##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2088588_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3712071 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.703895749838836 31.0 31.0 34.0 30.0 34.0 2 31.887560070914592 31.0 31.0 34.0 30.0 34.0 3 31.958892488855952 31.0 31.0 34.0 30.0 34.0 4 35.65191183035023 37.0 35.0 37.0 33.0 37.0 5 35.553692534436976 37.0 35.0 37.0 33.0 37.0 6 35.588444833086434 37.0 35.0 37.0 33.0 37.0 7 35.462376931906746 37.0 35.0 37.0 33.0 37.0 8 35.4793275775167 37.0 35.0 37.0 33.0 37.0 9 37.09178569052155 39.0 37.0 39.0 33.0 39.0 10 36.95215096909515 39.0 37.0 39.0 33.0 39.0 11 36.99410302227517 39.0 37.0 39.0 33.0 39.0 12 36.89650871440767 39.0 37.0 39.0 33.0 39.0 13 36.94155715232817 39.0 37.0 39.0 33.0 39.0 14 37.98739625400484 40.0 37.0 41.0 33.0 41.0 15 37.94570443291629 40.0 37.0 41.0 33.0 41.0 16 37.84183680753951 40.0 37.0 41.0 32.0 41.0 17 37.87056740024639 40.0 37.0 41.0 33.0 41.0 18 37.84375244977804 40.0 37.0 41.0 32.0 41.0 19 37.86780075057832 40.0 37.0 41.0 32.0 41.0 20 37.744836507706886 40.0 37.0 41.0 32.0 41.0 21 37.65005760935068 40.0 37.0 41.0 32.0 41.0 22 37.50410242692018 39.0 36.0 41.0 32.0 41.0 23 37.386606560057714 39.0 36.0 41.0 31.0 41.0 24 37.25113231939799 39.0 36.0 41.0 31.0 41.0 25 37.05342974312722 39.0 36.0 41.0 31.0 41.0 26 37.21123680015819 39.0 36.0 41.0 31.0 41.0 27 37.14250885826268 39.0 36.0 41.0 31.0 41.0 28 37.02587692961692 39.0 36.0 41.0 31.0 41.0 29 36.885156830243815 39.0 36.0 41.0 30.0 41.0 30 36.785846768555885 39.0 35.0 41.0 30.0 41.0 31 36.6117735894599 39.0 35.0 40.0 30.0 41.0 32 36.503939714515155 39.0 35.0 40.0 30.0 41.0 33 36.31466450938034 38.0 35.0 40.0 30.0 41.0 34 36.18539947107693 38.0 35.0 40.0 30.0 41.0 35 36.01950528424699 38.0 35.0 40.0 29.0 41.0 36 35.88960448224185 38.0 35.0 40.0 28.0 41.0 37 35.73594174249361 38.0 35.0 40.0 27.0 41.0 38 35.66015520716064 38.0 35.0 40.0 27.0 41.0 39 35.537910778107424 38.0 35.0 40.0 26.0 41.0 40 35.37022540786531 38.0 34.0 40.0 25.0 41.0 41 35.257594210886595 38.0 34.0 40.0 25.0 41.0 42 35.05427967299117 38.0 34.0 40.0 24.0 41.0 43 34.7027080031605 38.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 3.0 12 5.0 13 2.0 14 12.0 15 19.0 16 47.0 17 122.0 18 273.0 19 542.0 20 1264.0 21 2444.0 22 4574.0 23 7937.0 24 13010.0 25 19933.0 26 29135.0 27 41332.0 28 56444.0 29 73593.0 30 94527.0 31 116726.0 32 143988.0 33 178005.0 34 222368.0 35 275764.0 36 359628.0 37 508460.0 38 715237.0 39 846676.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.463484938730964 21.097710684951878 13.709678505610478 23.729125870706675 2 19.199902157043873 22.58467039019458 35.029637094764624 23.185790357996925 3 19.734374692725435 24.284772570352235 32.16091502560161 23.819937711320716 4 14.027748930448796 16.177626990432024 35.907233455394575 33.8873906237246 5 13.187678791704146 37.841005735073495 34.94275836857646 14.028557104645897 6 32.879785973921294 36.785476355382215 13.718676178338185 16.61606149235831 7 26.451541471054835 32.409751860888434 21.589376927327088 19.549329740729636 8 26.642513033829363 34.731339998615326 19.003057861770426 19.62308910578488 9 24.660573572003337 14.363114283105038 21.4712487988511 39.50506334604052 10 16.826536992422827 26.94816451517226 33.37767515761417 22.84762333479074 11 33.72993135098979 22.154587021638324 23.114401637253167 21.001079990118722 12 21.03585841973389 26.805575647664064 30.575735216271454 21.582830716330587 13 31.19048638886487 20.724576658151207 26.019572362705347 22.06536459027858 14 20.779667199253463 22.44892406422183 27.31324373914184 29.458164997382863 15 23.40550598304828 28.896052904160506 25.08238662460928 22.616054488181934 16 22.471930089699256 27.852673076565615 26.273365999734384 23.40203083400075 17 22.121559636116874 26.555068585703236 26.771228244287354 24.552143533892536 18 23.078841972580804 25.3759963104154 28.980076081518913 22.565085635484884 19 23.341687160617347 24.616285626002306 29.81120242581567 22.230824787564675 20 23.99981034845508 24.34993834977833 29.772868029733267 21.87738327203332 21 23.131912078190314 25.161830148184126 29.912493591852098 21.79376418177346 22 21.941067398764734 25.569742604599966 29.553583430920366 22.935606565714934 23 22.633187781160437 25.713301281144673 30.55585413102282 21.09765680667207 24 22.855947529020863 25.71006858435628 28.315271986985163 23.118711899637695 25 22.804062745567098 25.70621628735011 29.277376429491785 22.21234453759101 26 22.420341636784425 26.472634817599122 29.24682744484144 21.860196100775013 27 21.656886411924773 26.45806074291144 28.896591686958573 22.98846115820522 28 21.927139863434725 26.114802222263528 29.23160683079607 22.726451083505676 29 22.323818698510888 26.090961083449105 28.7174733457415 22.867746872298508 30 22.26312481630874 26.137431099782304 30.004194424082947 21.59524965982601 31 22.62467501295099 25.840831169446922 29.907752303229113 21.626741514372974 32 22.199844776675878 25.715752742875875 29.12786420302844 22.956538277419803 33 21.985974944983543 25.757670044565415 29.671684620256457 22.58467039019458 34 21.458021681158577 25.978005269834547 30.224017805693908 22.339955243312964 35 21.216081265687 27.618194802847253 29.184463335965287 21.981260595500462 36 22.956888486238544 25.624105788924833 29.12153350515117 22.297472219685453 37 21.98710638885948 26.055401418776743 29.20633791756677 22.751154274797006 38 21.91978547824112 24.966063418506813 30.408928061990192 22.70522304126187 39 21.3424258318335 24.91094593826465 31.003555697075836 22.743072532826012 40 20.601114579974357 25.54875701461529 30.636833185572147 23.213295219838198 41 21.55823528159887 24.58684114608799 30.770936224010804 23.083987348302333 42 20.493600472620273 26.32966880213229 30.2206773523459 22.956053372901543 43 20.873415406116962 26.021592798198096 29.602343274145348 23.502648521539594 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 231.0 1 445.0 2 659.0 3 1653.0 4 2647.0 5 2647.0 6 4127.0 7 5607.0 8 6168.0 9 6729.0 10 10123.5 11 13518.0 12 13518.0 13 24925.0 14 36332.0 15 56054.0 16 75776.0 17 69970.0 18 64164.0 19 64164.0 20 70217.0 21 76270.0 22 61089.5 23 45909.0 24 51511.0 25 57113.0 26 57113.0 27 63195.0 28 69277.0 29 76475.0 30 83673.0 31 93169.0 32 102665.0 33 102665.0 34 116801.5 35 130938.0 36 145708.0 37 160478.0 38 173704.0 39 186930.0 40 186930.0 41 195083.5 42 203237.0 43 218919.0 44 234601.0 45 245046.5 46 255492.0 47 255492.0 48 314189.0 49 372886.0 50 354293.5 51 335701.0 52 311815.0 53 287929.0 54 287929.0 55 260115.0 56 232301.0 57 203127.0 58 173953.0 59 156922.0 60 139891.0 61 139891.0 62 124221.0 63 108551.0 64 94424.5 65 80298.0 66 68615.0 67 56932.0 68 56932.0 69 48674.5 70 40417.0 71 34253.5 72 28090.0 73 23169.5 74 18249.0 75 18249.0 76 14642.5 77 11036.0 78 8636.0 79 6236.0 80 4880.5 81 3525.0 82 3525.0 83 2634.5 84 1744.0 85 1356.5 86 969.0 87 760.5 88 552.0 89 552.0 90 444.0 91 336.0 92 235.5 93 135.0 94 103.0 95 71.0 96 71.0 97 42.0 98 13.0 99 11.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 3712071.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.10096707116939 #Duplication Level Percentage of deduplicated Percentage of total 1 77.34289877106325 34.882395306625114 2 12.241222216756906 11.04181920217641 3 4.138703185736345 5.599785482917162 4 1.8842744294464384 3.3993039598204127 5 1.0489725200300517 2.365483754221847 6 0.6167330721599001 1.6689154787510878 7 0.4368703058900909 1.3792291296224481 8 0.30000065641031365 1.0824255780872605 9 0.22945179367720495 0.9313648011950736 >10 1.4929798609566491 12.834829411167131 >50 0.1520877126061036 4.74953370273849 >100 0.10172840586307856 8.989389425770652 >500 0.008446241643960122 2.6784229551433514 >1k 0.0050318035298006275 4.12675436563171 >5k 3.5941453784290195E-4 1.2216353554205568 >10k+ 2.3960969189526797E-4 3.0487120907114016 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36835 0.9923032183382268 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 35609 0.9592758328167753 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 26463 0.7128904592611509 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13939 0.3755046711121635 No Hit GAGTACGGGCTTGCTACACGATTCAGACTTAGGAATGTTCGAG 8189 0.22060461666816178 No Hit TATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAGG 7852 0.21152612652074812 No Hit ATTCAGACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAA 7796 0.21001753468616308 No Hit ATTTTACTCTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTA 7642 0.20586890714105413 No Hit GGTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTA 7495 0.20190885357526836 No Hit GTATCAACGCAGAGTACGGGCTTGCTACACGATTCAGACTTAG 6244 0.16820798955623423 No Hit GACTTAGGAATGTTCGAGCGTTGCTGCCGAGGGGAGAAGAGTA 4241 0.11424889232991503 No Hit CTTCTCCCCTCGGCAGCAACGCTCGAACATTCCTAAGTCTGAA 4105 0.1105851693030656 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4083 0.10999250822519288 No Hit TTCCTAAGTCTGAATCGTGTAGCAAGCCCGTACTCTGCGTTGA 3938 0.10608633293921373 No Hit AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3916 0.10549367186134101 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 2.693913990330465E-5 0.0 0.0 0.0 0.0 3 2.693913990330465E-5 0.0 0.0 0.0 0.0 4 2.693913990330465E-5 0.0 0.0 0.0 0.0 5 2.693913990330465E-5 0.0 0.0 2.693913990330465E-5 0.0 6 2.693913990330465E-5 0.0 0.0 2.693913990330465E-5 0.0 7 5.38782798066093E-5 0.0 0.0 2.693913990330465E-5 0.0 8 5.38782798066093E-5 0.0 0.0 2.693913990330465E-5 0.0 9 5.38782798066093E-5 0.0 0.0 2.155131192264372E-4 0.0 10 5.38782798066093E-5 0.0 0.0 3.771479586462651E-4 0.0 11 1.8857397932313256E-4 0.0 0.0 5.38782798066093E-4 0.0 12 1.8857397932313256E-4 0.0 0.0 8.620524769057488E-4 0.0 13 1.8857397932313256E-4 0.0 0.0 9.428698966156628E-4 0.0 14 2.4245225912974185E-4 0.0 0.0 0.0011583830158421 0.0 15 2.4245225912974185E-4 0.0 0.0 0.001535530974488365 0.0 16 2.4245225912974185E-4 0.0 0.0 0.0019126789331346302 0.0 17 2.4245225912974185E-4 0.0 0.0 0.002478400871104028 0.0 18 2.693913990330465E-4 0.0 0.0 0.002909427109556902 0.0 19 2.9633053893635114E-4 0.0 0.0 0.0039600535657857835 0.0 20 2.9633053893635114E-4 0.0 0.0 0.006653967556116249 0.0 21 3.232696788396558E-4 0.0 0.0 0.01117974305987143 0.0 22 3.502088187429605E-4 0.0 0.0 0.018507189113570296 0.0 23 3.502088187429605E-4 0.0 0.0 0.022844390638002345 0.0 24 3.502088187429605E-4 0.0 0.0 0.031006950028703652 0.0 25 3.502088187429605E-4 0.0 0.0 0.03639477800936458 0.0 26 3.502088187429605E-4 0.0 0.0 0.04630838149378069 0.0 27 3.502088187429605E-4 0.0 0.0 0.10115647033690897 0.0 28 3.771479586462651E-4 0.0 0.0 0.22389119173636496 0.0 29 3.771479586462651E-4 0.0 0.0 0.3769324455270387 0.0 30 3.771479586462651E-4 0.0 0.0 0.5971599142365542 0.0 31 3.771479586462651E-4 0.0 0.0 0.9137486863801905 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 10975 0.0 24.087927 1 GTATTGG 1670 0.0 18.278442 1 GTATCAA 16740 0.0 15.7813635 2 GTACCGA 85 5.368153E-4 15.235294 6 TTGGACC 2405 0.0 15.076924 4 TGGACCC 2385 0.0 14.97065 5 ATTGGAC 1980 0.0 14.949495 3 GGACCCT 2410 0.0 14.5083 6 GTATACG 280 0.0 13.875001 1 TTCGTTA 375 0.0 13.813334 30 CTAATAC 985 0.0 13.71066 3 ATACTGG 945 0.0 13.703704 6 TAATACT 995 0.0 13.572865 4 TATACCG 205 1.4260877E-9 13.536586 5 TATACTG 515 0.0 13.291263 5 CGAACTA 725 0.0 13.013793 24 CGAACGT 370 0.0 13.0 12 TACCCCG 400 0.0 12.950001 5 TACTCCG 1005 0.0 12.8855715 5 ACCGTTA 575 0.0 12.869564 8 >>END_MODULE