849 38.0 34.0 40.0 25.0 41.0 42 35.13008902815385 38.0 34.0 40.0 24.0 41.0 43 34.78730450174865 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 3.0 13 3.0 14 5.0 15 21.0 16 33.0 17 98.0 18 208.0 19 511.0 20 1032.0 21 2076.0 22 4003.0 23 7167.0 24 11733.0 25 17824.0 26 26437.0 27 37419.0 28 51332.0 29 67748.0 30 85980.0 31 107580.0 32 132733.0 33 164553.0 34 204263.0 35 254200.0 36 330801.0 37 464854.0 38 659622.0 39 792404.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.71037190110397 20.960496074485928 13.475491050610472 23.853640973799635 2 18.910883369877247 22.544133745755403 35.255692046508734 23.289290837858616 3 19.66666929467475 24.59450565269939 31.912515362897253 23.826309689728607 4 13.958927737661723 16.12574960280578 36.24653869435303 33.66878396517948 5 13.188191366876644 37.918623437685696 35.076637095735705 13.816548099701956 6 32.81395133571431 36.91752755831477 14.041593191940658 16.226927914030263 7 26.51444075841977 32.242651578396256 21.979725209634747 19.263182453549227 8 26.439571728122637 34.847387190563 19.29375494759022 19.41928613372415 9 24.6729370939545 14.464322892257217 21.532029432522535 39.33071058126575 10 16.553092917313812 27.052773614331638 33.93278197723736 22.46135149111719 11 33.517936301172064 22.23814600453711 23.249461915344853 20.994455778945976 12 20.87540701275197 26.73992385200577 30.949145999573098 21.435523135669165 13 30.83173243840898 20.833300483232286 26.150782839808016 22.184184238550717 14 20.741845801917684 22.45288346506954 27.32269924462288 29.482571488389897 15 23.268617174266428 29.02141446987091 25.12019486971942 22.589773486143244 16 22.512772849289284 27.86208330376824 26.30671131944402 23.31843252749845 17 22.0514698303212 26.533216416173694 27.006987873494698 24.408325880010405 18 22.89205281595446 25.711204687665617 28.937697812358472 22.45904468402145 19 23.10287746445108 24.96961000652038 29.73106425275364 22.196448276274896 20 23.842982941015524 24.750346532065933 29.52552482051435 21.881145706404194 21 22.89053441128385 25.486772797313122 29.822139332900587 21.80055345850244 22 21.964745563557354 25.82657424254237 29.464467432701824 22.744212761198455 23 22.549418962012727 25.995642762597136 30.298392797856245 21.15654547753389 24 22.748709575030652 26.125086760766873 28.151368593609792 22.97483507059268 25 22.771485645089847 25.94722901367645 29.07160942427059 22.20967591696312 26 22.44222543228543 26.596230210004123 29.109131539688615 21.852412818021826 27 21.738941268983343 26.615327068746065 28.77654251664478 22.86918914562581 28 21.952393925563715 26.286417257019483 29.168349321842513 22.59283949557429 29 22.35529676489285 26.36759350671763 28.588435538027714 22.68867419036181 30 22.219808348130478 26.339649020760387 29.877006301671383 21.56353632943775 31 22.52541648818112 26.040815301547866 29.810722097781174 21.623046112489842 32 22.16105776741369 25.807418983620796 29.05043935915147 22.981083889814045 33 21.947517510563863 25.93776818457493 29.61610349913436 22.498610805726837 34 21.61592129057389 26.228893080075117 29.986477438404602 22.168708190946397 35 21.35227367959384 27.662354689403024 29.038029320978193 21.947342310024943 36 22.857801110596217 25.883368417241254 29.059491386995507 22.199339085167026 37 21.951517922869133 26.170726501154718 29.13403921630463 22.743716359671524 38 21.920040226043735 25.084220359061828 30.266272699054824 22.72946671583962 39 21.319598779085844 25.172842631663933 30.807671564397733 22.69988702485249 40 20.640579890423744 25.718095908863013 30.5529007807228 23.088423419990438 41 21.63931056251929 24.677229507157964 30.628529013355244 23.0549309169675 42 20.392846328395304 26.38055834659748 30.247818242288915 22.978777082718306 43 20.850674536674873 26.00484079089027 29.6064090693143 23.538075603120557 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 185.0 1 378.5 2 572.0 3 1556.5 4 2541.0 5 2541.0 6 3932.0 7 5323.0 8 5755.0 9 6187.0 10 9079.5 11 11972.0 12 11972.0 13 22025.5 14 32079.0 15 48603.0 16 65127.0 17 60661.5 18 56196.0 19 56196.0 20 61274.0 21 66352.0 22 54715.5 23 43079.0 24 49019.5 25 54960.0 26 54960.0 27 61270.0 28 67580.0 29 74856.0 30 82132.0 31 92126.5 32 102121.0 33 102121.0 34 115491.5 35 128862.0 36 141801.5 37 154741.0 38 166225.0 39 177709.0 40 177709.0 41 185016.5 42 192324.0 43 205245.0 44 218166.0 45 225985.0 46 233804.0 47 233804.0 48 282494.0 49 331184.0 50 317695.5 51 304207.0 52 284970.0 53 265733.0 54 265733.0 55 241671.5 56 217610.0 57 187927.5 58 158245.0 59 141926.5 60 125608.0 61 125608.0 62 111311.0 63 97014.0 64 84721.0 65 72428.0 66 62014.0 67 51600.0 68 51600.0 69 44309.0 70 37018.0 71 31316.5 72 25615.0 73 20813.5 74 16012.0 75 16012.0 76 12631.5 77 9251.0 78 7256.5 79 5262.0 80 4022.0 81 2782.0 82 2782.0 83 2106.0 84 1430.0 85 1091.0 86 752.0 87 583.5 88 415.0 89 415.0 90 356.5 91 298.0 92 199.0 93 100.0 94 70.5 95 41.0 96 41.0 97 32.0 98 23.0 99 15.0 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3424647.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.30959348116737 #Duplication Level Percentage of deduplicated Percentage of total 1 78.26202429717026 37.02544554512368 2 12.017284497993938 11.370656886952553 3 3.990261528295838 5.663329523616531 4 1.7433604964784495 3.299107055180862 5 0.9466600314382451 2.2393050626106246 6 0.55897220255157 1.5866848601992514 7 0.40187139041304654 1.330866047850691 8 0.27201864061136927 1.0295273045298916 9 0.215321257205274 0.9168085031611855 >10 1.3448644966699974 12.135176786128708 >50 0.13978616276298872 4.607238106222409 >100 0.09366551932108756 8.573765379601586 >500 0.009087526338057253 2.9574895218406847 >1k 0.004203753679542457 3.4098489529628546 >5k 3.709194423125697E-4 1.0826560699618226 >10k+ 2.472796282083798E-4 2.772094394056714 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 31158 0.9098163985952421 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28974 0.8460434024295058 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22426 0.6548412142915752 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12225 0.35697109804309757 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 6876 0.20077981759871896 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 6587 0.19234099164089027 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 6562 0.19161098939540339 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 6152 0.17963895256941811 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5834 0.17035332400682465 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 5007 0.14620484972611777 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3683 0.10754393080513115 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3569 0.10421512056571086 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3444 0.10056510933827634 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.9200089819476284E-5 0.0 2 0.0 0.0 0.0 2.9200089819476284E-5 0.0 3 0.0 0.0 0.0 2.9200089819476284E-5 0.0 4 0.0 0.0 0.0 2.9200089819476284E-5 0.0 5 0.0 5.840017963895257E-5 0.0 2.9200089819476284E-5 0.0 6 2.9200089819476284E-5 5.840017963895257E-5 0.0 2.9200089819476284E-5 0.0 7 5.840017963895257E-5 8.760026945842885E-5 0.0 2.9200089819476284E-5 0.0 8 1.4600044909738143E-4 8.760026945842885E-5 0.0 5.840017963895257E-5 0.0 9 1.4600044909738143E-4 8.760026945842885E-5 0.0 2.04400628736334E-4 0.0 10 1.752005389168577E-4 8.760026945842885E-5 0.0 2.3360071855581027E-4 0.0 11 2.04400628736334E-4 1.1680035927790514E-4 0.0 4.3800134729214424E-4 0.0 12 2.3360071855581027E-4 1.1680035927790514E-4 0.0 9.052027844037648E-4 0.0 13 2.3360071855581027E-4 1.1680035927790514E-4 0.0 0.00102200314368167 0.0 14 2.6280080837528657E-4 1.1680035927790514E-4 0.0 0.0011096034131400988 0.0 15 2.6280080837528657E-4 1.4600044909738143E-4 0.0 0.0014892045807932905 0.0 16 2.6280080837528657E-4 1.4600044909738143E-4 0.0 0.00204400628736334 0.0 17 2.6280080837528657E-4 1.4600044909738143E-4 0.0 0.0026864082633918183 0.0 18 2.9200089819476287E-4 1.4600044909738143E-4 0.0 0.003182809790322915 0.0 19 2.9200089819476287E-4 1.4600044909738143E-4 0.0 0.003825211766351393 0.0 20 2.9200089819476287E-4 1.4600044909738143E-4 0.0 0.005956818323173162 0.0 21 2.9200089819476287E-4 1.4600044909738143E-4 0.0 0.010745633053567273 0.0 22 3.212009880142391E-4 1.752005389168577E-4 0.0 0.01877565775392325 0.0 23 3.212009880142391E-4 1.752005389168577E-4 0.0 0.023798073202873173 0.0 24 3.212009880142391E-4 1.752005389168577E-4 0.0 0.03247049987925763 0.0 25 3.212009880142391E-4 1.752005389168577E-4 0.0 0.038952919819181364 0.0 26 3.212009880142391E-4 1.752005389168577E-4 0.0 0.049464952154192825 0.0 27 3.212009880142391E-4 1.752005389168577E-4 0.0 0.09965990655387257 0.0 28 3.504010778337154E-4 1.752005389168577E-4 0.0 0.21406585846658063 0.0 29 3.504010778337154E-4 1.752005389168577E-4 0.0 0.3581975018155156 0.0 30 3.504010778337154E-4 2.04400628736334E-4 0.0 0.5562909111508427 0.0 31 3.504010778337154E-4 2.04400628736334E-4 0.0 0.8590374423991728 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9885 0.0 22.009106 1 GTATTGG 1695 0.0 16.808258 1 ACCGTTA 480 0.0 16.1875 8 GGACCGT 695 0.0 15.172662 6 GTATCAA 14785 0.0 14.752453 2 TAATACT 910 0.0 14.637363 4 ATTGGAC 2125 0.0 14.538823 3 TGTTACG 355 0.0 14.070422 16 GTATTAG 925 0.0 14.0 1 TTAACGG 545 0.0 13.917431 35 TTGGACC 2515 0.0 13.829026 4 TGGACCC 2365 0.0 13.6892185 5 TATACTG 460 0.0 13.673912 5 GACCGTT 560 0.0 13.544642 7 ATTAGAG 840 0.0 13.434525 3 GGACCCT 2570 0.0 13.389105 6 CTAATAC 885 0.0 13.169491 3 TACCCTC 875 0.0 12.897143 5 CGTTATT 405 0.0 12.790123 10 CCGTTTA 595 0.0 12.747899 27 >>END_MODULE