##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088590_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3453883 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.71623010970551 31.0 31.0 34.0 30.0 34.0 2 31.89060457461935 31.0 31.0 34.0 30.0 34.0 3 31.965780832761272 31.0 31.0 34.0 30.0 34.0 4 35.646360921895734 37.0 35.0 37.0 33.0 37.0 5 35.56383612299548 37.0 35.0 37.0 33.0 37.0 6 35.60375612028549 37.0 35.0 37.0 33.0 37.0 7 35.473108672181425 37.0 35.0 37.0 33.0 37.0 8 35.499800369612984 37.0 35.0 37.0 33.0 37.0 9 37.104172318518025 39.0 37.0 39.0 33.0 39.0 10 36.98514512506648 39.0 37.0 39.0 33.0 39.0 11 37.022696194399174 39.0 37.0 39.0 33.0 39.0 12 36.934036271639776 39.0 37.0 39.0 33.0 39.0 13 36.97971182000085 39.0 37.0 39.0 33.0 39.0 14 38.01475006536122 40.0 37.0 41.0 33.0 41.0 15 37.97836956260534 40.0 37.0 41.0 33.0 41.0 16 37.87103066316954 40.0 37.0 41.0 32.0 41.0 17 37.916947968417 40.0 37.0 41.0 33.0 41.0 18 37.900516896490124 40.0 37.0 41.0 33.0 41.0 19 37.923555314409896 40.0 37.0 41.0 32.0 41.0 20 37.80810814958121 40.0 37.0 41.0 32.0 41.0 21 37.71200240425052 40.0 37.0 41.0 32.0 41.0 22 37.56840170903299 39.0 36.0 41.0 32.0 41.0 23 37.43514733996491 39.0 36.0 41.0 32.0 41.0 24 37.297392818459684 39.0 36.0 41.0 31.0 41.0 25 37.11039111631749 39.0 36.0 41.0 31.0 41.0 26 37.24597098396211 39.0 36.0 41.0 31.0 41.0 27 37.175639418011556 39.0 36.0 41.0 31.0 41.0 28 37.04930074353995 39.0 36.0 41.0 31.0 41.0 29 36.906973397767096 39.0 35.0 41.0 31.0 41.0 30 36.7732439112732 39.0 35.0 41.0 30.0 41.0 31 36.569862383873456 39.0 35.0 40.0 30.0 41.0 32 36.44321593985668 39.0 35.0 40.0 30.0 41.0 33 36.234448300651756 38.0 35.0 40.0 30.0 41.0 34 36.08597453938075 38.0 35.0 40.0 30.0 41.0 35 35.892629252351625 38.0 35.0 40.0 29.0 41.0 36 35.7412564351485 38.0 35.0 40.0 27.0 41.0 37 35.56112236575472 38.0 35.0 40.0 27.0 41.0 38 35.461592937572 38.0 35.0 40.0 26.0 41.0 39 35.31151981697122 38.0 34.0 40.0 25.0 41.0 40 35.11981992441551 38.0 34.0 40.0 24.0 41.0 41 34.974406776373144 38.0 34.0 40.0 24.0 41.0 42 34.734630269757254 38.0 34.0 40.0 23.0 41.0 43 34.37695428594426 38.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 4.0 13 7.0 14 6.0 15 14.0 16 52.0 17 100.0 18 252.0 19 533.0 20 1080.0 21 2300.0 22 4355.0 23 7490.0 24 12146.0 25 19179.0 26 27913.0 27 39414.0 28 54342.0 29 70930.0 30 89026.0 31 109966.0 32 134203.0 33 167107.0 34 206267.0 35 256055.0 36 334122.0 37 483431.0 38 657845.0 39 775742.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.777356094575296 21.15384336991149 13.989616903641497 23.07918363187172 2 18.787752798806444 22.968120228739654 35.50731162578466 22.736815346669243 3 20.090170975681573 24.691948163849208 32.3933671175312 22.82451374293802 4 14.007596667287226 16.10274580812378 35.92275708239104 33.966900442197954 5 13.048038975263493 38.0358570339528 34.824775477339564 14.091328513444143 6 32.566708252711514 36.37841814560597 13.752087143658311 17.3027864580242 7 26.070773097988553 32.730668641641884 21.692801985475477 19.505756274894082 8 26.688280986935574 34.569352812472225 19.196423272010083 19.54594292858212 9 24.238255899229937 14.694504706731525 22.32710256832672 38.740136825711815 10 16.784210698509476 26.932759447844646 33.59230755645168 22.690722297194203 11 32.6221820484365 22.203965797335925 23.910190356766574 21.263661797461005 12 20.909799202810287 26.81037545278749 31.255922681804797 21.02390266259743 13 31.437457493493554 20.539954596030032 26.807074819847692 21.215513090628722 14 20.456801808283604 22.927615092925848 27.940986999270095 28.674596099520457 15 22.910851351942146 28.918090161131687 25.886140323803673 22.28491816312249 16 21.705628129267843 28.02993037112143 27.140380840925992 23.124060658684733 17 21.590858752308634 26.337284731416784 27.42388783870212 24.64796867757246 18 22.97176829672574 25.0278309948542 29.844786288360087 22.155614420059973 19 22.756850767672212 24.485716510953033 30.89435861029456 21.8630741110802 20 23.798692659826635 23.986452349428166 30.818096617632968 21.396758373112235 21 22.60499269952109 24.996503934846665 31.290463515990552 21.108039849641695 22 21.311955268895908 25.32034235091345 30.835497322868203 22.53220505732244 23 22.128109145561677 25.543772038601194 31.82273400691338 20.505384808923754 24 22.286973820479734 25.594265931995956 29.40936331659179 22.709396930932517 25 22.257673464908915 25.806201310235465 30.24089119405608 21.695234030799536 26 22.101443505758592 26.327730267643695 30.33574096169442 21.2350852649033 27 20.992112355861504 26.469078425644412 30.13127543695024 22.407533781543844 28 21.39276287007985 26.077316458027095 30.249606023133964 22.28031464875909 29 21.64575348962313 26.03993823762994 29.710734266331546 22.60357400641539 30 21.649140981324496 26.240929411911175 31.232036522372063 20.877893084392262 31 22.294733203180307 25.696324976844902 31.103861943210003 20.90507987676479 32 21.90094453112627 25.617225597971903 30.00692264329741 22.474907227604408 33 21.481764147772232 25.793317260602056 30.60619019231399 22.11872839931173 34 20.9393311817453 26.305146989634565 30.99853121834179 21.756990610278347 35 20.56343541457542 28.21007544262501 29.950696071638788 21.275793071160777 36 22.514833305007727 25.925921636604365 29.941112654945172 21.618132403442733 37 21.59728630066508 26.456078564328898 29.91499712063205 22.031638014373968 38 21.509008845985807 25.14850676760041 31.09514711413212 22.247337272281662 39 20.905572076413705 24.934168296957367 31.874299158367553 22.285960468261372 40 19.94039751780822 25.880899845188733 31.30230526048508 22.876397376517964 41 21.32799518686649 24.82177305948117 31.28878424660013 22.561447507052208 42 19.949228158568197 26.783738765904925 30.699823937290287 22.56720913823659 43 20.248167062983892 26.740019855912895 29.881411732823608 23.1304013482796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 180.0 1 426.5 2 673.0 3 1996.0 4 3319.0 5 3319.0 6 5044.5 7 6770.0 8 7398.0 9 8026.0 10 11836.0 11 15646.0 12 15646.0 13 28858.0 14 42070.0 15 63685.5 16 85301.0 17 78989.0 18 72677.0 19 72677.0 20 78994.5 21 85312.0 22 67359.5 23 49407.0 24 54512.0 25 59617.0 26 59617.0 27 63955.0 28 68293.0 29 74075.0 30 79857.0 31 88057.0 32 96257.0 33 96257.0 34 106905.5 35 117554.0 36 129375.5 37 141197.0 38 149920.5 39 158644.0 40 158644.0 41 165749.5 42 172855.0 43 185993.5 44 199132.0 45 216755.5 46 234379.0 47 234379.0 48 304087.0 49 373795.0 50 352780.0 51 331765.0 52 306181.5 53 280598.0 54 280598.0 55 248579.0 56 216560.0 57 183783.0 58 151006.0 59 133174.0 60 115342.0 61 115342.0 62 101894.5 63 88447.0 64 76381.0 65 64315.0 66 55023.5 67 45732.0 68 45732.0 69 39082.5 70 32433.0 71 27549.0 72 22665.0 73 18628.5 74 14592.0 75 14592.0 76 11595.5 77 8599.0 78 6700.0 79 4801.0 80 3799.0 81 2797.0 82 2797.0 83 2117.0 84 1437.0 85 1110.0 86 783.0 87 656.0 88 529.0 89 529.0 90 437.0 91 345.0 92 223.0 93 101.0 94 76.0 95 51.0 96 51.0 97 32.5 98 14.0 99 12.0 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3453883.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.10562207277114 #Duplication Level Percentage of deduplicated Percentage of total 1 76.99607569842772 33.959598158413314 2 12.40874570857765 10.945908972392932 3 4.275895050063473 5.6577303330279705 4 1.9010366444624565 3.3538561514860037 5 1.0464687926707206 2.307757854024195 6 0.6213858876051387 1.6443966672039414 7 0.446151302306791 1.3774446508772593 8 0.3160853367761261 1.1152912325273925 9 0.22872349712835355 0.9079192911155144 >10 1.4822468780268532 12.563625624026239 >50 0.15478968151714662 4.764559281979154 >100 0.10916676605968731 9.276573473145564 >500 0.007634506168581952 2.3128919109331263 >1k 0.004870288417454005 4.4369857971583535 >5k 3.9488825006383827E-4 1.3845478735447492 >10k+ 3.290735417198652E-4 3.9909127281443237 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 40935 1.1851878016713364 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 39694 1.1492572273004036 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 29984 0.8681243690072883 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 16431 0.47572543713843235 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 10441 0.3022974431965414 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 9504 0.2751685566650636 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 9386 0.27175211204316996 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 8258 0.23909321769150838 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 8072 0.23370797447394717 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6827 0.19766158842091638 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 5650 0.1635840009635532 No Hit GTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAGCG 4942 0.14308533323219114 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4869 0.14097177003390096 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4579 0.1325754230817894 No Hit GCATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCC 4415 0.12782714411576768 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4224 0.12229713629558384 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4210 0.12189179540824052 No Hit CGCTCGAACATTCCTAAGTCTGAATCGTGTAGCAAGCCCGTAC 4112 0.1190544091968373 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 4082 0.11818582158110162 No Hit CGGCAGCAACGCTCGAACATTCCTAAGTCTGAATCGTGTAGCA 3969 0.11491414156183057 No Hit CTTGCTACACGATTCAGACTTAGGAATGTTCGAGCGTTGCTGC 3943 0.11416136562819297 No Hit GTATTGGACCCTCGCATGTGCGTTGCTGCATTTTACTCTTCTC 3678 0.10648884168919445 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.895292052452269E-5 0.0 3 2.895292052452269E-5 0.0 0.0 2.895292052452269E-5 0.0 4 2.895292052452269E-5 0.0 0.0 5.790584104904538E-5 0.0 5 2.895292052452269E-5 0.0 0.0 8.685876157356807E-5 0.0 6 2.895292052452269E-5 0.0 0.0 8.685876157356807E-5 0.0 7 2.895292052452269E-5 0.0 0.0 1.4476460262261346E-4 0.0 8 2.895292052452269E-5 0.0 0.0 1.7371752314713614E-4 0.0 9 2.895292052452269E-5 0.0 0.0 2.895292052452269E-4 0.0 10 8.685876157356807E-5 0.0 0.0 4.921996489168857E-4 0.0 11 2.3162336419618151E-4 0.0 0.0 8.685876157356806E-4 0.0 12 2.3162336419618151E-4 0.0 0.0 0.0018240339930449294 0.0 13 2.3162336419618151E-4 0.0 0.0 0.002026704436716588 0.0 14 2.3162336419618151E-4 0.0 0.0 0.0023162336419618153 0.0 15 2.3162336419618151E-4 0.0 0.0 0.0032137741782220187 0.0 16 2.3162336419618151E-4 0.0 0.0 0.0039665501118596085 0.0 17 2.3162336419618151E-4 0.0 0.0 0.005298384455987652 0.0 18 2.3162336419618151E-4 0.0 0.0 0.006195924992247855 0.0 19 2.895292052452269E-4 0.0 0.0 0.007933100223719217 0.0 20 3.1848212576974957E-4 0.0 0.0 0.012536614587118324 0.0 21 3.1848212576974957E-4 0.0 0.0 0.020614479413460157 0.0 22 3.7638796681879494E-4 0.0 0.0 0.033730152411068935 0.0 23 3.7638796681879494E-4 0.0 0.0 0.04316880450206333 0.0 24 3.7638796681879494E-4 0.0 0.0 0.057558406002751104 0.0 25 3.7638796681879494E-4 0.0 0.0 0.06714182269636812 0.0 26 4.0534088734331766E-4 0.0 0.0 0.08121294207128614 0.0 27 4.0534088734331766E-4 0.0 0.0 0.1369183611604678 0.0 28 4.342938078678403E-4 0.0 0.0 0.2626029891574208 0.0 29 4.342938078678403E-4 0.0 0.0 0.42859008252450936 0.0 30 4.342938078678403E-4 0.0 0.0 0.6575787309529593 0.0 31 4.6324672839236303E-4 0.0 0.0 0.9872945898862238 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 12860 0.0 22.225895 1 ACGTTTA 295 0.0 18.813559 26 ACCGTTA 485 0.0 16.783504 8 TCACGTT 320 0.0 16.1875 24 GTATTGG 1855 0.0 15.857142 1 CGTGATT 70 0.0025939052 15.857142 12 GTATTAG 645 0.0 15.775193 1 CACGTTT 345 0.0 15.550724 25 TTAACGG 405 0.0 15.530864 35 TAATACT 770 0.0 15.376623 4 ATTAGAG 615 0.0 15.341463 3 ATTGGAC 1965 0.0 15.157762 3 GTCGTAC 75 0.004106621 14.8 1 GTATCAA 19375 0.0 14.723613 2 CTAATAC 705 0.0 14.695036 3 TTGGACC 2685 0.0 14.675978 4 CGTTATT 265 0.0 14.6603775 10 CCGTTTA 515 0.0 14.368932 27 TATACTG 440 0.0 13.875 5 CGTTTAC 560 0.0 13.875 28 >>END_MODULE