##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088605_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1645954 Sequences flagged as poor quality 0 Sequence length 43 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.83760177987963 31.0 31.0 34.0 30.0 34.0 2 32.02454807363997 31.0 31.0 34.0 30.0 34.0 3 32.10462989852693 33.0 31.0 34.0 30.0 34.0 4 35.76815937747956 37.0 35.0 37.0 35.0 37.0 5 35.68038110421069 37.0 35.0 37.0 33.0 37.0 6 35.71637542725981 37.0 35.0 37.0 33.0 37.0 7 35.597335040954974 37.0 35.0 37.0 33.0 37.0 8 35.60977949566027 37.0 35.0 37.0 33.0 37.0 9 37.252558090930854 39.0 37.0 39.0 34.0 39.0 10 37.114679389581966 39.0 37.0 39.0 33.0 39.0 11 37.15644604891753 39.0 37.0 39.0 33.0 39.0 12 37.062612320878955 39.0 37.0 39.0 33.0 39.0 13 37.099053801017526 39.0 37.0 39.0 33.0 39.0 14 38.19378245078538 40.0 37.0 41.0 33.0 41.0 15 38.14435032813797 40.0 37.0 41.0 33.0 41.0 16 38.05538672405183 40.0 37.0 41.0 33.0 41.0 17 38.064194989653416 40.0 37.0 41.0 33.0 41.0 18 38.02884406247076 40.0 37.0 41.0 33.0 41.0 19 38.0472224618671 40.0 37.0 41.0 33.0 41.0 20 37.92802836531276 40.0 37.0 41.0 33.0 41.0 21 37.825923446220244 40.0 37.0 41.0 32.0 41.0 22 37.68102267742598 40.0 37.0 41.0 32.0 41.0 23 37.55509206211109 39.0 36.0 41.0 32.0 41.0 24 37.42641774922021 39.0 36.0 41.0 32.0 41.0 25 37.22937700567574 39.0 36.0 41.0 31.0 41.0 26 37.40703203127183 39.0 36.0 41.0 32.0 41.0 27 37.34388081319405 39.0 36.0 41.0 31.0 41.0 28 37.24041984162376 39.0 36.0 41.0 31.0 41.0 29 37.122045330549945 39.0 36.0 41.0 31.0 41.0 30 37.00550015371025 39.0 36.0 41.0 31.0 41.0 31 36.854721942411516 39.0 35.0 41.0 30.0 41.0 32 36.74059056328427 39.0 35.0 41.0 30.0 41.0 33 36.55447904376428 39.0 35.0 40.0 30.0 41.0 34 36.43025017710094 39.0 35.0 40.0 30.0 41.0 35 36.25985051830124 39.0 35.0 40.0 30.0 41.0 36 36.131474512653455 38.0 35.0 40.0 29.0 41.0 37 35.981572996572204 38.0 35.0 40.0 29.0 41.0 38 35.91486031808908 38.0 35.0 40.0 28.0 41.0 39 35.80021191357717 38.0 35.0 40.0 27.0 41.0 40 35.64731092120436 38.0 35.0 40.0 26.0 41.0 41 35.533673480546845 38.0 35.0 40.0 26.0 41.0 42 35.34385165077517 38.0 34.0 40.0 25.0 41.0 43 34.997202230439 38.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 3.0 14 2.0 15 3.0 16 10.0 17 60.0 18 102.0 19 229.0 20 481.0 21 979.0 22 1660.0 23 3119.0 24 4887.0 25 7633.0 26 11032.0 27 16060.0 28 22221.0 29 29069.0 30 37926.0 31 47185.0 32 59197.0 33 74032.0 34 94313.0 35 119198.0 36 157441.0 37 227319.0 38 327189.0 39 404604.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.053848406456076 20.67263119139417 13.290347117841689 23.98317328430807 2 19.043181036651085 22.41836649140863 35.07029965600496 23.468152815935316 3 19.663003947862457 24.33427665657728 31.96772206270649 24.034997332853774 4 13.791515437247941 16.04558815130921 36.49275739176186 33.67013901968099 5 13.233358890953209 37.83106939805122 35.02479413154924 13.910777579446327 6 32.76707611512837 37.13153587524317 13.991095741436274 16.110292268192186 7 26.793762158602245 32.05873311161794 21.82533655254035 19.32216817723946 8 26.77340922042779 34.5459229115759 19.138323428236756 19.542344439759557 9 24.879431624456092 14.265526254075144 21.291846552212274 39.56319556925649 10 16.606235654216338 26.75178042642747 33.71497623870412 22.92700768065207 11 33.82372775909898 22.19156792960192 23.227076819886825 20.757627491412276 12 21.053929818208772 26.54569933303118 30.762402837503355 21.637968011256696 13 30.867995095853225 20.675304413124547 26.01706973584924 22.43963075517299 14 20.92695178601589 22.16513948749479 27.13800021142754 29.769908515061783 15 23.559832170279364 28.786102163243932 24.873963670916684 22.78010199556002 16 22.659199467299814 27.77191829176271 26.004736462865914 23.564145778071563 17 22.275652904030125 26.384759233854655 26.793944423720223 24.545643438394997 18 23.048760779462853 25.607884545983666 28.760463536648047 22.582891137905435 19 23.359644315697768 24.86235945840528 29.432049741365795 22.345946484531158 20 24.07181488668578 24.560406912951393 29.238605696149467 22.12917250421336 21 23.013158326417386 25.36808440576104 29.49256176053523 22.126195507286354 22 22.278508390878482 25.657399903034957 29.149660318575126 22.914431387511435 23 22.739456874250436 25.799505940020197 30.009161859930472 21.4518753257989 24 23.074763936294694 25.986388440989238 27.767969214206474 23.170878408509594 25 22.952038756854687 25.685043445928624 28.833308828800803 22.529608968415886 26 22.58556435963581 26.46197888883893 28.917636823386317 22.03481992813894 27 21.962764451497428 26.475223487412165 28.462763843947037 23.09924821714337 28 22.178809371343306 26.13207902529475 28.780451944586545 22.908659658775395 29 22.573048821534503 26.210149250829613 28.38262794707507 22.834173980560816 30 22.344913648862605 26.200124669340696 29.576160694648816 21.87880098714788 31 22.68149656673273 25.851269233526576 29.659516608605102 21.807717591135596 32 22.3612567544415 25.73966222628336 28.759977496333434 23.13910352294171 33 22.12340077547732 25.800660285767403 29.355741411971415 22.72019752678386 34 21.78621030721393 26.103584911850515 29.697123977948355 22.413080802987203 35 21.5454988414014 27.567416829388915 28.79873921142389 22.088345117785796 36 22.972573960147123 25.805824464110177 28.803113574255416 22.418488001487283 37 22.120241513432333 26.045381584175498 28.856578008862943 22.977798893529226 38 22.036035028925475 24.991767692171226 30.06037835808291 22.911818920820387 39 21.462021417366465 25.047662328351826 30.62722287500137 22.863093379280343 40 20.842745301509034 25.63188278651773 30.339000968435325 23.186370943537913 41 21.624541147565484 24.514962143534998 30.511606035162586 23.348890673736932 42 20.499236309155663 26.237185243330007 30.061836479026756 23.20174196848758 43 20.94226205592623 25.749869072890252 29.5640704418228 23.743798429360723 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 67.0 1 158.0 2 249.0 3 708.5 4 1168.0 5 1168.0 6 1823.5 7 2479.0 8 2656.5 9 2834.0 10 4197.5 11 5561.0 12 5561.0 13 10065.5 14 14570.0 15 22727.0 16 30884.0 17 28642.5 18 26401.0 19 26401.0 20 28631.0 21 30861.0 22 24927.0 23 18993.0 24 22066.5 25 25140.0 26 25140.0 27 27672.5 28 30205.0 29 33885.0 30 37565.0 31 42234.5 32 46904.0 33 46904.0 34 53616.5 35 60329.0 36 67052.5 37 73776.0 38 79386.5 39 84997.0 40 84997.0 41 88672.0 42 92347.0 43 99271.5 44 106196.0 45 109631.0 46 113066.0 47 113066.0 48 136181.5 49 159297.0 50 152666.0 51 146035.0 52 137131.5 53 128228.0 54 128228.0 55 116840.0 56 105452.0 57 91541.5 58 77631.0 59 69612.0 60 61593.0 61 61593.0 62 54805.0 63 48017.0 64 41826.5 65 35636.0 66 30794.0 67 25952.0 68 25952.0 69 22380.5 70 18809.0 71 16153.0 72 13497.0 73 11153.5 74 8810.0 75 8810.0 76 7140.0 77 5470.0 78 4312.5 79 3155.0 80 2459.0 81 1763.0 82 1763.0 83 1352.5 84 942.0 85 738.5 86 535.0 87 403.0 88 271.0 89 271.0 90 214.0 91 157.0 92 112.0 93 67.0 94 47.0 95 27.0 96 27.0 97 18.5 98 10.0 99 9.0 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1645954.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 51.57811839638008 #Duplication Level Percentage of deduplicated Percentage of total 1 81.6658217329497 42.12169422279749 2 10.253691001243794 10.577321769240987 3 3.0933944855472184 4.78654401066791 4 1.3391369850895194 2.762806638636748 5 0.761241071319802 1.963169105235998 6 0.5065302419378687 1.567552607401106 7 0.3573931238961213 1.2903565400856394 8 0.27073544079311795 1.117121969545887 9 0.20622769065656213 0.9573152620766585 >10 1.332694583183054 13.104646999960265 >50 0.12096348542097454 4.329810794686229 >100 0.08237503164814976 8.101106542833225 >500 0.0068447870628698115 2.281802908821339 >1k 0.0024782849710390693 2.2803420485281256 >5k 1.180135700494795E-4 0.3396500181722483 >10k+ 3.540407101484385E-4 2.418758561310149 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 15270 0.9277294505192734 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 13406 0.8144820572142356 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 11061 0.6720114899930375 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5580 0.33901311944319223 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 3191 0.19386933049161764 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 3089 0.18767231648029048 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 3037 0.18451305443530014 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 2900 0.1761896140475372 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 2602 0.15808461232816956 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 2387 0.14502227887292113 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1666 0.10121789551834376 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 6.075503932673696E-5 0.0 3 0.0 0.0 0.0 6.075503932673696E-5 0.0 4 0.0 0.0 0.0 1.2151007865347392E-4 0.0 5 1.2151007865347392E-4 0.0 0.0 1.2151007865347392E-4 0.0 6 1.8226511798021086E-4 0.0 0.0 1.2151007865347392E-4 0.0 7 1.8226511798021086E-4 0.0 0.0 1.8226511798021086E-4 0.0 8 1.8226511798021086E-4 0.0 0.0 1.8226511798021086E-4 0.0 9 2.4302015730694784E-4 0.0 0.0 3.6453023596042173E-4 0.0 10 4.252852752871587E-4 0.0 0.0 3.6453023596042173E-4 0.0 11 4.252852752871587E-4 0.0 0.0 6.075503932673695E-4 0.0 12 4.252852752871587E-4 0.0 0.0 7.290604719208435E-4 0.0 13 4.252852752871587E-4 0.0 0.0 7.898155112475804E-4 0.0 14 4.252852752871587E-4 0.0 0.0 9.113255899010544E-4 0.0 15 4.252852752871587E-4 0.0 0.0 0.0010328356685545283 0.0 16 4.252852752871587E-4 0.0 0.0 0.0017011411011486348 0.0 17 4.252852752871587E-4 0.0 0.0 0.0024909566123962152 0.0 18 4.252852752871587E-4 0.0 0.0 0.003098507005663585 0.0 19 5.467953539406326E-4 0.0 0.0 0.003827567477584428 0.0 20 5.467953539406326E-4 0.0 0.0 0.007169094640554961 0.0 21 5.467953539406326E-4 0.0 0.0 0.012090252826020654 0.0 22 5.467953539406326E-4 0.0 0.0 0.020231428095803406 0.0 23 5.467953539406326E-4 0.0 0.0 0.025699381635209732 0.0 24 5.467953539406326E-4 0.0 0.0 0.033658291787012275 0.0 25 5.467953539406326E-4 0.0 0.0 0.039490775562379024 0.0 26 5.467953539406326E-4 0.0 0.0 0.04890780665802325 0.0 27 5.467953539406326E-4 0.0 0.0 0.10279752654083893 0.0 28 5.467953539406326E-4 0.0 0.0 0.22060154779538188 0.0 29 5.467953539406326E-4 0.0 0.0 0.37157782052232324 0.0 30 5.467953539406326E-4 0.0 0.0 0.5743781417949712 0.0 31 5.467953539406326E-4 0.0 0.0 0.8577396452148723 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 4725 0.0 21.612698 1 TCTATAC 105 2.2611857E-8 19.38095 3 GTATTGG 685 0.0 18.90511 1 TAATACT 470 0.0 18.5 4 TCTACCG 50 0.007036143 18.499998 3 ATTAGAG 345 0.0 18.231884 3 TCGGGTA 205 0.0 18.04878 25 GTATTAG 460 0.0 17.293478 1 TATGCCG 120 1.0419717E-7 16.958334 5 ATAACAC 120 1.0419717E-7 16.958334 3 GTCGGGT 235 0.0 16.531916 24 TATTGCG 135 2.221168E-8 16.444445 9 TTAACGG 320 0.0 16.1875 35 CGATATA 70 0.0025931324 15.857142 14 CGGGTAA 235 0.0 15.744681 26 AATACTG 560 0.0 15.526785 5 CGACGAG 120 1.936638E-6 15.416667 24 TATACCG 85 5.3659006E-4 15.235293 5 ACCGTTA 195 4.1836756E-11 15.179486 8 TAACACT 185 3.0559022E-10 15.0 4 >>END_MODULE