##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088596_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1872326 Sequences flagged as poor quality 0 Sequence length 43 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.677164126332702 31.0 31.0 34.0 30.0 34.0 2 31.85183456299811 31.0 31.0 34.0 30.0 34.0 3 31.913793858548136 31.0 31.0 34.0 30.0 34.0 4 35.60291316789918 37.0 35.0 37.0 33.0 37.0 5 35.52776065706506 37.0 35.0 37.0 33.0 37.0 6 35.573705647413966 37.0 35.0 37.0 33.0 37.0 7 35.427504077815506 37.0 35.0 37.0 33.0 37.0 8 35.47077966123421 37.0 35.0 37.0 33.0 37.0 9 37.059773244616586 39.0 37.0 39.0 33.0 39.0 10 36.94046923452433 39.0 37.0 39.0 33.0 39.0 11 36.980002948204536 39.0 37.0 39.0 33.0 39.0 12 36.87743801026103 39.0 37.0 39.0 32.0 39.0 13 36.92264968814192 39.0 37.0 39.0 33.0 39.0 14 37.91551204224051 40.0 37.0 41.0 33.0 41.0 15 37.879068068274435 40.0 37.0 41.0 32.0 41.0 16 37.75971545553499 40.0 37.0 41.0 32.0 41.0 17 37.83541915243392 40.0 37.0 41.0 32.0 41.0 18 37.82287539669908 40.0 37.0 41.0 32.0 41.0 19 37.85244823818074 40.0 37.0 41.0 32.0 41.0 20 37.73906200095496 40.0 37.0 41.0 32.0 41.0 21 37.636305322897826 40.0 37.0 41.0 32.0 41.0 22 37.48457854027557 39.0 36.0 41.0 32.0 41.0 23 37.34112435548083 39.0 36.0 41.0 31.0 41.0 24 37.194596453822676 39.0 36.0 41.0 31.0 41.0 25 36.99270853473166 39.0 36.0 41.0 31.0 41.0 26 37.1215301181525 39.0 36.0 41.0 31.0 41.0 27 37.04890494497219 39.0 36.0 41.0 31.0 41.0 28 36.91226688087438 39.0 35.0 41.0 31.0 41.0 29 36.75167732542303 39.0 35.0 41.0 30.0 41.0 30 36.59672193838039 39.0 35.0 40.0 30.0 41.0 31 36.372250345292436 38.0 35.0 40.0 30.0 41.0 32 36.23664949373133 38.0 35.0 40.0 30.0 41.0 33 36.00590228411078 38.0 35.0 40.0 30.0 41.0 34 35.84037929292228 38.0 35.0 40.0 29.0 41.0 35 35.62689456857406 38.0 35.0 40.0 27.0 41.0 36 35.45834539497929 38.0 34.0 40.0 26.0 41.0 37 35.26562468288108 38.0 34.0 40.0 25.0 41.0 38 35.14189996827476 38.0 34.0 40.0 25.0 41.0 39 34.96483144495136 38.0 34.0 40.0 24.0 41.0 40 34.74808019543605 38.0 33.0 40.0 23.0 41.0 41 34.58310411755218 38.0 33.0 40.0 22.0 41.0 42 34.31011586657452 38.0 33.0 40.0 21.0 41.0 43 33.92514177552413 38.0 33.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 2.0 13 2.0 14 6.0 15 14.0 16 24.0 17 54.0 18 127.0 19 332.0 20 711.0 21 1426.0 22 2513.0 23 4585.0 24 7448.0 25 11274.0 26 16620.0 27 23451.0 28 31626.0 29 40699.0 30 51180.0 31 62676.0 32 76363.0 33 94075.0 34 115946.0 35 142370.0 36 184732.0 37 267422.0 38 347694.0 39 388952.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.054375146208514 21.146317468218676 14.162223886224941 22.63708349934787 2 19.236874347736453 23.039043414448123 35.21496790623001 22.509114331585415 3 20.16790879366093 24.607466862074233 32.727954426739785 22.496669917525047 4 13.940841498756093 16.080479574603995 35.704412586269704 34.27426634037021 5 12.913296081985722 38.26117887590089 34.617101936308096 14.208423105805293 6 32.42672483317542 36.34388455856512 13.263715827265123 17.965674780994334 7 25.671010283465595 33.135575749094976 21.457214181718353 19.736199785721077 8 26.966083897782756 34.394597949288745 18.70550320830881 19.933814944619687 9 24.014033880851944 14.626833147646295 22.30103091021542 39.058102061286334 10 17.192251776667096 26.858997845460674 32.971501757706726 22.977248620165504 11 32.5231823945189 22.2657806386281 23.694431418460248 21.516605548392747 12 21.25383079656 27.155046717291754 30.78507695775202 20.80604552839623 13 31.98043503107899 20.544819652133228 26.670942987492563 20.803802329295216 14 20.360289821323853 23.31452962785327 27.962812031665425 28.362368519157457 15 22.927417554421613 28.963332240218854 26.093212399977357 22.016037805382183 16 21.58384811192068 27.96409385972315 27.347481154457075 23.104576873899095 17 21.63015415050584 26.37104863148832 27.14778302496467 24.85101419304117 18 23.21566863890156 24.72934734656251 29.935331774487988 22.11965224004794 19 22.87694557464886 24.211862677760177 31.180841370573287 21.730350377017675 20 24.019214602585233 23.603047759845243 31.086306551316383 21.291431086253144 21 22.66031663289406 24.738747418985795 31.68059408457715 20.920341863542994 22 21.078060124145047 25.169014370360713 31.20359381859783 22.549331686896405 23 22.04087322400052 25.40412299994766 32.49674469082841 20.058259085223405 24 22.221824618148762 25.412988977346895 29.663477407246386 22.701708997257956 25 22.04530621270014 25.683721745037992 30.664745348833485 21.606226693428386 26 21.84550126420292 26.365867909755032 30.76066881515292 21.02796201088913 27 20.63999538541899 26.51220994634481 30.37814995892809 22.4696447093081 28 21.147599296276397 26.08146230944825 30.6001732604258 22.170765133849553 29 21.51089073163541 26.068804257378254 29.809552396324147 22.610752614662193 30 21.377313566120428 26.254989782762188 31.650791582235144 20.716905068882234 31 22.156130930190578 25.727731175019734 31.521433767410162 20.594704127379526 32 21.73830839287603 25.570386780934516 30.31080057639535 22.380504249794107 33 21.222639647155464 25.776654279222743 31.030173164288698 21.970532909333095 34 20.566664138616886 26.345839346353145 31.540340731261544 21.547155783768428 35 20.16785538415853 28.58839753333554 30.2390716146654 21.004675467840535 36 22.433860342696732 25.82146485174056 30.306367587695732 21.438307217866974 37 21.383509068399416 26.707154630123174 30.024685872011602 21.88465042946581 38 21.251427368951774 25.049056627959022 31.55107604124495 22.14843996184425 39 20.581618799290293 24.92343747830239 32.35312653886129 22.141817183546028 40 19.49040925565313 25.96657846977503 31.701584019022327 22.841428255549516 41 21.10123984818883 24.685978830609624 31.77251183821621 22.440269482985332 42 19.533403905089177 26.89029581387002 31.072847356710316 22.503452924330485 43 19.998654080539392 26.824708944916644 30.07932379297195 23.097313181572012 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 94.0 1 239.5 2 385.0 3 1105.0 4 1825.0 5 1825.0 6 2845.0 7 3865.0 8 4305.0 9 4745.0 10 7133.0 11 9521.0 12 9521.0 13 17721.5 14 25922.0 15 39329.5 16 52737.0 17 48163.5 18 43590.0 19 43590.0 20 47085.5 21 50581.0 22 38370.5 23 26160.0 24 28529.5 25 30899.0 26 30899.0 27 33106.5 28 35314.0 29 38168.0 30 41022.0 31 44290.5 32 47559.0 33 47559.0 34 52358.0 35 57157.0 36 64263.0 37 71369.0 38 76527.5 39 81686.0 40 81686.0 41 85519.0 42 89352.0 43 98040.0 44 106728.0 45 116814.5 46 126901.0 47 126901.0 48 170028.0 49 213155.0 50 200332.0 51 187509.0 52 171516.5 53 155524.0 54 155524.0 55 136328.5 56 117133.0 57 98230.5 58 79328.0 59 69664.0 60 60000.0 61 60000.0 62 52796.5 63 45593.0 64 39514.5 65 33436.0 66 29149.0 67 24862.0 68 24862.0 69 21237.5 70 17613.0 71 14836.0 72 12059.0 73 9980.0 74 7901.0 75 7901.0 76 6325.0 77 4749.0 78 3758.0 79 2767.0 80 2154.0 81 1541.0 82 1541.0 83 1168.5 84 796.0 85 628.5 86 461.0 87 351.0 88 241.0 89 241.0 90 194.0 91 147.0 92 105.0 93 63.0 94 42.0 95 21.0 96 21.0 97 16.5 98 12.0 99 7.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1872326.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.3988753252535 #Duplication Level Percentage of deduplicated Percentage of total 1 81.13476381583324 37.645617908347354 2 10.292000155472019 9.550744641224716 3 3.2171111826089156 4.478110220080498 4 1.4066661321827418 2.610709059656144 5 0.8272056230648858 1.9190705286468137 6 0.5160633460696806 1.4366855312532156 7 0.37715593169430933 1.224972773700486 8 0.26517199590089524 0.9842945902043416 9 0.21354651995126087 0.8917486519824281 >10 1.4826584041577184 13.30736291435461 >50 0.15156415238263454 4.8593589451705315 >100 0.1025508359550639 8.907807221376945 >500 0.007291794852805193 2.250922047388437 >1k 0.005208424894860852 4.188968400543801 >5k 5.787138772067613E-4 1.5138973258548465 >10k+ 4.6297110176540904E-4 4.229729240214742 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 25141 1.3427682999648565 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 24887 1.329202286353979 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 18631 0.995072439308112 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10102 0.5395427932956119 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 5890 0.3145819691656261 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 5849 0.31239217956701987 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 5546 0.2962091003382958 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 5527 0.29519431979260025 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 5378 0.28723630393425076 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 4517 0.24125072236352002 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 3188 0.1702694936672353 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 3006 0.16054896422951986 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2846 0.15200344384471506 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2831 0.15120230130863963 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 2722 0.14538066554649137 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 2700 0.1442056564935807 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2571 0.13731583068333186 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 2561 0.13678173565928156 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 2493 0.13314988949573953 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 2486 0.1327760229789043 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 2124 0.11344178310828348 No Hit CTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAG 2115 0.11296109758663822 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 2067 0.11039744147119679 No Hit ACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGG 2038 0.10884856590145091 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 5.3409502405029894E-5 0.0 5.3409502405029894E-5 0.0 5.3409502405029894E-5 7 5.3409502405029894E-5 0.0 5.3409502405029894E-5 5.3409502405029894E-5 5.3409502405029894E-5 8 5.3409502405029894E-5 0.0 5.3409502405029894E-5 5.3409502405029894E-5 5.3409502405029894E-5 9 1.0681900481005979E-4 0.0 5.3409502405029894E-5 1.0681900481005979E-4 5.3409502405029894E-5 10 1.0681900481005979E-4 0.0 1.0681900481005979E-4 3.2045701443017934E-4 5.3409502405029894E-5 11 1.0681900481005979E-4 0.0 1.6022850721508967E-4 8.545520384804783E-4 5.3409502405029894E-5 12 1.0681900481005979E-4 0.0 1.6022850721508967E-4 0.0011750090529106577 5.3409502405029894E-5 13 1.0681900481005979E-4 0.0 1.6022850721508967E-4 0.0016022850721508968 5.3409502405029894E-5 14 2.1363800962011958E-4 0.0 1.6022850721508967E-4 0.0019227420865810761 5.3409502405029894E-5 15 2.1363800962011958E-4 0.0 1.6022850721508967E-4 0.003097751139491734 5.3409502405029894E-5 16 2.6704751202514946E-4 0.0 1.6022850721508967E-4 0.00523413123569293 5.3409502405029894E-5 17 2.6704751202514946E-4 0.0 1.6022850721508967E-4 0.007103463819868976 5.3409502405029894E-5 18 3.2045701443017934E-4 0.0 1.6022850721508967E-4 0.008171653867969574 5.3409502405029894E-5 19 3.2045701443017934E-4 0.0 1.6022850721508967E-4 0.01009439595455065 5.3409502405029894E-5 20 3.2045701443017934E-4 0.0 1.6022850721508967E-4 0.015595574702268728 5.3409502405029894E-5 21 3.2045701443017934E-4 0.0 1.6022850721508967E-4 0.026758160704919976 5.3409502405029894E-5 22 3.2045701443017934E-4 0.0 1.6022850721508967E-4 0.04422306799136475 5.3409502405029894E-5 23 3.2045701443017934E-4 0.0 1.6022850721508967E-4 0.05554588250123109 5.3409502405029894E-5 24 3.738665168352093E-4 0.0 1.6022850721508967E-4 0.07204941874438532 5.3409502405029894E-5 25 3.738665168352093E-4 0.0 1.6022850721508967E-4 0.08225063370374604 5.3409502405029894E-5 26 4.2727601924023916E-4 0.0 1.6022850721508967E-4 0.09592346631943369 5.3409502405029894E-5 27 4.2727601924023916E-4 0.0 1.6022850721508967E-4 0.157237575080408 5.3409502405029894E-5 28 4.2727601924023916E-4 0.0 1.6022850721508967E-4 0.3004818605306982 5.3409502405029894E-5 29 4.2727601924023916E-4 0.0 1.6022850721508967E-4 0.4911537841166549 5.3409502405029894E-5 30 4.2727601924023916E-4 0.0 1.6022850721508967E-4 0.752326250877251 5.3409502405029894E-5 31 4.2727601924023916E-4 0.0 1.6022850721508967E-4 1.1209052269743625 5.3409502405029894E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 8370 0.0 22.257467 1 GTATTGG 1280 0.0 18.066406 1 ATTAGAG 290 0.0 17.862068 3 CTAATAC 350 0.0 17.442856 3 GTATTAG 345 0.0 17.15942 1 ATTGGAC 1400 0.0 16.782143 3 AGTTCCG 200 0.0 16.650002 32 GTCGAAT 90 4.4483593E-5 16.444445 8 TTGGACC 1715 0.0 16.396502 4 TATTGGA 1460 0.0 16.092466 2 TATACCG 105 9.349298E-6 15.857142 5 TAATACT 295 0.0 15.677966 4 TGGACCC 1705 0.0 15.624634 5 CTCTAAT 315 0.0 15.269842 1 TTAGAGT 85 5.36639E-4 15.235294 4 GTCGGGT 220 1.8189894E-12 15.136364 24 TAGCGAA 270 0.0 15.074075 10 GTCTAAC 135 3.9757288E-7 15.074075 1 TATACTG 175 2.240995E-9 14.799999 5 GTATCAA 12615 0.0 14.753073 2 >>END_MODULE