##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088609_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3141402 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.734094522127382 31.0 31.0 34.0 30.0 34.0 2 31.90904666133147 31.0 31.0 34.0 30.0 34.0 3 31.98383237802739 33.0 31.0 34.0 30.0 34.0 4 35.66688758713466 37.0 35.0 37.0 33.0 37.0 5 35.57119973820606 37.0 35.0 37.0 33.0 37.0 6 35.606680711351174 37.0 35.0 37.0 33.0 37.0 7 35.48277043180083 37.0 35.0 37.0 33.0 37.0 8 35.499688037379485 37.0 35.0 37.0 33.0 37.0 9 37.11951924650204 39.0 37.0 39.0 33.0 39.0 10 36.97871873768464 39.0 37.0 39.0 33.0 39.0 11 37.02658462686406 39.0 37.0 39.0 33.0 39.0 12 36.93194599099383 39.0 37.0 39.0 33.0 39.0 13 36.979010008906855 39.0 37.0 39.0 33.0 39.0 14 38.03421847951965 40.0 37.0 41.0 33.0 41.0 15 38.00156108641938 40.0 37.0 41.0 33.0 41.0 16 37.90140485044576 40.0 37.0 41.0 33.0 41.0 17 37.921859093487555 40.0 37.0 41.0 33.0 41.0 18 37.90462252204589 40.0 37.0 41.0 33.0 41.0 19 37.92668241759571 40.0 37.0 41.0 32.0 41.0 20 37.81034964643175 40.0 37.0 41.0 32.0 41.0 21 37.713886665889945 40.0 37.0 41.0 32.0 41.0 22 37.56772899488827 39.0 36.0 41.0 32.0 41.0 23 37.45663178415243 39.0 36.0 41.0 32.0 41.0 24 37.32318499829057 39.0 36.0 41.0 31.0 41.0 25 37.13022338433604 39.0 36.0 41.0 31.0 41.0 26 37.294612405543766 39.0 36.0 41.0 31.0 41.0 27 37.2194020376889 39.0 36.0 41.0 31.0 41.0 28 37.107859802725024 39.0 36.0 41.0 31.0 41.0 29 36.97039029070459 39.0 36.0 41.0 31.0 41.0 30 36.86306082443444 39.0 35.0 41.0 30.0 41.0 31 36.696182468846715 39.0 35.0 40.0 30.0 41.0 32 36.581569948704434 39.0 35.0 40.0 30.0 41.0 33 36.39948691698802 39.0 35.0 40.0 30.0 41.0 34 36.273941061984424 38.0 35.0 40.0 30.0 41.0 35 36.100733366821565 38.0 35.0 40.0 29.0 41.0 36 35.96718694391867 38.0 35.0 40.0 29.0 41.0 37 35.81281128617095 38.0 35.0 40.0 27.0 41.0 38 35.73582909796327 38.0 35.0 40.0 27.0 41.0 39 35.61035327538468 38.0 35.0 40.0 26.0 41.0 40 35.44245658467143 38.0 35.0 40.0 26.0 41.0 41 35.32242801144203 38.0 34.0 40.0 25.0 41.0 42 35.12138624728704 38.0 34.0 40.0 24.0 41.0 43 34.767443644589264 38.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 5.0 13 4.0 14 6.0 15 20.0 16 46.0 17 85.0 18 210.0 19 500.0 20 975.0 21 2000.0 22 3664.0 23 6405.0 24 10876.0 25 16282.0 26 23648.0 27 33602.0 28 45614.0 29 60964.0 30 77565.0 31 96580.0 32 120082.0 33 149111.0 34 185576.0 35 231112.0 36 302755.0 37 429386.0 38 603446.0 39 740882.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.38410174820032 21.420308511931935 13.81602863944188 23.37956110042586 2 18.817107775445486 22.923459016069895 35.57316128276483 22.68627192571979 3 19.591539064405 24.82159239727994 32.3560945081209 23.230774030194162 4 13.849166709641109 16.505783086660035 36.39995772588163 33.24509247781723 5 13.067254684373411 38.07720247201727 35.06173358264877 13.793809260960552 6 32.21103188958306 37.29309397523781 14.06276560593009 16.433108529249044 7 25.972607135285454 32.79281034391651 22.027362305110902 19.207220215687133 8 26.08106189529388 35.23207154003213 19.405443811393766 19.28142275328022 9 24.44863790116642 14.671315546370698 21.978435106363335 38.901611446099544 10 16.545319573871794 27.39792614889785 33.908267709767806 22.14848656746255 11 33.01602278218452 22.68245197526455 23.37956110042586 20.921964142125077 12 20.637855327016407 27.262699902782263 31.044737349756574 21.054707420444757 13 30.649085981354823 21.190602157890012 26.348235596717647 21.812076264037522 14 20.42973169304661 23.07743485233663 27.846165501900106 28.646667952716655 15 23.094147135578318 29.336232675728862 25.43252980675507 22.137090381937746 16 21.923746149012445 28.312263123280623 26.781863639228597 22.98212708847833 17 21.58061909937028 27.11101603678867 27.37074083482471 23.937624029016344 18 22.52389219845152 25.907636144625872 29.47706151584547 22.091410141077137 19 22.770915661223874 25.319745769564033 30.288196162095776 21.621142407116313 20 23.409547711499513 25.096374166693725 30.16506642575513 21.329011696051637 21 22.52924012908886 25.86488453244761 30.370866256531322 21.23500908193221 22 21.499349653434997 26.261809217667782 30.04639329827892 22.192447830618303 23 22.10936390821678 26.375993903359074 30.864053693223596 20.65058849520055 24 22.229214853750012 26.414639068797946 28.888184320249366 22.467961757202676 25 22.214189715292726 26.384747956485672 29.724180477379207 21.676881850842395 26 21.81605537909507 27.02468515650019 29.75744587926028 21.401813585144467 27 21.273686080291537 27.027868448546222 29.38818400192016 22.310261469242075 28 21.462614463223744 26.733509433049317 29.75496291146437 22.04891319226256 29 21.761843915551083 26.694195776280782 29.319902387532697 22.22405792063544 30 21.651001686508124 26.82324643582706 30.50542401131724 21.020327866347575 31 22.009313039209882 26.54709585083348 30.328942300285032 21.114648809671603 32 21.56877725295903 26.401969566454724 29.668982193300952 22.360270987285293 33 21.318284001856497 26.355334337980302 30.288800987584523 22.037580672578677 34 20.99871331335499 26.529619577500746 30.639918100262243 21.83174900888202 35 20.75633745696985 28.046490070357123 29.681524363962332 21.515648108710696 36 22.26483589174515 26.33712590747698 29.609359133278705 21.78867906749916 37 21.397102312916335 26.57714612774806 29.698172981363097 22.32757857797251 38 21.30169905029665 25.558524505937157 30.89283065331976 22.246945790446432 39 20.824778235959613 25.582431029202883 31.383630620977517 22.20916011385999 40 20.155268252837427 26.05989300318775 31.138198804228175 22.64663993974665 41 20.999413637605123 25.09086707145408 31.334448758866262 22.575270532074533 42 19.916330351862 26.747993411858783 30.759641714113634 22.576034522165582 43 20.215655302950722 26.456276528760085 30.19976430905691 23.12830385923228 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 211.0 1 438.0 2 665.0 3 1706.5 4 2748.0 5 2748.0 6 4037.0 7 5326.0 8 5832.0 9 6338.0 10 9486.5 11 12635.0 12 12635.0 13 22889.5 14 33144.0 15 49961.0 16 66778.0 17 62296.5 18 57815.0 19 57815.0 20 63947.0 21 70079.0 22 58113.5 23 46148.0 24 52307.5 25 58467.0 26 58467.0 27 64865.0 28 71263.0 29 77998.5 30 84734.0 31 93396.0 32 102058.0 33 102058.0 34 113201.5 35 124345.0 36 135812.0 37 147279.0 38 156911.5 39 166544.0 40 166544.0 41 171840.0 42 177136.0 43 187665.5 44 198195.0 45 204651.0 46 211107.0 47 211107.0 48 254108.0 49 297109.0 50 283271.5 51 269434.0 52 249542.0 53 229650.0 54 229650.0 55 207692.5 56 185735.0 57 161306.5 58 136878.0 59 122463.0 60 108048.0 61 108048.0 62 95193.5 63 82339.0 64 71926.0 65 61513.0 66 52177.5 67 42842.0 68 42842.0 69 36932.0 70 31022.0 71 26089.5 72 21157.0 73 17549.0 74 13941.0 75 13941.0 76 11063.0 77 8185.0 78 6478.0 79 4771.0 80 3699.5 81 2628.0 82 2628.0 83 2011.0 84 1394.0 85 1099.5 86 805.0 87 608.5 88 412.0 89 412.0 90 377.0 91 342.0 92 227.0 93 112.0 94 78.0 95 44.0 96 44.0 97 31.0 98 18.0 99 13.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3141402.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.90781183215011 #Duplication Level Percentage of deduplicated Percentage of total 1 78.24142992916488 38.266171324539535 2 12.307805173844374 12.038956390182886 3 3.9916491815511295 5.856684812137758 4 1.7282408829666547 3.380979196190484 5 0.9117192685612054 2.2295097215268487 6 0.5503183366347132 1.6148919393547438 7 0.3727327780778227 1.2760681201733302 8 0.2541234501704661 0.9942897506459145 9 0.19530592134753136 0.8596786725872796 >10 1.2223743056488081 11.328264710607977 >50 0.12394625050155154 4.170495292057129 >100 0.0879711812780984 8.231228233854559 >500 0.008146934376902084 2.6913777533268113 >1k 0.0036498266007366402 3.1169528765391536 >5k 3.258773750657715E-4 0.909068754459013 >10k+ 2.607019000526172E-4 3.0353824518166665 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 31270 0.9954154227952996 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 29421 0.9365563528641034 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 22066 0.7024252228781925 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12468 0.3968928522997057 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5956 0.18959687426187416 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5798 0.18456727282913807 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5723 0.18217980379461146 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5582 0.1776913620097014 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5460 0.1738077457135381 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4633 0.14748192049282455 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3543 0.11278403719103763 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3458 0.11007823895190745 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3216 0.10237467220050156 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3172 0.10097402370024594 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 3.183292046035496E-5 0.0 0.0 0.0 6 0.0 6.366584092070992E-5 0.0 0.0 0.0 7 0.0 6.366584092070992E-5 0.0 0.0 3.183292046035496E-5 8 0.0 6.366584092070992E-5 0.0 0.0 3.183292046035496E-5 9 3.183292046035496E-5 6.366584092070992E-5 0.0 1.9099752276212977E-4 3.183292046035496E-5 10 6.366584092070992E-5 6.366584092070992E-5 0.0 2.546633636828397E-4 3.183292046035496E-5 11 6.366584092070992E-5 6.366584092070992E-5 0.0 5.093267273656793E-4 3.183292046035496E-5 12 6.366584092070992E-5 6.366584092070992E-5 0.0 7.321571705881641E-4 6.366584092070992E-5 13 6.366584092070992E-5 6.366584092070992E-5 0.0 7.95823011508874E-4 6.366584092070992E-5 14 1.2733168184141984E-4 6.366584092070992E-5 0.0 0.0010186534547313587 6.366584092070992E-5 15 1.591646023017748E-4 9.549876138106488E-5 0.0 0.0014006485002556184 6.366584092070992E-5 16 2.2283044322248473E-4 9.549876138106488E-5 0.0 0.0019736410685420075 6.366584092070992E-5 17 2.546633636828397E-4 9.549876138106488E-5 0.0 0.002642132398209462 6.366584092070992E-5 18 2.546633636828397E-4 9.549876138106488E-5 0.0 0.0030877932846544312 6.366584092070992E-5 19 3.183292046035496E-4 9.549876138106488E-5 0.0 0.004010947978004725 6.366584092070992E-5 20 3.183292046035496E-4 9.549876138106488E-5 0.0 0.007194240024040221 6.366584092070992E-5 21 3.183292046035496E-4 9.549876138106488E-5 0.0 0.012510337740919501 6.366584092070992E-5 22 3.183292046035496E-4 9.549876138106488E-5 0.0 0.021137059185675697 6.366584092070992E-5 23 3.183292046035496E-4 9.549876138106488E-5 0.0 0.026325825220713556 6.366584092070992E-5 24 3.183292046035496E-4 9.549876138106488E-5 0.0 0.0365441926884875 6.366584092070992E-5 25 3.183292046035496E-4 9.549876138106488E-5 0.0 0.043579268110225944 6.366584092070992E-5 26 3.501621250639046E-4 9.549876138106488E-5 0.0 0.05468895735088983 6.366584092070992E-5 27 3.501621250639046E-4 9.549876138106488E-5 0.0 0.10979174266776427 6.366584092070992E-5 28 3.501621250639046E-4 1.2733168184141984E-4 0.0 0.23521344928156282 6.366584092070992E-5 29 3.8199504552425954E-4 1.2733168184141984E-4 0.0 0.3917677521055885 6.366584092070992E-5 30 4.1382796598461453E-4 1.2733168184141984E-4 0.0 0.615107522055439 6.366584092070992E-5 31 4.1382796598461453E-4 1.2733168184141984E-4 0.0 0.9509129999917234 6.366584092070992E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 9980 0.0 22.170341 1 TACGTTA 135 1.1550583E-9 17.814816 19 TAATACT 765 0.0 15.477124 4 TCTAGAC 210 9.094947E-12 14.97619 3 TATAACG 215 1.2732926E-11 14.627907 2 GTATCAA 15150 0.0 14.616832 2 TTAACGG 375 0.0 14.306666 35 GTATTGG 1350 0.0 14.251851 1 TGTCGGG 445 0.0 14.13483 23 ATACTGG 725 0.0 13.77931 6 TAGCGAA 445 0.0 13.7191 10 CTAATAC 770 0.0 13.694805 3 AGTTCCG 375 0.0 13.32 32 AATACTG 935 0.0 13.256684 5 CGAACTA 545 0.0 13.238532 24 TTGGACC 1970 0.0 13.147207 4 ATTGGAC 1550 0.0 13.009677 3 ACGTTAA 215 2.904926E-9 12.906977 20 TAACGGC 430 0.0 12.906977 36 TGTGCGC 275 3.6379788E-12 12.781817 10 >>END_MODULE