##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088597_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 817946 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74383883532654 31.0 31.0 34.0 30.0 34.0 2 31.925556210312173 31.0 31.0 34.0 30.0 34.0 3 31.996769957918982 33.0 31.0 34.0 30.0 34.0 4 35.67947639575229 37.0 35.0 37.0 35.0 37.0 5 35.59593053820179 37.0 35.0 37.0 33.0 37.0 6 35.63337433033477 37.0 35.0 37.0 33.0 37.0 7 35.50001100317136 37.0 35.0 37.0 33.0 37.0 8 35.529624205020866 37.0 35.0 37.0 33.0 37.0 9 37.14169517303098 39.0 37.0 39.0 33.0 39.0 10 37.02345998391092 39.0 37.0 39.0 33.0 39.0 11 37.064215730622806 39.0 37.0 39.0 33.0 39.0 12 36.969367170937936 39.0 37.0 39.0 33.0 39.0 13 37.00514092617361 39.0 37.0 39.0 33.0 39.0 14 38.046225545451655 40.0 37.0 41.0 33.0 41.0 15 38.00252217139029 40.0 37.0 41.0 33.0 41.0 16 37.89498695512907 40.0 37.0 41.0 33.0 41.0 17 37.94644511984899 40.0 37.0 41.0 33.0 41.0 18 37.92606846906764 40.0 37.0 41.0 33.0 41.0 19 37.95310326109548 40.0 37.0 41.0 33.0 41.0 20 37.845563154535874 40.0 37.0 41.0 32.0 41.0 21 37.74334980548838 40.0 37.0 41.0 32.0 41.0 22 37.59456981267712 39.0 37.0 41.0 32.0 41.0 23 37.46126516909429 39.0 36.0 41.0 32.0 41.0 24 37.31790729461358 39.0 36.0 41.0 31.0 41.0 25 37.11828898240226 39.0 36.0 41.0 31.0 41.0 26 37.262502659099745 39.0 36.0 41.0 31.0 41.0 27 37.188255703921776 39.0 36.0 41.0 31.0 41.0 28 37.054344663339634 39.0 36.0 41.0 31.0 41.0 29 36.9169333916909 39.0 35.0 41.0 31.0 41.0 30 36.77839123854142 39.0 35.0 41.0 30.0 41.0 31 36.591537827680554 39.0 35.0 40.0 30.0 41.0 32 36.45348837209303 39.0 35.0 40.0 30.0 41.0 33 36.247286495685536 38.0 35.0 40.0 30.0 41.0 34 36.09716044824475 38.0 35.0 40.0 30.0 41.0 35 35.90940844505627 38.0 35.0 40.0 29.0 41.0 36 35.759449890335055 38.0 35.0 40.0 27.0 41.0 37 35.58536138082465 38.0 35.0 40.0 27.0 41.0 38 35.470336672592076 38.0 35.0 40.0 26.0 41.0 39 35.315569731987196 38.0 34.0 40.0 25.0 41.0 40 35.11651135894056 38.0 34.0 40.0 24.0 41.0 41 34.97058852295873 38.0 34.0 40.0 24.0 41.0 42 34.731551960642875 38.0 34.0 40.0 23.0 41.0 43 34.371024493059444 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 1.0 14 7.0 15 3.0 16 7.0 17 19.0 18 65.0 19 123.0 20 271.0 21 543.0 22 994.0 23 1709.0 24 2837.0 25 4375.0 26 6403.0 27 9323.0 28 12476.0 29 16325.0 30 20830.0 31 25801.0 32 31643.0 33 39442.0 34 49427.0 35 61127.0 36 79459.0 37 114548.0 38 155236.0 39 184951.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.728793832355684 21.146750518982916 13.942974230572677 23.181481418088726 2 19.048445740916883 22.864223310585295 35.432167893724035 22.655163054773787 3 19.923686893755825 24.55761138265851 32.42854662777249 23.090155095813174 4 13.882456788100924 16.238969320713103 35.963987842718225 33.91458604846775 5 13.015162370132014 38.00299775290789 35.02370572140459 13.958134155555502 6 32.438327224535605 36.65193056754358 13.682443584295296 17.22729862362552 7 25.89364090049954 32.84813422890998 21.781266733989774 19.476958136600704 8 26.514342022578507 34.8040090666132 18.998197925046398 19.683450985761898 9 24.28485499042724 14.69118988295071 22.20403302907527 38.81992209754678 10 16.97459245475863 27.077826653593267 33.550136561582306 22.3974443300658 11 32.77367943605079 22.39157597200793 23.581630083159524 21.253114508781753 12 20.91164942428962 27.25901220862991 30.828807769706067 21.000530597374397 13 31.116846344379702 20.84550813867908 26.588674557978152 21.448970958963063 14 20.363446975717224 23.223904756548723 27.793399564274413 28.619248703459643 15 22.982201759040326 29.089450892846223 25.958559611514698 21.969787736598747 16 21.69226330344546 28.193303714426136 27.148002435368596 22.96643054675981 17 21.581253530184146 26.76851528095987 27.256567059439128 24.393664129416855 18 22.773508275607437 25.554865480117268 29.59412968582278 22.077496558452513 19 22.723015944817874 24.88709523611583 30.6710956469009 21.718793172165398 20 23.609993813772547 24.443545172908728 30.669995329765044 21.276465683553685 21 22.419939702620955 25.531269790426265 31.016595227557808 21.032195279394973 22 21.06679414044448 25.994014274780973 30.55116107909324 22.388030505681304 23 21.988859900286815 26.04524015032777 31.643898252451873 20.32200169693354 24 22.13324596000225 26.187058803392887 29.14336643250288 22.53632880410198 25 22.118819579776662 26.202585500754328 30.199181853080763 21.479413066388243 26 21.692630075824077 26.9993373645693 30.257620918740358 21.05041164086627 27 20.846119425976774 27.020732419988608 29.785707124920226 22.347441029114393 28 21.17181329818839 26.60701317690899 30.158592376513855 22.06258114838877 29 21.58736640316109 26.6454020192042 29.527499370374084 22.239732207260626 30 21.582965134617687 26.606524147070832 31.091294535336072 20.7192161829754 31 21.964530665838577 26.335479359273105 30.846535101339207 20.85345487354911 32 21.50887711413712 26.22459184347133 29.995500925488965 22.271030116902583 33 21.221572084220718 26.341347717330972 30.617180107244245 21.819900091204065 34 20.745868309154883 26.68379086149941 31.072344629107544 21.497996200238155 35 20.41589542585941 28.46813848346957 29.829842067813768 21.286124022857255 36 22.36981414421001 26.34758284776746 29.806857665420456 21.475745342602078 37 21.34859758468163 26.696750152210534 29.901973968941714 22.05267829416612 38 21.26032769889455 25.439943468150712 31.20254882351647 22.097180009438276 39 20.655275531636562 25.5335926821575 31.809923882505693 22.001207903700244 40 19.840429563809835 26.29513439762527 31.357326767292705 22.507109271272185 41 21.022170167712783 25.032826127886192 31.41417648597829 22.530827218422733 42 19.69506544441809 27.141889562391647 30.689312008372188 22.473732984818067 43 20.21490416237747 26.759468228953992 29.886325014120736 23.139302594547807 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 45.0 1 114.5 2 184.0 3 470.0 4 756.0 5 756.0 6 1151.0 7 1546.0 8 1707.5 9 1869.0 10 2841.5 11 3814.0 12 3814.0 13 6972.0 14 10130.0 15 15138.5 16 20147.0 17 18487.5 18 16828.0 19 16828.0 20 18458.5 21 20089.0 22 16112.5 23 12136.0 24 13344.0 25 14552.0 26 14552.0 27 15736.0 28 16920.0 29 18153.0 30 19386.0 31 21766.0 32 24146.0 33 24146.0 34 27036.5 35 29927.0 36 33154.5 37 36382.0 38 38444.5 39 40507.0 40 40507.0 41 42038.5 42 43570.0 43 46769.0 44 49968.0 45 52321.0 46 54674.0 47 54674.0 48 69504.5 49 84335.0 50 79448.5 51 74562.0 52 68453.0 53 62344.0 54 62344.0 55 55439.0 56 48534.0 57 41258.0 58 33982.0 59 30177.0 60 26372.0 61 26372.0 62 23338.5 63 20305.0 64 17983.5 65 15662.0 66 13351.5 67 11041.0 68 11041.0 69 9631.0 70 8221.0 71 6982.5 72 5744.0 73 4807.0 74 3870.0 75 3870.0 76 3093.5 77 2317.0 78 1843.0 79 1369.0 80 1088.5 81 808.0 82 808.0 83 613.0 84 418.0 85 323.5 86 229.0 87 176.5 88 124.0 89 124.0 90 103.0 91 82.0 92 57.0 93 32.0 94 21.5 95 11.0 96 11.0 97 7.0 98 3.0 99 4.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 817946.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.393209679062686 #Duplication Level Percentage of deduplicated Percentage of total 1 85.96948234001155 48.480950436007475 2 7.843634043160318 8.846553984835479 3 2.169417015244499 3.6702116586602807 4 1.034945373084172 2.3345556572284587 5 0.6156946328289151 1.736049826369726 6 0.390182410795958 1.3202183103059177 7 0.31067634247589954 1.2264025286497384 8 0.21426409543816102 0.966643204859113 9 0.1605150878929464 0.8146764907380094 >10 1.1065036542535336 11.841756370622724 >50 0.110724395842956 4.3444894816168 >100 0.0669996104810607 7.2289870419930375 >500 0.0034804992450103442 1.4042358543298057 >1k 0.002827905636570905 2.7095974098398488 >5k 6.525936084394396E-4 3.0746717439435876 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 9303 1.1373611460903286 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 9123 1.1153548033733278 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 6638 0.8115450164191768 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3897 0.476437319823069 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 2217 0.27104478779772745 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 1998 0.24427040415870974 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 1992 0.24353685940147637 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 1986 0.242803314644243 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 1859 0.22727661728280352 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 1630 0.19927965904839684 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1137 0.1390067314957222 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 1126 0.13766189944079438 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1097 0.13411643311416646 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 1097 0.13411643311416646 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 1031 0.12604744078459948 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1021 0.12482486618921053 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 995 0.1216461722411993 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 948 0.11590007164287129 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 931 0.11382169483071009 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 878 0.10734204947514872 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 854 0.10440787044621529 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 1.2225745953889377E-4 0.0 0.0 0.0 0.0 9 1.2225745953889377E-4 0.0 0.0 1.2225745953889377E-4 0.0 10 1.2225745953889377E-4 0.0 0.0 1.2225745953889377E-4 0.0 11 1.2225745953889377E-4 0.0 0.0 7.335447572333626E-4 0.0 12 1.2225745953889377E-4 0.0 0.0 0.0011003171358500438 0.0 13 1.2225745953889377E-4 0.0 0.0 0.0011003171358500438 0.0 14 1.2225745953889377E-4 0.0 0.0 0.0014670895144667253 0.0 15 1.2225745953889377E-4 0.0 0.0 0.0017116044335445128 0.0 16 1.2225745953889377E-4 0.0 0.0 0.002689664109855663 0.0 17 1.2225745953889377E-4 0.0 0.0 0.005379328219711326 0.0 18 1.2225745953889377E-4 0.0 0.0 0.0061128729769446884 0.0 19 1.2225745953889377E-4 0.0 0.0 0.00745770503187252 0.0 20 1.2225745953889377E-4 0.0 0.0 0.011614458656194909 0.0 21 1.2225745953889377E-4 0.0 0.0 0.018338618930834064 0.0 22 1.2225745953889377E-4 0.0 0.0 0.03178693948011238 0.0 23 1.2225745953889377E-4 0.0 0.0 0.040344961647834944 0.0 24 1.2225745953889377E-4 0.0 0.0 0.05354876727803547 0.0 25 1.2225745953889377E-4 0.0 0.0 0.06174001706714135 0.0 26 1.2225745953889377E-4 0.0 0.0 0.07213190112794732 0.0 27 1.2225745953889377E-4 0.0 0.0 0.12531389602736612 0.0 28 1.2225745953889377E-4 0.0 0.0 0.24720458318764318 0.0 29 1.2225745953889377E-4 0.0 0.0 0.4100515192934497 0.0 30 1.2225745953889377E-4 0.0 0.0 0.6425852073364257 0.0 31 1.2225745953889377E-4 0.0 0.0 0.9811161127996225 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 3160 0.0 21.719936 1 CGAATTA 60 3.724596E-5 21.583332 15 GTTAGAC 65 6.899022E-5 19.923075 3 TACACCG 65 6.899022E-5 19.923075 5 GTATTGG 380 0.0 19.473684 1 GTCTAAC 60 9.2337135E-4 18.5 1 CTACCCT 120 5.167749E-9 18.5 4 CCCGAAT 90 2.1506712E-6 18.5 13 GTTCTAT 50 0.0070331916 18.499998 1 TAGGGGT 95 3.6038164E-6 17.526316 4 GTATATA 85 2.7215603E-5 17.411764 1 GTATTAG 260 0.0 17.076921 1 GTACAAG 120 1.04007995E-7 16.958332 1 ATAGGGG 120 1.04007995E-7 16.958332 3 GGGGTTA 125 1.6558806E-7 16.279999 6 GGGTTAG 80 3.3810726E-4 16.1875 7 GCACCGC 185 1.8189894E-11 16.0 10 ATTGGAC 530 0.0 15.707547 3 GTTTAGG 165 9.713403E-10 15.69697 1 TAATACT 310 0.0 15.5161295 4 >>END_MODULE