##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088608_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1367436 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.72679525769396 31.0 31.0 34.0 30.0 34.0 2 31.91718661787462 31.0 31.0 34.0 30.0 34.0 3 31.995327752084926 31.0 31.0 34.0 30.0 34.0 4 35.69040525479803 37.0 35.0 37.0 35.0 37.0 5 35.58581900725153 37.0 35.0 37.0 33.0 37.0 6 35.61191163608388 37.0 35.0 37.0 33.0 37.0 7 35.488172024138606 37.0 35.0 37.0 33.0 37.0 8 35.501209563006974 37.0 35.0 37.0 33.0 37.0 9 37.12969528372809 39.0 37.0 39.0 33.0 39.0 10 36.97467888807959 39.0 37.0 39.0 33.0 39.0 11 37.02480993626027 39.0 37.0 39.0 33.0 39.0 12 36.92199415548516 39.0 37.0 39.0 33.0 39.0 13 36.966807221690814 39.0 37.0 39.0 33.0 39.0 14 38.04474871218836 40.0 37.0 41.0 33.0 41.0 15 37.99445092859922 40.0 37.0 41.0 33.0 41.0 16 37.88975498670504 40.0 37.0 41.0 33.0 41.0 17 37.8911144653205 40.0 37.0 41.0 33.0 41.0 18 37.86194527568384 40.0 37.0 41.0 33.0 41.0 19 37.87576603219456 40.0 37.0 41.0 32.0 41.0 20 37.75009360584335 40.0 37.0 41.0 32.0 41.0 21 37.64572016533132 39.0 37.0 41.0 32.0 41.0 22 37.4955047256325 39.0 36.0 41.0 32.0 41.0 23 37.37621212254175 39.0 36.0 41.0 31.0 41.0 24 37.24876337905394 39.0 36.0 41.0 31.0 41.0 25 37.04872184146095 39.0 36.0 41.0 31.0 41.0 26 37.226928353502466 39.0 36.0 41.0 31.0 41.0 27 37.16621545724992 39.0 36.0 41.0 31.0 41.0 28 37.06060978356574 39.0 36.0 41.0 31.0 41.0 29 36.943274858933066 39.0 36.0 41.0 30.0 41.0 30 36.84338133557987 39.0 36.0 41.0 30.0 41.0 31 36.69741984268368 39.0 35.0 40.0 30.0 41.0 32 36.59126715985246 39.0 35.0 40.0 30.0 41.0 33 36.42582029433187 39.0 35.0 40.0 30.0 41.0 34 36.29695283728087 39.0 35.0 40.0 30.0 41.0 35 36.13501107181616 38.0 35.0 40.0 29.0 41.0 36 36.01219508627826 38.0 35.0 40.0 29.0 41.0 37 35.870925586279725 38.0 35.0 40.0 28.0 41.0 38 35.81746202381684 38.0 35.0 40.0 27.0 41.0 39 35.708910691249905 38.0 35.0 40.0 27.0 41.0 40 35.56101272746951 38.0 35.0 40.0 26.0 41.0 41 35.4658901769443 38.0 34.0 40.0 26.0 41.0 42 35.29000187211687 38.0 34.0 40.0 25.0 41.0 43 34.94727577744041 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 1.0 14 3.0 15 4.0 16 20.0 17 34.0 18 89.0 19 210.0 20 441.0 21 886.0 22 1563.0 23 2862.0 24 4386.0 25 6870.0 26 10148.0 27 14187.0 28 19684.0 29 25821.0 30 33359.0 31 42319.0 32 52694.0 33 65527.0 34 81136.0 35 101160.0 36 132099.0 37 185611.0 38 269707.0 39 316613.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.43462655656279 21.049540892590223 13.24902957067095 24.26680298017604 2 19.185468277857247 22.104581128476944 35.31448638181238 23.395464211853426 3 19.68348061627747 24.372402072199357 31.59489731146467 24.3492200000585 4 14.092944752076148 16.248877461175514 36.14962601540401 33.50855177134432 5 13.451671595599354 37.475976937860345 35.16588710550256 13.906464361037738 6 32.95510722256837 36.90234862911318 14.078465098183754 16.064079050134705 7 26.887912852959843 31.951257682260813 21.893967980951214 19.26686148382813 8 26.17819042353719 34.99527583009369 19.227152129971714 19.599381616397405 9 24.928333026189158 14.40630493858579 21.194703079339728 39.47065895588533 10 16.767000430001843 26.758766040970105 33.82798171175836 22.646251817269693 11 33.88341392211409 22.19314103182891 22.98762062721765 20.935824418839346 12 21.058608958664244 26.504202024811395 30.588268847682816 21.84892016884154 13 30.47009147046004 20.91820019364709 25.848668603137554 22.763039732755317 14 20.96727013183798 22.34093588292249 26.799937986128786 29.891855999110746 15 23.845430425994344 28.727121415554368 24.627624254444083 22.79982390400721 16 22.855182984797825 27.707037111791706 26.00487335421914 23.432906549191333 17 22.432274709748757 26.503836376985834 26.637370962882358 24.426517950383055 18 22.883996033452387 25.792797615391137 28.504734408045422 22.81847194311105 19 23.443144688307168 25.034078377342706 29.007353909067774 22.515423025282352 20 23.9830602675372 24.819223715040412 28.96040472826516 22.237311289157226 21 23.197502479092257 25.521121280995967 29.107907061098288 22.173469178813487 22 22.41662498281455 25.815175262315748 28.739699700753818 23.028500054115877 23 22.838363184821812 26.027251001143746 29.570744078699114 21.563641735335327 24 23.16459417479136 26.137091607943624 27.52055672075329 23.17775749651172 25 23.098704436624455 25.877408522227004 28.414126876870288 22.609760164278256 26 22.72801067106614 26.45096370140906 28.584006856628026 22.237018770896775 27 22.296692496029063 26.439701748381644 28.0340725269775 23.229533228611796 28 22.358048201158955 26.182505067878864 28.53032975583501 22.929116975127172 29 22.830611450919825 26.240643072143776 28.042116779139935 22.88662869779646 30 22.740515826700484 26.093433257571103 29.129919060197334 22.03613185553108 31 22.878950093459586 25.897299763937763 29.08084912200644 22.142901020596213 32 22.445218642773774 25.782486346710193 28.535375695827813 23.23691931468822 33 22.283967951699385 25.877627910922342 29.05371805334948 22.784686084028795 34 22.157234415358378 26.063084488049164 29.354353695529444 22.42532740106301 35 21.957736961729836 27.289394165430775 28.440453520311003 22.31241535252838 36 23.298786926773904 25.668623613829094 28.435700098578653 22.59688936081835 37 22.29069587168979 25.91229132478595 28.647263930450855 23.1497488730734 38 22.253692311742558 25.06815675468541 29.624786827317696 23.053364106254335 39 21.799484582825084 25.17799736148529 30.139618965713932 22.88289908997569 40 21.26337174098093 25.831336896205748 29.74676694192635 23.158524420886977 41 22.05024586159791 24.61716672663291 29.9987714233061 23.33381598846308 42 20.970268444007615 26.287665382511506 29.541126604828307 23.200939568652572 43 21.463307972000152 25.79374829973761 28.943146150898468 23.79979757736377 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 72.0 1 154.5 2 237.0 3 548.5 4 860.0 5 860.0 6 1301.5 7 1743.0 8 1921.0 9 2099.0 10 3046.5 11 3994.0 12 3994.0 13 7345.5 14 10697.0 15 15980.5 16 21264.0 17 20100.0 18 18936.0 19 18936.0 20 21506.5 21 24077.0 22 20150.0 23 16223.0 24 18495.5 25 20768.0 26 20768.0 27 23383.0 28 25998.0 29 29184.0 30 32370.0 31 36792.0 32 41214.0 33 41214.0 34 46737.0 35 52260.0 36 57884.0 37 63508.0 38 68583.5 39 73659.0 40 73659.0 41 76273.5 42 78888.0 43 84656.0 44 90424.0 45 91741.5 46 93059.0 47 93059.0 48 109700.0 49 126341.0 50 122131.0 51 117921.0 52 110776.5 53 103632.0 54 103632.0 55 95130.0 56 86628.0 57 76226.0 58 65824.0 59 59173.5 60 52523.0 61 52523.0 62 47133.0 63 41743.0 64 36448.0 65 31153.0 66 27032.0 67 22911.0 68 22911.0 69 19764.0 70 16617.0 71 14267.5 72 11918.0 73 9765.5 74 7613.0 75 7613.0 76 6126.5 77 4640.0 78 3631.5 79 2623.0 80 2036.0 81 1449.0 82 1449.0 83 1101.0 84 753.0 85 579.0 86 405.0 87 296.5 88 188.0 89 188.0 90 159.0 91 130.0 92 85.5 93 41.0 94 32.0 95 23.0 96 23.0 97 16.0 98 9.0 99 5.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1367436.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.24133127927078 #Duplication Level Percentage of deduplicated Percentage of total 1 83.23546968389168 45.98038154993561 2 9.61789595504278 10.626107533241532 3 2.7100105193013446 4.491137666011027 4 1.2240186419183223 2.7046567716085264 5 0.7086499479545251 1.9573383267996958 6 0.4381964507837137 1.4523933181886284 7 0.3250934845330237 1.257101781307488 8 0.24935905291391247 1.101994083960212 9 0.17987390808323933 0.8942826730430995 >10 1.1257774042378308 11.888720331299584 >50 0.1061753087300899 4.070058103721164 >100 0.07204917717853536 7.8059558626296015 >500 0.005042101542510806 1.8825858431763363 >1k 0.001990303240464792 1.87452306312847 >5k 2.653737653953056E-4 1.2555214494536469 >10k+ 1.326868826976528E-4 0.757241642495512 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 10331 0.7555015371834587 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 9793 0.7161578311526097 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 7336 0.5364784896697177 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3994 0.29207948306173015 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 2236 0.1635177075928965 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2173 0.15891054499077104 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 2159 0.15788673107918763 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2124 0.15532719630022904 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2043 0.14940370152606777 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1627 0.11898180243901726 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 7.312956511310218E-5 0.0 10 7.312956511310218E-5 0.0 0.0 1.4625913022620437E-4 0.0 11 1.4625913022620437E-4 0.0 0.0 2.1938869533930655E-4 0.0 12 1.4625913022620437E-4 0.0 0.0 4.387773906786131E-4 0.0 13 1.4625913022620437E-4 0.0 0.0 5.119069557917153E-4 0.0 14 1.4625913022620437E-4 0.0 0.0 8.775547813572262E-4 0.0 15 1.4625913022620437E-4 0.0 0.0 0.0013894617371489415 0.0 16 1.4625913022620437E-4 0.0 0.0 0.0016088504324882481 0.0 17 1.4625913022620437E-4 0.0 0.0 0.0021938869533930654 0.0 18 1.4625913022620437E-4 0.0 0.0 0.0026326643440716785 0.0 19 2.1938869533930655E-4 0.0 0.0 0.0032908304300895983 0.0 20 2.1938869533930655E-4 0.0 0.0 0.006142883469500583 0.0 21 2.9251826045240874E-4 0.0 0.0 0.010530657376286714 0.0 22 2.9251826045240874E-4 0.0 0.0 0.01703918867135281 0.0 23 2.9251826045240874E-4 0.0 0.0 0.021573221708365144 0.0 24 2.9251826045240874E-4 0.0 0.0 0.02808175300343124 0.0 25 2.9251826045240874E-4 0.0 0.0 0.03254265647533047 0.0 26 2.9251826045240874E-4 0.0 0.0 0.03992874255175379 0.0 27 2.9251826045240874E-4 0.0 0.0 0.08563472074744266 0.0 28 2.9251826045240874E-4 0.0 0.0 0.18136132148049341 0.0 29 2.9251826045240874E-4 0.0 0.0 0.30582784130299334 0.0 30 2.9251826045240874E-4 0.0 0.0 0.4762197280165214 0.0 31 2.9251826045240874E-4 0.0 0.0 0.7399249398143679 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3480 0.0 23.70977 1 TCACGTT 75 2.0676275E-4 17.266666 24 TCTAGAC 90 4.44695E-5 16.444445 3 ATAGGAC 80 3.3831532E-4 16.1875 3 ACGTTCG 130 2.5898044E-7 15.653846 22 GTGCTAG 130 2.5898044E-7 15.653846 1 CTAATAC 415 0.0 15.602409 3 CGGTTGG 215 0.0 15.488372 33 TTCGGTT 205 5.456968E-12 15.341463 31 ATTTCGG 205 5.456968E-12 15.341463 29 GCGTAAC 145 5.3471013E-8 15.310345 20 TCTATGC 85 5.365074E-4 15.235294 3 TGTTACG 195 4.1836756E-11 15.179487 16 GTATCAA 5440 0.0 15.167279 2 GGCGTAA 135 3.9734368E-7 15.074073 19 TTTCGGT 210 9.094947E-12 14.9761915 30 ATGCTAG 360 0.0 14.902778 15 ACGTTTA 75 0.004104935 14.8 26 ACGAATG 150 8.103598E-8 14.8 13 TGCGGTA 175 2.239176E-9 14.799999 36 >>END_MODULE